View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF15954_low_7 (Length: 556)

Name: NF15954_low_7
Description: NF15954
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF15954_low_7
NF15954_low_7
[»] chr7 (18 HSPs)
chr7 (234-540)||(20145813-20146119)
chr7 (234-522)||(14986989-14987278)
chr7 (234-522)||(15416600-15416889)
chr7 (234-538)||(2546914-2547215)
chr7 (318-534)||(17600539-17600754)
chr7 (238-500)||(24832402-24832670)
chr7 (318-540)||(3743380-3743608)
chr7 (331-493)||(4173452-4173615)
chr7 (73-166)||(2545771-2545864)
chr7 (85-226)||(20146231-20146371)
chr7 (88-230)||(14986744-14986882)
chr7 (88-230)||(15416355-15416493)
chr7 (86-205)||(4173104-4173222)
chr7 (338-442)||(10649240-10649344)
chr7 (357-489)||(18046371-18046501)
chr7 (84-120)||(2563197-2563233)
chr7 (387-442)||(9022558-9022614)
chr7 (109-165)||(10648940-10648996)
[»] chr8 (28 HSPs)
chr8 (234-540)||(28371034-28371341)
chr8 (319-535)||(9218079-9218298)
chr8 (85-203)||(23539981-23540099)
chr8 (318-449)||(23540219-23540351)
chr8 (411-537)||(10660970-10661095)
chr8 (318-490)||(9286326-9286498)
chr8 (21-230)||(28371450-28371658)
chr8 (318-452)||(16600591-16600725)
chr8 (256-418)||(10661748-10661911)
chr8 (337-479)||(13110204-13110345)
chr8 (88-166)||(10662109-10662187)
chr8 (402-449)||(26136195-26136242)
chr8 (339-479)||(18672125-18672261)
chr8 (384-490)||(22713661-22713767)
chr8 (318-382)||(24577344-24577408)
chr8 (340-475)||(25095052-25095187)
chr8 (318-490)||(27123582-27123752)
chr8 (19-166)||(16600980-16601128)
chr8 (387-438)||(15340931-15340983)
chr8 (387-438)||(15429996-15430048)
chr8 (387-438)||(15521300-15521352)
chr8 (387-438)||(41652021-41652073)
chr8 (429-475)||(9006930-9006976)
chr8 (19-92)||(24680572-24680644)
chr8 (387-438)||(23355487-23355539)
chr8 (54-130)||(24092825-24092900)
chr8 (387-438)||(32352217-32352269)
chr8 (387-438)||(32368878-32368930)
[»] chr2 (18 HSPs)
chr2 (234-542)||(18929235-18929543)
chr2 (248-540)||(26650839-26651133)
chr2 (331-534)||(17402729-17402932)
chr2 (21-230)||(18929651-18929859)
chr2 (306-521)||(25520385-25520601)
chr2 (331-490)||(31404046-31404205)
chr2 (86-205)||(26651281-26651400)
chr2 (234-369)||(19878981-19879117)
chr2 (60-169)||(17403198-17403307)
chr2 (234-490)||(24543870-24544126)
chr2 (19-141)||(25519997-25520118)
chr2 (331-457)||(20478255-20478379)
chr2 (329-442)||(29891263-29891376)
chr2 (387-438)||(28760672-28760724)
chr2 (389-475)||(17162015-17162101)
chr2 (389-490)||(17636690-17636791)
chr2 (387-434)||(15438056-15438104)
chr2 (109-165)||(29890937-29890993)
[»] chr5 (29 HSPs)
chr5 (247-514)||(19217911-19218177)
chr5 (242-500)||(20064388-20064653)
chr5 (234-500)||(20060802-20061075)
chr5 (234-449)||(20713228-20713443)
chr5 (233-449)||(23210024-23210240)
chr5 (234-500)||(20058550-20058824)
chr5 (57-223)||(20064102-20064265)
chr5 (236-449)||(25951315-25951528)
chr5 (85-205)||(25951664-25951783)
chr5 (86-205)||(20058300-20058418)
chr5 (85-183)||(21165557-21165655)
chr5 (83-205)||(23209772-23209893)
chr5 (318-418)||(23379373-23379474)
chr5 (331-490)||(17167275-17167433)
chr5 (384-490)||(19924022-19924128)
chr5 (342-538)||(23355581-23355777)
chr5 (357-490)||(24878356-24878489)
chr5 (86-205)||(20061207-20061323)
chr5 (384-490)||(19926749-19926855)
chr5 (336-469)||(17987487-17987619)
chr5 (86-130)||(19217727-19217771)
chr5 (132-205)||(20713575-20713647)
chr5 (59-167)||(24878782-24878889)
chr5 (55-130)||(17987914-17987988)
chr5 (55-165)||(22011479-22011588)
chr5 (248-365)||(21165282-21165399)
chr5 (507-538)||(24878288-24878319)
chr5 (389-438)||(31533052-31533102)
chr5 (462-494)||(25951260-25951292)
[»] chr3 (26 HSPs)
chr3 (234-540)||(15686859-15687166)
chr3 (306-533)||(24699049-24699275)
chr3 (318-534)||(26010836-26011055)
chr3 (338-521)||(13428733-13428914)
chr3 (233-538)||(4765605-4765916)
chr3 (318-513)||(4769742-4769937)
chr3 (234-449)||(7148790-7149005)
chr3 (22-166)||(9033080-9033225)
chr3 (318-540)||(4832516-4832740)
chr3 (234-457)||(9033398-9033622)
chr3 (234-446)||(29614512-29614724)
chr3 (56-207)||(4765324-4765475)
chr3 (342-484)||(23378488-23378631)
chr3 (318-449)||(16242937-16243069)
chr3 (87-205)||(24698727-24698845)
chr3 (23-202)||(4770096-4770274)
chr3 (86-166)||(15687340-15687420)
chr3 (88-181)||(16242605-16242699)
chr3 (86-204)||(29614037-29614155)
chr3 (357-480)||(27304424-27304547)
chr3 (99-207)||(4832190-4832300)
chr3 (406-480)||(8737234-8737308)
chr3 (406-480)||(9089472-9089546)
chr3 (429-475)||(13409833-13409879)
chr3 (86-169)||(13428406-13428488)
chr3 (387-438)||(48896075-48896127)
[»] chr6 (22 HSPs)
chr6 (312-540)||(22397548-22397777)
chr6 (234-449)||(16177304-16177519)
chr6 (233-445)||(15830026-15830238)
chr6 (331-531)||(17524797-17524998)
chr6 (33-202)||(17525233-17525401)
chr6 (318-449)||(1177214-1177349)
chr6 (21-147)||(31125747-31125872)
chr6 (357-490)||(18713709-18713842)
chr6 (357-490)||(17947890-17948023)
chr6 (385-490)||(14762985-14763090)
chr6 (234-500)||(31126065-31126351)
chr6 (56-166)||(22394072-22394179)
chr6 (86-170)||(16177672-16177759)
chr6 (127-204)||(1176918-1176994)
chr6 (387-488)||(28712360-28712461)
chr6 (387-438)||(13002854-13002906)
chr6 (97-183)||(32784447-32784534)
chr6 (405-475)||(25945846-25945916)
chr6 (389-438)||(24154179-24154229)
chr6 (387-431)||(10163272-10163317)
chr6 (387-438)||(16143188-16143240)
chr6 (387-490)||(16793265-16793368)
[»] chr4 (11 HSPs)
chr4 (306-540)||(11361595-11361830)
chr4 (332-533)||(9409168-9409370)
chr4 (85-228)||(11362017-11362160)
chr4 (318-490)||(16675086-16675259)
chr4 (387-449)||(5358040-5358102)
chr4 (318-490)||(4697454-4697626)
chr4 (428-475)||(18558469-18558516)
chr4 (387-437)||(26654144-26654195)
chr4 (52-130)||(10071001-10071078)
chr4 (387-438)||(12424798-12424850)
chr4 (387-438)||(24924906-24924958)
[»] chr1 (20 HSPs)
chr1 (234-495)||(20146169-20146437)
chr1 (234-514)||(11013745-11014027)
chr1 (234-484)||(33103021-33103273)
chr1 (89-226)||(20146549-20146686)
chr1 (86-207)||(11013493-11013614)
chr1 (318-490)||(36571655-36571826)
chr1 (319-446)||(20150435-20150563)
chr1 (320-470)||(22607834-22607984)
chr1 (234-446)||(13201980-13202192)
chr1 (318-476)||(17615272-17615430)
chr1 (50-167)||(22619654-22619770)
chr1 (357-447)||(22620063-22620153)
chr1 (418-490)||(20866221-20866293)
chr1 (331-475)||(22533687-22533830)
chr1 (306-369)||(13232737-13232801)
chr1 (429-468)||(20886571-20886610)
chr1 (388-438)||(23455191-23455242)
chr1 (85-167)||(17615684-17615766)
chr1 (86-142)||(13232414-13232470)
chr1 (336-460)||(18780587-18780712)
[»] scaffold0555 (2 HSPs)
scaffold0555 (234-495)||(5582-5851)
scaffold0555 (93-226)||(5337-5470)
[»] scaffold0264 (2 HSPs)
scaffold0264 (234-540)||(20793-21097)
scaffold0264 (96-207)||(21225-21337)
[»] scaffold0002 (2 HSPs)
scaffold0002 (234-490)||(374041-374294)
scaffold0002 (56-142)||(373762-373847)
[»] scaffold0337 (2 HSPs)
scaffold0337 (318-490)||(17221-17392)
scaffold0337 (375-490)||(4546-4661)
[»] scaffold0795 (2 HSPs)
scaffold0795 (86-230)||(5725-5869)
scaffold0795 (234-294)||(5971-6031)
[»] scaffold0016 (1 HSPs)
scaffold0016 (318-418)||(12991-13092)
[»] scaffold0161 (1 HSPs)
scaffold0161 (93-205)||(5276-5388)
[»] scaffold0142 (1 HSPs)
scaffold0142 (306-459)||(20572-20725)
[»] scaffold1102 (1 HSPs)
scaffold1102 (318-442)||(871-996)
[»] scaffold0040 (1 HSPs)
scaffold0040 (387-490)||(26930-27031)
[»] scaffold0431 (1 HSPs)
scaffold0431 (387-438)||(5125-5177)
[»] scaffold0024 (1 HSPs)
scaffold0024 (387-438)||(38915-38967)


Alignment Details
Target: chr7 (Bit Score: 176; Significance: 1e-94; HSPs: 18)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 176; E-Value: 1e-94
Query Start/End: Original strand, 234 - 540
Target Start/End: Complemental strand, 20146119 - 20145813
Alignment:
Q  234 tgggagacaagcgtttgtctacatggaagtagtgctgattgtgggattcgtttctttccaaattagtatctttgtattaataagagttttccataga-aa 332  Q
    ||||||||||||| |||||| |||||||| ||||||||| |||||||| |||||||||||| ||| |  || ||||| ||||  |||||| |||||  ||    
T  20146119 tgggagacaagcggttgtcttcatggaaggagtgctgatcgtgggattagtttctttccaagttatttcctatgtataaatagtagtttttcataggtaa 20146020  T
Q  333 aacgggtcgcaaatcacctatacaaaattctaaaacattcaaagtaccggagcgagagaaaagagtcataaagaatgtatgtaaaggatttgtcgaacca 432  Q
    |||||||||||||||||| || || |||||||||||| || |||||| || ||||||||| |||||||||||||||||||||||||||||||||||||||    
T  20146019 aacgggtcgcaaatcacccatgcataattctaaaacactcgaagtactggcgcgagagaagagagtcataaagaatgtatgtaaaggatttgtcgaacca 20145920  T
Q  433 cctttatttttaatgcattgtattttacctttcctttacgtttctgcaatttaaacttaatgccttaactttgcttttaaaaccttttttctgtcgaaag 532  Q
    |||||||||||||||||||||||| ||||||||||| | |||||||||||||||| ||||||| || |||||||||||||||||| ||||||||||||||    
T  20145919 cctttatttttaatgcattgtattctacctttccttgaagtttctgcaatttaaagttaatgcatttactttgcttttaaaacct-ttttctgtcgaaag 20145821  T
Q  533 acgccaca 540  Q
    ||||||||    
T  20145820 acgccaca 20145813  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 147; E-Value: 3e-77
Query Start/End: Original strand, 234 - 522
Target Start/End: Original strand, 14986989 - 14987278
Alignment:
Q  234 tgggagacaagcgtttgtctacatggaagtagtgctgattgtgggattcgtttctttccaaattagtatctttgtattaataagagttttccataga-aa 332  Q
    ||||||||||||| ||||||||||||||| |||| |||| ||| |||  |||||||||||  ||| | ||||||||| ||||||||||||||||||  ||    
T  14986989 tgggagacaagcggttgtctacatggaaggagtgatgatcgtgagataagtttctttccac-ttattttctttgtataaataagagttttccatagggaa 14987087  T
Q  333 aacgggtcgcaaatcacctatacaaaattctaaaacattcaaagtaccggagcgagagaaaagagtcataaagaatgtatgtaaaggatttgtcgaacca 432  Q
    || |||||||| |||||||||||| |||||||||||| || ||||||||| |||||||||||||||||||||||||||||||||| ||||| ||||||||    
T  14987088 aatgggtcgcatatcacctatacataattctaaaacactcgaagtaccggtgcgagagaaaagagtcataaagaatgtatgtaaaagatttttcgaacca 14987187  T
Q  433 cctttatttttaatgcattgta-ttttacctttcctttacgtttctgcaatttaaacttaatgccttaactttgcttttaaaacctttttt 522  Q
    |||||||||||||||   |||| ||||| |||| ||||| |||||| |||||||||||||||||||| ||||| |||||||| ||||||||    
T  14987188 cctttatttttaatgagatgtatttttatcttttctttaagtttctccaatttaaacttaatgcctttacttttcttttaaaccctttttt 14987278  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 147; E-Value: 3e-77
Query Start/End: Original strand, 234 - 522
Target Start/End: Original strand, 15416600 - 15416889
Alignment:
Q  234 tgggagacaagcgtttgtctacatggaagtagtgctgattgtgggattcgtttctttccaaattagtatctttgtattaataagagttttccataga-aa 332  Q
    ||||||||||||| ||||||||||||||| |||| |||| ||| |||  |||||||||||  ||| | ||||||||| ||||||||||||||||||  ||    
T  15416600 tgggagacaagcggttgtctacatggaaggagtgatgatcgtgagataagtttctttccac-ttattttctttgtataaataagagttttccatagggaa 15416698  T
Q  333 aacgggtcgcaaatcacctatacaaaattctaaaacattcaaagtaccggagcgagagaaaagagtcataaagaatgtatgtaaaggatttgtcgaacca 432  Q
    || |||||||| |||||||||||| |||||||||||| || ||||||||| |||||||||||||||||||||||||||||||||| ||||| ||||||||    
T  15416699 aatgggtcgcatatcacctatacataattctaaaacactcgaagtaccggtgcgagagaaaagagtcataaagaatgtatgtaaaagatttttcgaacca 15416798  T
Q  433 cctttatttttaatgcattgta-ttttacctttcctttacgtttctgcaatttaaacttaatgccttaactttgcttttaaaacctttttt 522  Q
    |||||||||||||||   |||| ||||| |||| ||||| |||||| |||||||||||||||||||| ||||| |||||||| ||||||||    
T  15416799 cctttatttttaatgagatgtatttttatcttttctttaagtttctccaatttaaacttaatgcctttacttttcttttaaaccctttttt 15416889  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 145; E-Value: 5e-76
Query Start/End: Original strand, 234 - 538
Target Start/End: Complemental strand, 2547215 - 2546914
Alignment:
Q  234 tgggagacaagcgtttgtctacatggaagtagtgctgattgtgggattcgtttctttccaaattagtatctttgtattaataagagttttccataga-aa 332  Q
    ||||||||||||| ||||||||||||||| |||| |||| |||||||| ||||||||| |  |   | ||| ||||| | ||| ||||||||||||  ||    
T  2547215 tgggagacaagcggttgtctacatggaaggagtgttgatcgtgggattagtttctttctagttatttttctatgtataagtaatagttttccatagggaa 2547116  T
Q  333 aacgggtcgcaaatcacctatacaaaattctaaaacattcaaagtaccggagcgagagaaaagagtcataaagaatgtatgtaaaggatttgtcgaacca 432  Q
    |||||||||||||||||||||| | |||||||||||| || ||||||||   |||||||||| |||||||||||||| |||||||||||||| |  ||||    
T  2547115 aacgggtcgcaaatcacctatatagaattctaaaacactcgaagtaccgacccgagagaaaaaagtcataaagaatggatgtaaaggatttggcagacca 2547016  T
Q  433 cctttatttttaatgcattgtattttacctttcctttacgtttctgcaatttaaacttaatgccttaactttgcttttaaaaccttttttctgtcgaaag 532  Q
    ||||||||||     ||||||||||||||||||||||| |||||||||||||||||||||||||||  ||||||||||||||||||||||| ||||||||    
T  2547015 cctttatttta----cattgtattttacctttcctttaagtttctgcaatttaaacttaatgccttttctttgcttttaaaaccttttttccgtcgaaag 2546920  T
Q  533 acgcca 538  Q
    ||||||    
T  2546919 acgcca 2546914  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 119; E-Value: 2e-60
Query Start/End: Original strand, 318 - 534
Target Start/End: Complemental strand, 17600754 - 17600539
Alignment:
Q  318 agttttccata-gaaaaacgggtcgcaaatcacctatacaaaattctaaaacattcaaagtaccggagcgagagaaaagagtcataaagaatgtatgtaa 416  Q
    ||||||||||| | |||||| ||||||||||||||||||| |||||||||||| || |||||||||  |||||| |||||||||||||||||||||||||    
T  17600754 agttttccataaggaaaacgtgtcgcaaatcacctatacagaattctaaaacactcgaagtaccggcacgagaggaaagagtcataaagaatgtatgtaa 17600655  T
Q  417 aggatttgtcgaaccacctttatttttaatgcattgtattttacctttcctttacgtttctgcaatttaaacttaatgccttaactttgcttttaaaacc 516  Q
    |||||||||||||| ||||||||||||||||| |||||| ||| |||||||||| |||| || ||||||||| |  | |||| ||||| |||||||||||    
T  17600654 aggatttgtcgaacaacctttatttttaatgctttgtatgttatctttcctttaagtttatggaatttaaacct--ttcctttacttttcttttaaaacc 17600557  T
Q  517 ttttttctgtcgaaagac 534  Q
    |||||| |||||||||||    
T  17600556 ttttttttgtcgaaagac 17600539  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 97; E-Value: 2e-47
Query Start/End: Original strand, 238 - 500
Target Start/End: Complemental strand, 24832670 - 24832402
Alignment:
Q  238 agacaagcgtttgtctacatggaagtagtgctgattgtgggattcgtttctttccaaattagtatctttgtattaataagagttttccataga-aaaacg 336  Q
    ||||||||| ||||||||||||||| |||| ||||  || |||| ||||||||| |  ||| |  || ||||| ||||| |||||| |||||  ||||||    
T  24832670 agacaagcggttgtctacatggaaggagtggtgatcatgagattagtttctttctac-ttatttcctatgtataaataatagtttttcatagggaaaacg 24832572  T
Q  337 ggtcgcaaatcacctatacaaaattctaaaacattcaaagtaccggagcgagagaaaagagtcataaagaatgtatgtaaaggatttgtcgaaccacctt 436  Q
    ||||||||||| |||||||| |||| ||||||| || ||||| ||| || |||||||||||||||||||||||||||||||| ||||||||||||||| |    
T  24832571 ggtcgcaaatcgcctatacagaatt-taaaacactcgaagtatcggcgcaagagaaaagagtcataaagaatgtatgtaaagaatttgtcgaaccaccat 24832473  T
Q  437 tatttttaatgca-------ttgtattttacctttcctttacgtttctgcaatttaaacttaatgccttaa 500  Q
    |||||||||||||       |||||||||  |||| ||||| |||||||||||||||||||||||| ||||    
T  24832472 tatttttaatgcacttgcatttgtattttttcttttctttaagtttctgcaatttaaacttaatgcattaa 24832402  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 90; E-Value: 3e-43
Query Start/End: Original strand, 318 - 540
Target Start/End: Complemental strand, 3743608 - 3743380
Alignment:
Q  318 agttttccataga-aaaacgggtcgcaaatcacctatacaaaattctaaaa-cattcaaagtaccggagcgagagaaaagagtcataaagaatgtatgta 415  Q
    ||||||||| ||| |||||||||||||||||||||||||| |||||||||| || || ||||||||| ||   |||||||||||||||| |||||||  |    
T  3743608 agttttccaaagagaaaacgggtcgcaaatcacctatacataattctaaaaacactcgaagtaccggtgctgaagaaaagagtcataaaaaatgtataca 3743509  T
Q  416 aaggatttgtcgaaccacctttatttttaatgcattgtattttacctttcctttacgtttctgcaattt-aaactt-aatgccttaactttgctttt--a 511  Q
    ||||||||||||||||||||||||||||||||| ||||| ||||  ||||||| | | ||||||||||| |||||| |||||||| ||||| || ||  |    
T  3743508 aaggatttgtcgaaccacctttatttttaatgccttgtactttatttttccttcaagattctgcaatttcaaacttgaatgcctttactttactgttaaa 3743409  T
Q  512 aaaccttttttctgtcgaaagacgccaca 540  Q
    ||||| ||||| ||||||||||| |||||    
T  3743408 aaaccctttttttgtcgaaagacaccaca 3743380  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 80; E-Value: 3e-37
Query Start/End: Original strand, 331 - 493
Target Start/End: Original strand, 4173452 - 4173615
Alignment:
Q  331 aaaacgggtcgcaaatcacctatacaaaattctaaaacattcaaagtaccggagcgagagaaaagagtcataaagaatgtatgtaaaggatttgtcgaac 430  Q
    ||||||||||||||||| |||||| | |||||||||||| || ||||| ||  |||||||||||||||||||||||||||||||||||||||||||||||    
T  4173452 aaaacgggtcgcaaatcgcctatagagaattctaaaacactcgaagtatcgacgcgagagaaaagagtcataaagaatgtatgtaaaggatttgtcgaac 4173551  T
Q  431 cacctttatttttaatgca-ttgtattttacctttcctttacgtttctgcaatttaaacttaat 493  Q
     |  ||||| ||||||||| ||| ||||    ||| ||||| ||||||||||||||||||||||    
T  4173552 tagttttatctttaatgcacttgcatttgtatttttctttaagtttctgcaatttaaacttaat 4173615  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 70; E-Value: 3e-31
Query Start/End: Original strand, 73 - 166
Target Start/End: Complemental strand, 2545864 - 2545771
Alignment:
Q  73 ttggggggcaatttgttagctggtattttcaccagcctcatttaatgtggtcaacattggttgatttttactcttgcaggaattgaagtctttt 166  Q
    ||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||  |||| |||||||||||||||||| ||||||||||    
T  2545864 ttgggaggcaatttgttagctggtaatttcaccagcctcatttaatgtggtcaacattacttgacttttactcttgcaggaatcgaagtctttt 2545771  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 85 - 226
Target Start/End: Complemental strand, 20146371 - 20146231
Alignment:
Q  85 ttgttagctggtattttcaccagcctcatttaatgtggtcaacattggttgatttttactcttgcaggaattgaagtcttttcttcaatcaaaggagttt 184  Q
    ||||||| ||||||||||| |||| | || |||||||||||||||| ||||| ||||||| ||  |||||| ||||  ||| ||||  | ||||||||||    
T  20146371 ttgttagatggtattttcatcagcgttatgtaatgtggtcaacattagttgacttttactgttaaaggaatcgaagcttttccttctgttaaaggagttt 20146272  T
Q  185 caaagagatgttggacttagcattgaaaagtctcgaagcctt 226  Q
    ||| ||||||||||| |||||| | |||||||| ||||||||    
T  20146271 caacgagatgttggagttagca-taaaaagtcttgaagcctt 20146231  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 88 - 230
Target Start/End: Original strand, 14986744 - 14986882
Alignment:
Q  88 ttagctggtattttcaccagcctcatttaatgtggtcaacattggttgatttttactcttgcaggaattgaagtctttt-cttcaatcaaaggagtttca 186  Q
    ||||||||||||||||||||||||||||     |||||||||| ||||| ||||||||||||||||||  |||| |||| || |||| |||| |||||||    
T  14986744 ttagctggtattttcaccagcctcattt-----ggtcaacattagttgacttttactcttgcaggaatccaagtatttttctccaataaaagaagtttca 14986838  T
Q  187 aagagatgttggacttagcattgaaaagtctcgaagccttaaag 230  Q
    | |||||||| |||||  |||  ||| ||| | |||||||||||    
T  14986839 acgagatgttagacttcacatgaaaatgtcccaaagccttaaag 14986882  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 88 - 230
Target Start/End: Original strand, 15416355 - 15416493
Alignment:
Q  88 ttagctggtattttcaccagcctcatttaatgtggtcaacattggttgatttttactcttgcaggaattgaagtctttt-cttcaatcaaaggagtttca 186  Q
    ||||||||||||||||||||||||||||     |||||||||| ||||| ||||||||||||||||||  |||| |||| || |||| |||| |||||||    
T  15416355 ttagctggtattttcaccagcctcattt-----ggtcaacattagttgacttttactcttgcaggaatccaagtatttttctccaataaaagaagtttca 15416449  T
Q  187 aagagatgttggacttagcattgaaaagtctcgaagccttaaag 230  Q
    | |||||||| |||||  |||  ||| ||| | |||||||||||    
T  15416450 acgagatgttagacttcacatgaaaatgtcccaaagccttaaag 15416493  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 86 - 205
Target Start/End: Original strand, 4173104 - 4173222
Alignment:
Q  86 tgttagctggtattttcaccagcctcatttaatgtggtcaacattggttgatttttactcttgcaggaattgaagtcttttcttcaatcaaaggagtttc 185  Q
    |||||||||||||||||||| |||| |||||||||| |||||||| ||||| || || | ||||||| ||  |||| ||| ||||||||||| ||| |||    
T  4173104 tgttagctggtattttcacctgccttatttaatgtgttcaacattagttgacttataattttgcaggtatcaaagtatttccttcaatcaaaagag-ttc 4173202  T
Q  186 aaagagatgttggacttagc 205  Q
     | |||||||||||| ||||    
T  4173203 gacgagatgttggacctagc 4173222  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 338 - 442
Target Start/End: Original strand, 10649240 - 10649344
Alignment:
Q  338 gtcgcaaatcacctatacaaaattctaaaacattcaaagtaccggagcgagagaaaagagtcataaagaatgtatgtaaa-ggatttgtcgaaccacctt 436  Q
    |||||||||||| |||| ||| ||| |||||| || |||||||||  |||||||||||||| ||||||||||||||||||  |||||  | |||||||||    
T  10649240 gtcgcaaatcacttatagaaatttc-aaaacactcgaagtaccggcacgagagaaaagagttataaagaatgtatgtaaactgattttccaaaccacctt 10649338  T
Q  437 tatttt 442  Q
    ||||||    
T  10649339 tatttt 10649344  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 357 - 489
Target Start/End: Complemental strand, 18046501 - 18046371
Alignment:
Q  357 aaattctaaaacattcaaagtaccggagcgagagaaaagagtcataaagaatgtatgtaa-aggatttgtcgaaccacctttatttttaatgcattgtat 455  Q
    ||||||||||||| |  ||||||||| |||||| |||||   |||| | ||||| ||||| | |||||||||||||||||||| |||||||||| || |     
T  18046501 aaattctaaaacaattgaagtaccggcgcgagaaaaaagg--catacataatgtgtgtaatatgatttgtcgaaccaccttta-ttttaatgcaatgcaa 18046405  T
Q  456 tttacctttcctttacgtttctgcaatttaaact 489  Q
    ||||||||| ||||| |||| |||  ||||||||    
T  18046404 tttaccttttctttaagtttttgcgttttaaact 18046371  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 84 - 120
Target Start/End: Complemental strand, 2563233 - 2563197
Alignment:
Q  84 tttgttagctggtattttcaccagcctcatttaatgt 120  Q
    |||||||||||||| ||||||||||||||||||||||    
T  2563233 tttgttagctggtaatttcaccagcctcatttaatgt 2563197  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 387 - 442
Target Start/End: Original strand, 9022558 - 9022614
Alignment:
Q  387 agagaaaagagtcataaagaatgtatgtaa-aggatttgtcgaaccacctttatttt 442  Q
    |||| ||||||||||| |||||||||||||   ||||| ||||||||||||||||||    
T  9022558 agagtaaagagtcatacagaatgtatgtaatctgatttctcgaaccacctttatttt 9022614  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 109 - 165
Target Start/End: Original strand, 10648940 - 10648996
Alignment:
Q  109 ctcatttaatgtggtcaacattggttgatttttactcttgcaggaattgaagtcttt 165  Q
    |||||||||||||||||||||||||||| | |||   ||||| |||| |||||||||    
T  10648940 ctcatttaatgtggtcaacattggttgactattatctttgcaagaatcgaagtcttt 10648996  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 173; Significance: 9e-93; HSPs: 28)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 173; E-Value: 9e-93
Query Start/End: Original strand, 234 - 540
Target Start/End: Complemental strand, 28371341 - 28371034
Alignment:
Q  234 tgggagacaagcgtttgtctacatggaagtagtgctgattgtgggattcgtttctttccaaattagtatctt-tgtattaataagagttttccataga-a 331  Q
    ||||||||||||| ||||||||||||||| ||||||||| ||| |||| |||||||||||| ||| | |||| ||||| ||||  ||||||||||||  |    
T  28371341 tgggagacaagcggttgtctacatggaaggagtgctgatcgtgagattagtttctttccaagttatt-tcttatgtataaatagtagttttccataggga 28371243  T
Q  332 aaacgggtcgcaaatcacctatacaaaattctaaaacattcaaagtaccggagcgagagaaaagagtcataaagaatgtatgtaaaggatttgtcgaacc 431  Q
    ||| ||||||||||||||||||| |||||||||||||| || ||||||| | | ||| ||||| ||||||||||||||||||||||| ||||||||||||    
T  28371242 aaatgggtcgcaaatcacctatataaaattctaaaacactcgaagtaccagtgtgagtgaaaaaagtcataaagaatgtatgtaaagtatttgtcgaacc 28371143  T
Q  432 acctttatttttaatgcattgtattttacctttcctttacgtttctgcaatttaaacttaatgccttaactttgcttttaaaaccttttttctgtcgaaa 531  Q
     ||||||||||||||||||||||||||||  |||||||| |||||||||||||||||||||||| || ||||||||||||||||| ||||||||||||||    
T  28371142 tcctttatttttaatgcattgtattttactgttcctttaagtttctgcaatttaaacttaatgcatttactttgcttttaaaaccatttttctgtcgaaa 28371043  T
Q  532 gacgccaca 540  Q
    |||||||||    
T  28371042 gacgccaca 28371034  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 122; E-Value: 2e-62
Query Start/End: Original strand, 319 - 535
Target Start/End: Complemental strand, 9218298 - 9218079
Alignment:
Q  319 gttttccataga-aaaacgggtcgcaaatcacctatacaaaattctaaaacattcaaagtaccggagcgagagaaaagagtcataaagaatgtatgtaaa 417  Q
    |||||||||||  ||||||||||||||||||| |||||| |||||||||||| || ||||||||  ||||||||||||  ||||| ||||||||||||||    
T  9218298 gttttccatagggaaaacgggtcgcaaatcacatatacagaattctaaaacactcgaagtaccgacgcgagagaaaag--tcatacagaatgtatgtaaa 9218201  T
Q  418 ggatttgtcgaaccacctttatttttaatgcattgtattttacctttcctttacgtttctgcaatttaaacttaatgccttaactttgcttttaaaacc- 516  Q
     |||||||||||||| |||||||||||||||||||||||||| |||||||||| |||||||||||||||||||||||  || ||||||||||||||| |     
T  9218200 tgatttgtcgaaccatctttatttttaatgcattgtattttatctttcctttaagtttctgcaatttaaacttaatgtttttactttgcttttaaaaacc 9218101  T
Q  517 ---ttttttctgtcgaaagacg 535  Q
       |||||||||||||||||||    
T  9218100 tttttttttctgtcgaaagacg 9218079  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 83; E-Value: 5e-39
Query Start/End: Original strand, 85 - 203
Target Start/End: Original strand, 23539981 - 23540099
Alignment:
Q  85 ttgttagctggtattttcaccagcctcatttaatgtggtcaacattggttgatttttactcttgcaggaattgaagtcttttcttcaatcaaaggagttt 184  Q
    ||||||||| ||||| |||||||||||||||||||||||||| ||| ||||| |||||||||||||| | ||||||||||||||||||||||||||||||    
T  23539981 ttgttagctcgtattgtcaccagcctcatttaatgtggtcaatattagttgacttttactcttgcagtatttgaagtcttttcttcaatcaaaggagttt 23540080  T
Q  185 caaagagatgttggactta 203  Q
    | | |||||||||||||||    
T  23540081 cgacgagatgttggactta 23540099  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 81; E-Value: 7e-38
Query Start/End: Original strand, 318 - 449
Target Start/End: Original strand, 23540219 - 23540351
Alignment:
Q  318 agttttccataga-aaaacgggtcgcaaatcacctatacaaaattctaaaacattcaaagtaccggagcgagagaaaagagtcataaagaatgtatgtaa 416  Q
    ||||||||||||  ||||||||| |||||||||||||||| |||||||||| | ||||||||||||  | |||||||||| |||||||||||||||||||    
T  23540219 agttttccatagggaaaacgggttgcaaatcacctatacagaattctaaaatactcaaagtaccggctcaagagaaaagaatcataaagaatgtatgtaa 23540318  T
Q  417 aggatttgtcgaaccacctttatttttaatgca 449  Q
    | ||||| |||||||||||||||||||||||||    
T  23540319 aagatttttcgaaccacctttatttttaatgca 23540351  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 75; E-Value: 3e-34
Query Start/End: Original strand, 411 - 537
Target Start/End: Complemental strand, 10661095 - 10660970
Alignment:
Q  411 atgtaaaggatttgtcgaaccacctttatttttaatgcattgtattttacctttcctttacgtttctgcaatttaaacttaatgccttaactttgctttt 510  Q
    |||||||||||||||||||||||||||||||| |||||||||  ||| ||||||||||||  || ||||||||||||||||||| ||| |||||||||||    
T  10661095 atgtaaaggatttgtcgaaccacctttattttgaatgcattgcgtttcacctttcctttaacttcctgcaatttaaacttaatgtctttactttgctttt 10660996  T
Q  511 aaaaccttttttctgtcgaaagacgcc 537  Q
    ||||||  ||||||||| |||||||||    
T  10660995 aaaacc-cttttctgtccaaagacgcc 10660970  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 74; E-Value: 1e-33
Query Start/End: Original strand, 318 - 490
Target Start/End: Original strand, 9286326 - 9286498
Alignment:
Q  318 agttttccataga-aaaacgggtcgcaaatcacctatacaaaattctaaaacattcaaagtaccggagcgagagaaaagagtcataaagaatgtatgtaa 416  Q
    ||||||||||||  ||||||||||||||||||| |||| ||| ||||| |||| || ||||||||| ||||||||||| ||| ||| | |||||||||||    
T  9286326 agttttccatagggaaaacgggtcgcaaatcacatatagaaa-ttctacaacactcgaagtaccggtgcgagagaaaatagttatacaaaatgtatgtaa 9286424  T
Q  417 aggatttgtcgaaccacctttatttttaatgcattgtattttacctttcctttacgtttctgcaatttaaactt 490  Q
    |||||||||||||| |||||||||||||||||| || | |||| ||||  |||| ||||||||| ||| |||||    
T  9286425 aggatttgtcgaactacctttatttttaatgcaatgcaatttatcttttttttaagtttctgcacttttaactt 9286498  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 70; E-Value: 3e-31
Query Start/End: Original strand, 21 - 230
Target Start/End: Complemental strand, 28371658 - 28371450
Alignment:
Q  21 tcaaaaatgtcaattctctccgttgattatattccgtcgaaaatggcatttcttggggggcaatttgttagctggtattttcaccagcctcatttaatgt 120  Q
    ||||||||||||||||||||  |||| | ||||| |||||||||  ||||| |||| || ||||||||||| |||||||||||| ||| | |||||||||    
T  28371658 tcaaaaatgtcaattctctcttttgaatgtattcagtcgaaaataacattttttggtgg-caatttgttagttggtattttcactagcataatttaatgt 28371560  T
Q  121 ggtcaacattggttgatttttactcttgcaggaattgaagtcttttcttcaatcaaaggagtttcaaagagatgttggacttagcattgaaaagtctcga 220  Q
    || ||| ||| ||||| ||||| ||| | |||||| |||  |||| | ||| | ||||||||||  | |||||||||||||||||||  |||||||| ||    
T  28371559 ggccaatattagttgacttttattctggtaggaatcgaaacctttccctcagttaaaggagttttgacgagatgttggacttagcatgaaaaagtctgga 28371460  T
Q  221 agccttaaag 230  Q
    ||||||||||    
T  28371459 agccttaaag 28371450  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 68; E-Value: 4e-30
Query Start/End: Original strand, 318 - 452
Target Start/End: Complemental strand, 16600725 - 16600591
Alignment:
Q  318 agttttccatag-aaaaacgggtcgcaaatcacctatacaaaattctaaaacattcaaagtaccggagcgagagaaaagagtcataaagaatgtatgtaa 416  Q
    |||||||||||| |||||||||| ||||||||| |||| ||| ||||| |||| || ||||||||| ||||||||| ||||| ||| | |||||| ||||    
T  16600725 agttttccataggaaaaacgggttgcaaatcacttatagaaa-ttctacaacactcgaagtaccggcgcgagagaatagagttatacataatgtacgtaa 16600627  T
Q  417 aggatttgtcgaaccacctttatttttaatgcattg 452  Q
    ||||||||||||||||| ||||||||||||||||||    
T  16600626 aggatttgtcgaaccacatttatttttaatgcattg 16600591  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 61; E-Value: 6e-26
Query Start/End: Original strand, 256 - 418
Target Start/End: Complemental strand, 10661911 - 10661748
Alignment:
Q  256 atggaagtagtgctgattgtgggattcgtttctttccaaattagtatctttgtattaataagagttttccataga-aaaacgggtcgcaaatcacctata 354  Q
    ||||||| |||| |||| |||||||| |||||||||||  ||  | ||| ||||| |||||||||||||||| |  ||||| ||||||||||||||||||    
T  10661911 atggaaggagtgttgatcgtgggattagtttctttccag-ttgttttctatgtataaataagagttttccattgggaaaacaggtcgcaaatcacctata 10661813  T
Q  355 caaaattctaaaacat-tcaaagtaccggagcgagagaaaagagtcataaagaatgtatgtaaag 418  Q
    || ||||||||||  | |||| ||||||| |||| | ||||||||||||||||||||||||||||    
T  10661812 cagaattctaaaaactctcaatgtaccggtgcgataaaaaagagtcataaagaatgtatgtaaag 10661748  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 337 - 479
Target Start/End: Complemental strand, 13110345 - 13110204
Alignment:
Q  337 ggtcgcaaatcacctatacaaaattctaaaacattcaaagtaccggagcgagagaaaagagtcataaagaatgtatgtaaaggatttgtcgaaccacctt 436  Q
    ||||||||||||| |||| ||| ||||| |||| || ||||||||| | ||||||||||||| ||| | ||| |||||| | ||||||| ||||||||||    
T  13110345 ggtcgcaaatcacttatagaaa-ttctacaacactcgaagtaccggcgagagagaaaagagttatacaaaatatatgtatatgatttgttgaaccacctt 13110247  T
Q  437 tatttttaatgcattgtattttacctttcctttacgtttctgc 479  Q
    ||||||||||||| || | |||| |||| ||||| ||||||||    
T  13110246 tatttttaatgcaatgcaatttatcttttctttaagtttctgc 13110204  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 88 - 166
Target Start/End: Complemental strand, 10662187 - 10662109
Alignment:
Q  88 ttagctggtattttcaccagcctcatttaatgtggtcaacattggttgatttttactcttgcaggaattgaagtctttt 166  Q
    ||||||| || ||||||||| |||||||||||||||||||||| ||||| |||||||||||||||| | ||||||||||    
T  10662187 ttagctgataatttcaccagactcatttaatgtggtcaacattagttgacttttactcttgcaggactcgaagtctttt 10662109  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 402 - 449
Target Start/End: Original strand, 26136195 - 26136242
Alignment:
Q  402 aaagaatgtatgtaaaggatttgtcgaaccacctttatttttaatgca 449  Q
    |||||||||||||||||||||||||| |||||||||||||||||||||    
T  26136195 aaagaatgtatgtaaaggatttgtcggaccacctttatttttaatgca 26136242  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 339 - 479
Target Start/End: Original strand, 18672125 - 18672261
Alignment:
Q  339 tcgcaaatcacctatacaaaattctaaaacattcaaagtaccggagcgagagaaaagagtcataaagaatgtatgtaaaggatttgtcgaaccaccttta 438  Q
    ||||||||||| |||| ||| ||||| |||| || |||||| || | ||||||||||||| ||| | |||||||||||| ||||||| ||   |||||||    
T  18672125 tcgcaaatcacttatagaaa-ttctacaacactcgaagtactggcgagagagaaaagagttatacaaaatgtatgtaaatgatttgttga---accttta 18672220  T
Q  439 tttttaatgcattgtattttacctttcctttacgtttctgc 479  Q
    ||||||||||| |||| |||| |||| ||| | ||||||||    
T  18672221 tttttaatgcaatgtaatttatcttttcttgaagtttctgc 18672261  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 384 - 490
Target Start/End: Original strand, 22713661 - 22713767
Alignment:
Q  384 gcgagagaaaagagtcataaagaatgtatgtaaaggatttgtcgaaccacctttatttttaatgcattgtattttacctttcctttacgtttctgcaatt 483  Q
    |||| |||||||| | ||| ||||| ||||||||| ||||||| |||||||||||||||||||||| ||||  ||| |||| ||||| |||||| || ||    
T  22713661 gcgatagaaaagatttatatagaatatatgtaaagaatttgtcaaaccacctttatttttaatgcaatgtaaattatcttttctttaagtttctacactt 22713760  T
Q  484 taaactt 490  Q
    | |||||    
T  22713761 ttaactt 22713767  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 318 - 382
Target Start/End: Original strand, 24577344 - 24577408
Alignment:
Q  318 agttttccatagaaaaacgggtcgcaaatcacctatacaaaattctaaaacattcaaagtaccgg 382  Q
    |||||| ||||| ||||||||| |||||||||||||||| |||||||||||| || |||||||||    
T  24577344 agtttttcataggaaaacgggtggcaaatcacctatacagaattctaaaacaatcgaagtaccgg 24577408  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 340 - 475
Target Start/End: Complemental strand, 25095187 - 25095052
Alignment:
Q  340 cgcaaatcacctatacaaaattctaaaacattcaaagtaccggagcgagagaaaagagtcataaagaatgtatgt-aaaggatttgtcgaaccaccttta 438  Q
    |||||||||| |||| ||| ||||||||||  | ||||||||| |||||| |||||||| ||| |  |||||||| |||  |||||||||||||||||||    
T  25095187 cgcaaatcacttatagaaa-ttctaaaacacccgaagtaccggcgcgagataaaagagttatacatgatgtatgtaaaattatttgtcgaaccaccttta 25095089  T
Q  439 tttttaatgcattgtattttacctttcctttacgttt 475  Q
    || | |||||| || | |||| |||| ||||| ||||    
T  25095088 ttataaatgcaatgcaatttatcttttctttaagttt 25095052  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 318 - 490
Target Start/End: Original strand, 27123582 - 27123752
Alignment:
Q  318 agttttccatag-aaaaacgggtcgcaaatcacctatacaaaattctaaaacattcaaagtaccggagcgagagaaaagagtcataaagaatgtatgtaa 416  Q
    |||||||||||| ||||| | |||||||||||  |||| ||| ||||| |||| |||  ||||||  ||||||||||||||| ||| | |||||||||||    
T  27123582 agttttccataggaaaaatgagtcgcaaatcaattatagaaa-ttctacaacactca--gtaccgatgcgagagaaaagagttatacataatgtatgtaa 27123678  T
Q  417 -aggatttgtcgaaccacctttatttttaatgcattgtattttacctttcctttacgtttctgcaatttaaactt 490  Q
       ||||| |||||||||||||| |||||||||| || | |||| | |||||||| |||| |||  |||||||||    
T  27123679 tctgatttatcgaaccaccttta-ttttaatgcaatgcaatttatcattcctttaagtttatgcgttttaaactt 27123752  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 19 - 166
Target Start/End: Complemental strand, 16601128 - 16600980
Alignment:
Q  19 tttcaaaaatgtcaattctctccgttgat-tatattccgtcgaaaatggcatttcttggggggcaatttgttagctggtattttcaccagcctcatttaa 117  Q
    |||||||||||||||||| |||| | ||  | | ||| |||||||||| ||||| ||| ||| |||||| |||||  ||| ||||| ||| |||||||||    
T  16601128 tttcaaaaatgtcaattccctccttcgaaattttttcagtcgaaaatgacattttttgaggg-caatttattagcctgtaatttcaacagactcatttaa 16601030  T
Q  118 tgtggtcaacattggttga-tttttactcttgcaggaattgaagtctttt 166  Q
    ||  ||||||||| ||||| ||||||   |||||||||||||||| ||||    
T  16601029 tgcagtcaacattagttgactttttatctttgcaggaattgaagtatttt 16600980  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 387 - 438
Target Start/End: Original strand, 15340931 - 15340983
Alignment:
Q  387 agagaaaagagtcataaagaatgtatgtaaa-ggatttgtcgaaccaccttta 438  Q
    |||||||||||||||| ||||||||||||||  |||||||| |||||||||||    
T  15340931 agagaaaagagtcatacagaatgtatgtaaactgatttgtcaaaccaccttta 15340983  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 387 - 438
Target Start/End: Original strand, 15429996 - 15430048
Alignment:
Q  387 agagaaaagagtcataaagaatgtatgtaaa-ggatttgtcgaaccaccttta 438  Q
    |||||||||||||||| ||||||||||||||  |||||||| |||||||||||    
T  15429996 agagaaaagagtcatacagaatgtatgtaaactgatttgtcaaaccaccttta 15430048  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 387 - 438
Target Start/End: Original strand, 15521300 - 15521352
Alignment:
Q  387 agagaaaagagtcataaagaatgtatgtaaa-ggatttgtcgaaccaccttta 438  Q
    |||||||||||||||| ||||||||||||||  |||||||| |||||||||||    
T  15521300 agagaaaagagtcatacagaatgtatgtaaactgatttgtcaaaccaccttta 15521352  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 387 - 438
Target Start/End: Original strand, 41652021 - 41652073
Alignment:
Q  387 agagaaaagagtcataaagaatgtatgtaa-aggatttgtcgaaccaccttta 438  Q
    |||||||||||||||| |||||||||||||   ||||||||||||||||||||    
T  41652021 agagaaaagagtcatacagaatgtatgtaatttgatttgtcgaaccaccttta 41652073  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #23
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 429 - 475
Target Start/End: Complemental strand, 9006976 - 9006930
Alignment:
Q  429 accacctttatttttaatgcattgtattttacctttcctttacgttt 475  Q
    ||||||||||||||||||||| |  ||||||||||||||||| ||||    
T  9006976 accacctttatttttaatgcaatacattttacctttcctttaagttt 9006930  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #24
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 19 - 92
Target Start/End: Original strand, 24680572 - 24680644
Alignment:
Q  19 tttcaaaaatgtcaattctctccgttgattatattccgtcgaaaatggcatttcttggggggcaatttgttagc 92  Q
    ||||||||||||||||||||||| | ||   | ||| || ||||||||||||| |||| |||||||||||||||    
T  24680572 tttcaaaaatgtcaattctctccttcgaactttttcagttgaaaatggcattt-ttggagggcaatttgttagc 24680644  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #25
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 387 - 438
Target Start/End: Complemental strand, 23355539 - 23355487
Alignment:
Q  387 agagaaaagagtcataaagaatgtatgtaa-aggatttgtcgaaccaccttta 438  Q
    |||||||||||||||| | |||||||||||   ||||||||||||||||||||    
T  23355539 agagaaaagagtcatacaaaatgtatgtaatctgatttgtcgaaccaccttta 23355487  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #26
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 54 - 130
Target Start/End: Original strand, 24092825 - 24092900
Alignment:
Q  54 ccgtcgaaaatggcatttcttggggggcaatttgttagctggtattttcaccagcctcatttaatgtggtcaacatt 130  Q
    ||||||||||||| |||| |||||||||| |||| ||||  ||| ||||  ||| ||||||||||||||| ||||||    
T  24092825 ccgtcgaaaatggtattt-ttggggggcagtttgatagcctgtaatttcgacaggctcatttaatgtggttaacatt 24092900  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #27
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 387 - 438
Target Start/End: Complemental strand, 32352269 - 32352217
Alignment:
Q  387 agagaaaagagtcataaagaatgtatgtaa-aggatttgtcgaaccaccttta 438  Q
    |||||||||||||||| | ||||||||||| | ||||||||||||||| ||||    
T  32352269 agagaaaagagtcatacaaaatgtatgtaatatgatttgtcgaaccactttta 32352217  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #28
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 387 - 438
Target Start/End: Complemental strand, 32368930 - 32368878
Alignment:
Q  387 agagaaaagagtcataaagaatgtatgtaa-aggatttgtcgaaccaccttta 438  Q
    |||||||||||||||| | ||||||||||| | ||||||||||||||| ||||    
T  32368930 agagaaaagagtcatacaaaatgtatgtaatatgatttgtcgaaccactttta 32368878  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 170; Significance: 6e-91; HSPs: 18)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 170; E-Value: 6e-91
Query Start/End: Original strand, 234 - 542
Target Start/End: Complemental strand, 18929543 - 18929235
Alignment:
Q  234 tgggagacaagcgtttgtctacatggaagtagtgctgattgtgggattcgtttctttccaaattagtatctttgtattaataagagttttccataga-aa 332  Q
    ||||||||||||| ||||||||||||||| |||| |||| |||||||| |||||||||||| ||| | ||| || || ||||  ||||||||| ||  ||    
T  18929543 tgggagacaagcggttgtctacatggaaggagtgttgatcgtgggattagtttctttccaagttattttctatgcataaatagtagttttccaaagggaa 18929444  T
Q  333 aacgggtcgcaaatcacctatacaaaattctaaaacattcaaagtaccggagcgagagaaaagagtcataaagaatgtatgtaaaggatttgtcgaacca 432  Q
    || |||| |||||||||||||| | |||||||||||| || ||||||||| | ||||||| | |||||||||||||||||||||| ||||| ||||||||    
T  18929443 aatgggttgcaaatcacctatatagaattctaaaacactcgaagtaccggcgtgagagaagatagtcataaagaatgtatgtaaaagatttatcgaacca 18929344  T
Q  433 cctttatttttaatgcattgtattttacctttcctttacgtttctgcaatttaaacttaatgccttaactttgcttttaaaaccttttttctgtcgaaag 532  Q
    |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |||||||||||||||||| |||| ||||||||     
T  18929343 cctttatttttaatgcattgtattttacctttcctttaagtttctgcaatttaaacttaatgcctttactttgcttttaaaacct-ttttatgtcgaaat 18929245  T
Q  533 acgccacagg 542  Q
    ||||||||||    
T  18929244 acgccacagg 18929235  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 163; E-Value: 8e-87
Query Start/End: Original strand, 248 - 540
Target Start/End: Complemental strand, 26651133 - 26650839
Alignment:
Q  248 ttgtctacatggaagtagtgctgattgtgggattcgtttctttccaaattagtatctttgtattaataagagttttccataga-aaaacgggtcgcaaat 346  Q
    ||||||||||||||  |||||| || |||||||| ||||||||| |  |   | ||| ||||| ||||||||||||||||||  ||||| ||||||||||    
T  26651133 ttgtctacatggaatgagtgctaatcgtgggattggtttctttctagttatttttctatgtataaataagagttttccatagggaaaacaggtcgcaaat 26651034  T
Q  347 cacctatacaaaattctaaaacattcaaagtaccggagcgagagaaaagagtcataaagaatgtatgtaaaggatttgtcgaaccacctttatttttaat 446  Q
    |||||||||| |||||||||||| || ||| ||||  |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  26651033 cacctatacagaattctaaaacactcgaagcaccgacgcgagagaaaagagtcataaagaatgtatgtaaaggatttgtcgaaccacctttatttataat 26650934  T
Q  447 gcattgtattttacctttcctttacgtttctgcaatttaaacttaatgccttaactttgcttttaaaa-ccttttttctgtcgaaagacgccaca 540  Q
     ||||||||||||||||||||||| ||||||||||||||||||| ||| ||| ||||||||||||||| ||||||||||||||||||| ||||||    
T  26650933 ccattgtattttacctttcctttaagtttctgcaatttaaacttcatgtctttactttgcttttaaaacccttttttctgtcgaaagaagccaca 26650839  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 132; E-Value: 3e-68
Query Start/End: Original strand, 331 - 534
Target Start/End: Complemental strand, 17402932 - 17402729
Alignment:
Q  331 aaaacgggtcgcaaatcacctatacaaaattctaaaacattcaaagtaccggagcgagagaaaagagtcataaagaatgtatgtaaaggatttgtcgaac 430  Q
    ||||| |||||||||||||||||| | |||||||||||| || |||||||||  |||||||||| ||| ||||||||||||||||||||||||||  |||    
T  17402932 aaaacaggtcgcaaatcacctatatagaattctaaaacactctaagtaccggcacgagagaaaaaagttataaagaatgtatgtaaaggatttgtataac 17402833  T
Q  431 cacctttatttttaatgcattgtattttacctttcctttacgtttctgcaatttaaacttaatgccttaactttgcttttaaaaccttttttctgtcgaa 530  Q
    |||||||||||||||||||||||||||||  ||||||||| |||||||||||||||||||| |||||| ||||||||||||||||||||||| ||| |||    
T  17402832 cacctttatttttaatgcattgtattttatatttcctttaagtttctgcaatttaaacttattgcctttactttgcttttaaaaccttttttttgttgaa 17402733  T
Q  531 agac 534  Q
    ||||    
T  17402732 agac 17402729  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 122; E-Value: 2e-62
Query Start/End: Original strand, 21 - 230
Target Start/End: Complemental strand, 18929859 - 18929651
Alignment:
Q  21 tcaaaaatgtcaattctctccgttgattatattccgtcgaaaatggcatttcttggggggcaatttgttagctggtattttcaccagcctcatttaatgt 120  Q
    ||||||||||||||||||||| |||| ||||||| |||||||||| ||||| ||| |||| ||||||||||||||||||||||||| |||||||||||||    
T  18929859 tcaaaaatgtcaattctctcctttgaatatattcagtcgaaaatgacattt-ttgaggggaaatttgttagctggtattttcaccaacctcatttaatgt 18929761  T
Q  121 ggtcaacattggttgatttttactcttgcaggaattgaagtcttttcttcaatcaaaggagtttcaaagagatgttggacttagcattgaaaagtctcga 220  Q
    ||| |||||| ||||| |||||||||||||||||||||||| ||||| ||||| ||||||||||| |  |||| |||||||||||||  |||||||||||    
T  18929760 ggtgaacattagttgacttttactcttgcaggaattgaagtattttcctcaattaaaggagtttcgacaagattttggacttagcatgaaaaagtctcga 18929661  T
Q  221 agccttaaag 230  Q
    | ||||||||    
T  18929660 atccttaaag 18929651  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 117; E-Value: 2e-59
Query Start/End: Original strand, 306 - 521
Target Start/End: Original strand, 25520385 - 25520601
Alignment:
Q  306 tgtattaataagagttttccataga-aaaacgggtcgcaaatcacctatacaaaattctaaaacattcaaagtaccggagcgagagaaaagagtcataaa 404  Q
    ||||| ||||| ||||||||||||  ||||||||| |||||||||||||||| |||| ||||||| || ||||  ||| ||||||||||||||||||| |    
T  25520385 tgtataaataatagttttccatagggaaaacgggttgcaaatcacctatacagaattataaaacactcgaagtgacggcgcgagagaaaagagtcataca 25520484  T
Q  405 gaatgtatgtaaaggatttgtcgaaccacctttatttttaatgcattgtattttacctttcctttacgtttctgcaatttaaacttaatgccttaacttt 504  Q
     |||||||||||||| ||||||||||| ||||||||||||||||| |||| |||| |||| |||||  |||||||||||| ||||||||||||| |||||    
T  25520485 taatgtatgtaaaggttttgtcgaacctcctttatttttaatgcaatgtagtttatcttttctttaactttctgcaattttaacttaatgcctttacttt 25520584  T
Q  505 gcttttaaaaccttttt 521  Q
    |||||||||||||||||    
T  25520585 gcttttaaaaccttttt 25520601  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 73; E-Value: 4e-33
Query Start/End: Original strand, 331 - 490
Target Start/End: Original strand, 31404046 - 31404205
Alignment:
Q  331 aaaacgggtcgcaaatcacctatacaaaattctaaaacattcaaagtaccggagcgagagaaaagagtcataaagaatgtatgt-aaaggatttgtcgaa 429  Q
    |||| |||||||||||||| |||  ||| |||||||||| || ||||||||| ||||||||||||||| ||| ||||||||||| ||| |||||||||||    
T  31404046 aaaatgggtcgcaaatcacttattgaaa-ttctaaaacactcgaagtaccggcgcgagagaaaagagttatacagaatgtatgtaaaatgatttgtcgaa 31404144  T
Q  430 ccacctttatttttaatgcattgtattttacctttcctttacgtttctgcaatttaaactt 490  Q
    ||||||||  |||||||||| || | ||||||||| ||||| ||||||||| |||||||||    
T  31404145 ccaccttttattttaatgcaatgcaatttaccttttctttaagtttctgcattttaaactt 31404205  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 68; E-Value: 4e-30
Query Start/End: Original strand, 86 - 205
Target Start/End: Complemental strand, 26651400 - 26651281
Alignment:
Q  86 tgttagctggtattttcaccagcctcatttaatgtggtcaacattggttgatttttactcttgcaggaattgaagtcttttcttcaatcaaaggagtttc 185  Q
    ||||||| |||| |||||||||||||||||||||||||||| ||| ||||| |||||||||||||| ||| ||||| ||||||||||   ||||||||||    
T  26651400 tgttagcaggtaatttcaccagcctcatttaatgtggtcaatattagttgacttttactcttgcagaaatcgaagttttttcttcaacttaaggagtttc 26651301  T
Q  186 aaagagatgttggacttagc 205  Q
    || || ||||||||||||||    
T  26651300 aacgatatgttggacttagc 26651281  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 65; E-Value: 3e-28
Query Start/End: Original strand, 234 - 369
Target Start/End: Complemental strand, 19879117 - 19878981
Alignment:
Q  234 tgggagacaagcgtttgtctacatggaagtagtgctgattgtgggattcgtttctttccaaattagtatctttgtattaataagagttttccatag-aaa 332  Q
    ||||||||||||||||||| |||||  || |||| |||| |||||||| |||||||||||| ||| | ||| ||||  ||||  |||||||||||| |||    
T  19879117 tgggagacaagcgtttgtcaacatgagaggagtgttgatcgtgggattagtttctttccaacttattttctatgtaaaaatagtagttttccataggaaa 19879018  T
Q  333 aacgggtcgcaaatcacctatacaaaattctaaaaca 369  Q
    |||||||||||||||||||||||| ||||||||||||    
T  19879017 aacgggtcgcaaatcacctatacagaattctaaaaca 19878981  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 54; E-Value: 9e-22
Query Start/End: Original strand, 60 - 169
Target Start/End: Complemental strand, 17403307 - 17403198
Alignment:
Q  60 aaaatggcatttcttggggggcaatttgttagctggtattttcaccagcctcatttaatgtggtcaacattggttgatttttactcttgcaggaattgaa 159  Q
    |||||||||||| ||   ||| ||||| |||||||||| ||| |||||||||||||||||||||||||||| ||| | ||||||  |||||| |||||||    
T  17403307 aaaatggcatttttttttgggaaattttttagctggtaattttaccagcctcatttaatgtggtcaacattagttaacttttacctttgcagcaattgaa 17403208  T
Q  160 gtcttttctt 169  Q
    ||||||||||    
T  17403207 gtcttttctt 17403198  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 234 - 490
Target Start/End: Complemental strand, 24544126 - 24543870
Alignment:
Q  234 tgggagacaagcgtttgtctacatggaagtagtgctgattgtgggattcgtttctttccaaattagtat-ctttgtattaataagagttttccatag-aa 331  Q
    ||||||||||||| | || |||||||||| ||||||||| ||||  || | || ||||||  ||| | | || ||||| ||||  |||||||||||| ||    
T  24544126 tgggagacaagcggtagtttacatggaagaagtgctgatcgtggagttaggttttttccag-ttattttactatgtataaatagtagttttccataggaa 24544028  T
Q  332 aaacgggtcgcaaatcacctatacaaaattctaaaacattcaaagtaccggagcgagagaaaagagtcataaagaatgtatgtaaaggatttgtcgaacc 431  Q
    ||||||||| |||||||| |||| ||| ||  | |||| || ||||| ||| ||||||||||||| | ||| | ||| |||||||||||||| | |||||    
T  24544027 aaacgggtcacaaatcacttatagaaatttg-acaacactcgaagtatcggcgcgagagaaaagatttatacataatatatgtaaaggatttctggaacc 24543929  T
Q  432 acctttatttttaatgcattgtattttacctttcctttacgtttctgcaatttaaactt 490  Q
    |||||||||||||||||| || | ||||  ||||||  | |||| |||||||| |||||    
T  24543928 acctttatttttaatgcaatgcaatttatttttcctacaagtttttgcaattttaactt 24543870  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 19 - 141
Target Start/End: Original strand, 25519997 - 25520118
Alignment:
Q  19 tttcaaaaatgtcaattctctccgttgattatattccgtcgaaaatggcatttcttggggggcaatttgttagctggtattttcaccagcctcatttaat 118  Q
    ||||||||||| ||||| ||||| | |||||||||| |||||||||||||||| ||||| |||||||||||||   |||||||||  || |  |||||||    
T  25519997 tttcaaaaatgccaattatctccttcgattatattcagtcgaaaatggcattt-ttgggtggcaatttgttaggctgtattttcaaaaggccaatttaat 25520095  T
Q  119 gtggtcaacattggttgattttt 141  Q
    |  ||||||||| ||||| ||||    
T  25520096 gcagtcaacattagttgactttt 25520118  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 331 - 457
Target Start/End: Original strand, 20478255 - 20478379
Alignment:
Q  331 aaaacgggtcgcaaatcacctatacaaaattctaaaacattcaaagtaccggagcgagagaaaagagtcataaagaatgtatgtaaa-ggatttgtcgaa 429  Q
    |||| |||||||||||||  |||||| ||||||| |||| ||||| |||||| ||||| |||| |||| ||| ||||||||||||||  ||||||| | |    
T  20478255 aaaatgggtcgcaaatca--tatacataattctacaacactcaaactaccggcgcgagggaaacgagttatacagaatgtatgtaaactgatttgtag-a 20478351  T
Q  430 ccacctttatttttaatgcattgtattt 457  Q
    ||||||||| |||||||| |||| ||||    
T  20478352 ccacctttaattttaatgaattgcattt 20478379  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 329 - 442
Target Start/End: Original strand, 29891263 - 29891376
Alignment:
Q  329 gaaaaacgggtcgcaaatcacctatacaaaattctaaaacattcaaagtaccggagcgagagaaaagagtcataaagaatgtatgta-aaggatttgtcg 427  Q
    ||||||||||||||| ||||| |||| ||| || ||||||| |||||||| ||| ||||||||||||| | ||| | |||||||||| |  ||| |||||    
T  29891263 gaaaaacgggtcgcagatcacttatagaaa-ttataaaacactcaaagtatcggcgcgagagaaaagatttatacaaaatgtatgtacactgatatgtcg 29891361  T
Q  428 aaccacctttatttt 442  Q
    |||||| ||||||||    
T  29891362 aaccacatttatttt 29891376  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 387 - 438
Target Start/End: Original strand, 28760672 - 28760724
Alignment:
Q  387 agagaaaagagtcataaagaatgtatgtaaa-ggatttgtcgaaccaccttta 438  Q
    |||||||||||||||| ||||||||||||||  ||||||||||||||||||||    
T  28760672 agagaaaagagtcatatagaatgtatgtaaactgatttgtcgaaccaccttta 28760724  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 389 - 475
Target Start/End: Original strand, 17162015 - 17162101
Alignment:
Q  389 agaaaagagtcataaagaatgtatgtaa-aggatttgtcgaaccacctttatttttaatgcattgtattttacctttcctttacgttt 475  Q
    |||||||| ||||| |||||||||||||   |||||||||| ||||||||| | |||||||| || | ||||||||||||||| ||||    
T  17162015 agaaaagaatcatacagaatgtatgtaatctgatttgtcgagccaccttta-tattaatgcaatgcaatttacctttcctttaagttt 17162101  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 389 - 490
Target Start/End: Complemental strand, 17636791 - 17636690
Alignment:
Q  389 agaaaagagtcataaagaatgtatgtaaag-gatttgtcgaaccacctttatttttaatgcattgtattttacctttcctttacgtttctgcaatttaaa 487  Q
    |||||||||||||| | |||||||||||   ||||||||||||||||||||   ||||||||  | | ||||||||| ||||| ||||||||  ||||||    
T  17636791 agaaaagagtcatacaaaatgtatgtaatctgatttgtcgaaccaccttta-cattaatgcaaggcaatttaccttttctttaagtttctgcgttttaaa 17636693  T
Q  488 ctt 490  Q
    |||    
T  17636692 ctt 17636690  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 387 - 434
Target Start/End: Original strand, 15438056 - 15438104
Alignment:
Q  387 agagaaaagagtcataaagaatgtatgtaa-aggatttgtcgaaccacc 434  Q
    |||||||||||||||| |||||||||||||   ||||||||||||||||    
T  15438056 agagaaaagagtcatacagaatgtatgtaatttgatttgtcgaaccacc 15438104  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 109 - 165
Target Start/End: Original strand, 29890937 - 29890993
Alignment:
Q  109 ctcatttaatgtggtcaacattggttgatttttactcttgcaggaattgaagtcttt 165  Q
    ||||||||||| |||||||||||||||| |||||   |||||||| | |||||||||    
T  29890937 ctcatttaatgcggtcaacattggttgagttttatctttgcaggagtcgaagtcttt 29890993  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 161; Significance: 1e-85; HSPs: 29)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 161; E-Value: 1e-85
Query Start/End: Original strand, 247 - 514
Target Start/End: Original strand, 19217911 - 19218177
Alignment:
Q  247 tttgtctacatggaagtagtgctgattgtgggattcgtttctttccaaattagtatctttgtattaataagagttttccataga-aaaacgggtcgcaaa 345  Q
    |||||||||||| ||| ||||||| | |||||||| |||||||||||  ||| | | | ||||| |||||  |||||||||||  |||||||||||||||    
T  19217911 tttgtctacatgaaaggagtgctggtcgtgggattagtttctttccag-ttattttttatgtataaataactgttttccatagggaaaacgggtcgcaaa 19218009  T
Q  346 tcacctatacaaaattctaaaacattcaaagtaccggagcgagagaaaagagtcataaagaatgtatgtaaaggatttgtcgaaccacctttatttttaa 445  Q
    ||||||||||||| |||||||||| |||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||    
T  19218010 tcacctatacaaa-ttctaaaacactcaaagtaccggcgcgagagaaaagagccataaagaatgtatgtaaaggatttgtcgaaccacctttatttttaa 19218108  T
Q  446 tgcattgtattttacctttcctttacgtttctgcaatttaaacttaatgccttaactttgcttttaaaa 514  Q
    ||||||||||||||| ||||||||| |||||| |||||||||||||||||||| |||||||||||||||    
T  19218109 tgcattgtattttacatttcctttaagtttctacaatttaaacttaatgcctttactttgcttttaaaa 19218177  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 113; E-Value: 6e-57
Query Start/End: Original strand, 242 - 500
Target Start/End: Original strand, 20064388 - 20064653
Alignment:
Q  242 aagcgtttgtctacatggaagtagtgctgattgtgggattcgtttctttccaaattagtatctttgtattaataagagttttccataga-aaaacgggtc 340  Q
    ||||| |||||||||||||||  ||||||||||||||||| |||||||||||  ||| |  || ||||| ||||| ||||||||||||  ||||||||||    
T  20064388 aagcggttgtctacatggaaggtgtgctgattgtgggattagtttctttccac-ttatttactatgtataaataatagttttccatagggaaaacgggtc 20064486  T
Q  341 gcaaatcacctatacaaaattctaaaacattcaaagtaccggagcgagagaaaagagtcataaagaatgtatgtaaaggatttgtcgaaccacctttatt 440  Q
    ||||||| |||||||| |||||||||||| | |||||||||| || |||||||||||| ||||| |||||||||||| ||||||| ||||||||||||||    
T  20064487 gcaaatcgcctatacagaattctaaaacactgaaagtaccggtgcaagagaaaagagttataaaaaatgtatgtaaatgatttgttgaaccacctttatt 20064586  T
Q  441 tttaatgca-------ttgtattttacctttcctttacgtttctgcaatttaaacttaatgccttaa 500  Q
    |||||||||       || ||||||  |||| ||||| |||||||||||||||||||||||| ||||    
T  20064587 tttaatgcacttgcatttatattttttcttttctttaagtttctgcaatttaaacttaatgcattaa 20064653  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 101; E-Value: 8e-50
Query Start/End: Original strand, 234 - 500
Target Start/End: Complemental strand, 20061075 - 20060802
Alignment:
Q  234 tgggagacaagcgtttgtctacatggaagtagtgctgattgtgggattcgtttctttccaaattagtatctttgtattaataagagttttccatagaaaa 333  Q
    ||||||||||||| |||| |||||| ||  |||| |||| |||||||| ||||||||| || ||| |  || ||||| ||| | ||||||||||||   |    
T  20061075 tgggagacaagcgattgtgtacatgtaatgagtgatgatcgtgggattagtttctttc-aacttacttcctatgtataaatgatagttttccatagggta 20060977  T
Q  334 -acgggtcgcaaatcacctatacaaaattctaaaacattcaaagtaccggagcgagagaaaagagtcataaagaatgtatgtaaaggatttgtcgaacca 432  Q
     |||||| ||||||| |||||||| ||||||||||||||  || |||||| || |||||||||||||||||| |||||||||||||||||||||||||||    
T  20060976 gacgggttgcaaatcgcctatacagaattctaaaacatttgaactaccggcgcaagagaaaagagtcataaacaatgtatgtaaaggatttgtcgaacca 20060877  T
Q  433 cctttatttttaatgca-------ttgtattttacctttcctttacgtttctgcaatttaaacttaatgccttaa 500  Q
    |||||||||||||||||       |||||||||  |||| ||||| |||||||||||||||||||||||| ||||    
T  20060876 cctttatttttaatgcacttgcatttgtattttttcttttctttaagtttctgcaatttaaacttaatgcattaa 20060802  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 101; E-Value: 8e-50
Query Start/End: Original strand, 234 - 449
Target Start/End: Complemental strand, 20713443 - 20713228
Alignment:
Q  234 tgggagacaagcgtttgtctacatggaagtagtgctgattgtgggattcgtttctttccaaattagtatctttgtattaataagagttttccataga-aa 332  Q
    ||||||||||||| ||||||||||||||| ||||||||| |||||||| ||||||||| || ||| |  || ||||| ||||| ||||||||||||  ||    
T  20713443 tgggagacaagcggttgtctacatggaaggagtgctgatcgtgggattagtttctttc-aacttatttcctatgtataaataatagttttccatagggaa 20713345  T
Q  333 aacgggtcgcaaatcacctatacaaaattctaaaacattcaaagtaccggagcgagagaaaagagtcataaagaatgtatgtaaaggatttgtcgaacca 432  Q
    ||||||||||||||| | |||||| |||||||||||| || || |||||  || ||||||||||||||||||||||||||||||  ||||||| |||| |    
T  20713344 aacgggtcgcaaatcgcatatacagaattctaaaacactcgaaataccgatgcaagagaaaagagtcataaagaatgtatgtaacagatttgttgaacaa 20713245  T
Q  433 cctttatttttaatgca 449  Q
    |||||||||||||||||    
T  20713244 cctttatttttaatgca 20713228  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 98; E-Value: 5e-48
Query Start/End: Original strand, 233 - 449
Target Start/End: Original strand, 23210024 - 23210240
Alignment:
Q  233 atgggagacaagcgtttgtctacatggaagtagtgctgattgtgggattcgtttctttccaaattagtatctttgtattaataagagttttccataga-a 331  Q
    |||||||||||||| ||||||| ||||||| |||| |||| |||||||| |||||||||||  ||| |  || ||||| ||||| ||||| ||||||  |    
T  23210024 atgggagacaagcggttgtctaaatggaaggagtgttgatcgtgggattagtttctttccac-ttatttcctatgtataaataatagtttcccataggga 23210122  T
Q  332 aaacgggtcgcaaatcacctatacaaaattctaaaacattcaaagtaccggagcgagagaaaagagtcataaagaatgtatgtaaaggatttgtcgaacc 431  Q
    |||| |||||||||||   |||||| |||||||||||| || ||||||||| || ||||||||||||| |||||||||||||||||||||||||||||||    
T  23210123 aaacaggtcgcaaatcgtatatacataattctaaaacactcgaagtaccggcgcaagagaaaagagtcttaaagaatgtatgtaaaggatttgtcgaacc 23210222  T
Q  432 acctttatttttaatgca 449  Q
    || |||||||||||||||    
T  23210223 acttttatttttaatgca 23210240  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 97; E-Value: 2e-47
Query Start/End: Original strand, 234 - 500
Target Start/End: Original strand, 20058550 - 20058824
Alignment:
Q  234 tgggagacaagcgtttgtctacatggaagtagtgctgattgtgggattcgtttctttccaaattagtatctttgtattaataagagttttccata-gaaa 332  Q
    ||||||||||||| |||| | |||||||| ||||||||| |||||||| |||| ||| | | ||| |  || ||||| ||| | ||||||||||| |  |    
T  20058550 tgggagacaagcggttgtttgcatggaaggagtgctgatcgtgggattagttttttttccacttacttcctatgtataaatgatagttttccataaggta 20058649  T
Q  333 aacgggtcgcaaatcacctatacaaaattctaaaacattcaaagtaccggagcgagagaaaagagtcataaagaatgtatgtaaaggatttgtcgaacca 432  Q
     || ||| ||||||| ||||| |||||||||||||||||||||||||  | || |||||||||||||||||||||||||||||||| |||||||||||||    
T  20058650 gacaggttgcaaatcgcctatgcaaaattctaaaacattcaaagtactagcgcaagagaaaagagtcataaagaatgtatgtaaagaatttgtcgaacca 20058749  T
Q  433 cctttatttttaatgca-------ttgtattttacctttcctttacgtttctgcaatttaaacttaatgccttaa 500  Q
    |||||||||||||||||       |||||||||   |||  |||| |||||||||||||||||||||||| ||||    
T  20058750 cctttatttttaatgcaattgcatttgtattttttattttatttaagtttctgcaatttaaacttaatgcattaa 20058824  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 87; E-Value: 2e-41
Query Start/End: Original strand, 57 - 223
Target Start/End: Original strand, 20064102 - 20064265
Alignment:
Q  57 tcgaaaatggcatttcttggggggcaatttgttagctggtattttcaccagcctcatttaatgtggtcaacattggttgatttttactcttgcaggaatt 156  Q
    ||||||||| ||||| ||||||| |||||||||||||| |||||||||||||||| |||||||||||||||||  ||||| ||||||||||||||||||     
T  20064102 tcgaaaatgacattt-ttgggggacaatttgttagctgttattttcaccagcctcgtttaatgtggtcaacatcagttgacttttactcttgcaggaatc 20064200  T
Q  157 gaagtcttttcttcaatcaaaggagtttcaaagagatgttggacttagcattgaaaagtctcgaagc 223  Q
    ||||||||||||||||||||| ||| ||| | |||||||||||| ||||  | ||||||||||||||    
T  20064201 gaagtcttttcttcaatcaaaagag-ttcgacgagatgttggacctagc-gtaaaaagtctcgaagc 20064265  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 79; E-Value: 1e-36
Query Start/End: Original strand, 236 - 449
Target Start/End: Complemental strand, 25951528 - 25951315
Alignment:
Q  236 ggagacaagcgtttgtctacatggaagtagtgctgattgtgggattcgtttctttccaaattagtatctttgtattaataagagttttccataga-aaaa 334  Q
    ||||||||||| ||||||||||||||| |||| |||| ||| |||| |||||||| | | ||| |  |  ||||| ||||| ||||||||||||  ||||    
T  25951528 ggagacaagcggttgtctacatggaaggagtgttgatcgtgagattagtttcttttccacttatttccgatgtataaataatagttttccataggtaaaa 25951429  T
Q  335 cgggtcgcaaatcacctatacaaaattctaaaacattcaaagtaccggagcgagagaaaagagtcataaagaatgtatgtaaaggatttgtcgaaccacc 434  Q
    | ||||| ||||| | |||||| |||||||||||| ||||||||||| |  |||||||||||||||||||||||||||||||| ||||||||||||||      
T  25951428 caggtcgtaaatcgcttatacataattctaaaacactcaaagtaccg-acagagagaaaagagtcataaagaatgtatgtaaaagatttgtcgaaccaat 25951330  T
Q  435 tttatttttaatgca 449  Q
    |||| | ||||||||    
T  25951329 tttactcttaatgca 25951315  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 73; E-Value: 4e-33
Query Start/End: Original strand, 85 - 205
Target Start/End: Complemental strand, 25951783 - 25951664
Alignment:
Q  85 ttgttagctggtattttcaccagcctcatttaatgtggtcaacattggttgatttttactcttgcaggaattgaagtcttttcttcaatcaaaggagttt 184  Q
    |||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||| ||||  |||||||||||  ||||||||||| ||    
T  25951783 ttgttagctggtattttcaccagcctcatttaatgtggtcaacattagttgacttttactcttgcacgaatcaaagtcttttctctaatcaaaggag-tt 25951685  T
Q  185 caaagagatgttggacttagc 205  Q
    ||| || |||||||| |||||    
T  25951684 caacgaaatgttggatttagc 25951664  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 86 - 205
Target Start/End: Original strand, 20058300 - 20058418
Alignment:
Q  86 tgttagctggtattttcaccagcctcatttaatgtggtcaacattggttgatttttactcttgcaggaattgaagtcttttcttcaatcaaaggagtttc 185  Q
    ||||||||| ||||||||||||||||||||||||||||||  ||| ||||| |||||||||||||||||| ||||||||||||||||||||| ||| |||    
T  20058300 tgttagctgatattttcaccagcctcatttaatgtggtcagtattagttgacttttactcttgcaggaatcgaagtcttttcttcaatcaaaagag-ttc 20058398  T
Q  186 aaagagatgttggacttagc 205  Q
     | |||||||||||| ||||    
T  20058399 gacgagatgttggacctagc 20058418  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 85 - 183
Target Start/End: Complemental strand, 21165655 - 21165557
Alignment:
Q  85 ttgttagctggtattttcaccagcctcatttaatgtggtcaacattggttgatttttactcttgcaggaattgaagtcttttcttcaatcaaaggagtt 183  Q
    ||||||||| ||||||| |||||||||| ||||||||||||||||| ||||| |||||||||||||||||  ||||||||| |||||||||||||||||    
T  21165655 ttgttagctagtatttttaccagcctcacttaatgtggtcaacattagttgacttttactcttgcaggaagcgaagtctttccttcaatcaaaggagtt 21165557  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 63; E-Value: 4e-27
Query Start/End: Original strand, 83 - 205
Target Start/End: Original strand, 23209772 - 23209893
Alignment:
Q  83 atttgttagctggtattttcaccagcctcatttaatgtggtcaacattggttgatttttactcttgcaggaattgaagtcttttcttcaatcaaaggagt 182  Q
    |||| ||||||| ||||| ||||||||||| ||||||||||||||| | ||||| |||||||||||||||||| ||||| |||||||||| ||||||||     
T  23209772 atttattagctgttatttgcaccagcctcaattaatgtggtcaacaatagttgacttttactcttgcaggaatcgaagtattttcttcaaacaaaggag- 23209870  T
Q  183 ttcaaagagatgttggacttagc 205  Q
    ||| | ||||||||||| |||||    
T  23209871 ttcgacgagatgttggatttagc 23209893  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 318 - 418
Target Start/End: Original strand, 23379373 - 23379474
Alignment:
Q  318 agttttccataga-aaaacgggtcgcaaatcacctatacaaaattctaaaacattcaaagtaccggagcgagagaaaagagtcataaagaatgtatgtaa 416  Q
    ||||||||||||  ||||||||||||||||||||||| || |||||||||||| || ||||||  | |||||||||||||||||||||||||||||||||    
T  23379373 agttttccatagggaaaacgggtcgcaaatcacctatgcagaattctaaaacactcgaagtactagcgcgagagaaaagagtcataaagaatgtatgtaa 23379472  T
Q  417 ag 418  Q
    ||    
T  23379473 ag 23379474  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 331 - 490
Target Start/End: Original strand, 17167275 - 17167433
Alignment:
Q  331 aaaacgggtcgcaaatcacctatacaaaattctaaaacattcaaagtaccggagcgagagaaaagagtcataaagaatgtatgtaaaggatttgtcgaac 430  Q
    |||||||||| |||||||| |||| ||| ||||| ||||    ||||||| | ||||||||||||||| ||| | |||||||||||||||||||||||||    
T  17167275 aaaacgggtcccaaatcacttatagaaa-ttctacaacaccagaagtaccagcgcgagagaaaagagtaatacaaaatgtatgtaaaggatttgtcgaac 17167373  T
Q  431 cacctttatttttaatgcattgtattttacctttcctttacgtttctgcaatttaaactt 490  Q
    ||||||||||||||||| | || | |||| |||| ||||| |||||| || ||| |||||    
T  17167374 cacctttatttttaatgtaatgcaatttatcttttctttaagtttctacacttttaactt 17167433  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 384 - 490
Target Start/End: Original strand, 19924022 - 19924128
Alignment:
Q  384 gcgagagaaaagagtcataaagaatgtatgtaaaggatttgtcgaaccacctttatttttaatgcattgtattttacctttcctttacgtttctgcaatt 483  Q
    ||||||||||||||| ||| ||||||||| |||| ||||||||||||||||||||||||||||||| |||| |||| |||| ||||| |||| |||| ||    
T  19924022 gcgagagaaaagagttatacagaatgtatataaaagatttgtcgaaccacctttatttttaatgcaatgtaatttatcttttctttaagtttatgcactt 19924121  T
Q  484 taaactt 490  Q
    | |||||    
T  19924122 ttaactt 19924128  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 342 - 538
Target Start/End: Complemental strand, 23355777 - 23355581
Alignment:
Q  342 caaatcacctatacaaaattctaaaacattcaaagtaccggagcgagagaaaagagtcataaagaatgtatgtaaaggatttgtcgaaccacctttattt 441  Q
    ||||| ||||||||| ||||||| |||| |  ||||||||| |  || ||||| ||||||| | ||| |||||||| ||||| ||  |||||||||| ||    
T  23355777 caaattacctatacagaattctagaacacttgaagtaccggcgttagggaaaatagtcatacaaaatatatgtaaatgatttttcagaccacctttactt 23355678  T
Q  442 ttaatgcattgtattttacctttcctttacgtttctgcaatttaaacttaatgccttaactttgcttttaaaaccttttttctgtcgaaagacgcca 538  Q
    |||||||| || | |||| |||| ||||| ||||||||||||| ||||| || |||| ||||||| |||||||| ||||| |  ||||| |||||||    
T  23355677 ttaatgcaatgcaatttatcttttctttatgtttctgcaattttaactttattcctttactttgcatttaaaacgtttttcccatcgaatgacgcca 23355581  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 54; E-Value: 9e-22
Query Start/End: Original strand, 357 - 490
Target Start/End: Complemental strand, 24878489 - 24878356
Alignment:
Q  357 aaattctaaaacattcaaagtaccggagcgagagaaaagagtcataaagaatgtatgtaaaggatttgtcgaaccacctttatttttaatgcattgtatt 456  Q
    |||||||| |||| || || |||||  ||||||||||||||| |||   ||| ||||||||||||||||| |||||||||||||||||||||| || | |    
T  24878489 aaattctacaacactcgaattaccgacgcgagagaaaagagttatacgtaatttatgtaaaggatttgtcaaaccacctttatttttaatgcaatgcaat 24878390  T
Q  457 ttacctttcctttacgtttctgcaatttaaactt 490  Q
    ||| |||| ||||| ||||||||  |||||||||    
T  24878389 ttatcttttctttaagtttctgcgttttaaactt 24878356  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 86 - 205
Target Start/End: Complemental strand, 20061323 - 20061207
Alignment:
Q  86 tgttagctggtattttcaccagcctcatttaatgtggtcaacattggttgatttttactcttgcaggaattgaagtcttttcttcaatcaaaggagtttc 185  Q
    |||| |||||||||| |||||||||| |||||| |||||| |||| ||||| |||||||||||||||||| ||||| ||||||||||| ||||| | |||    
T  20061323 tgtttgctggtattt-caccagcctcgtttaatatggtcaccattagttgacttttactcttgcaggaatcgaagt-ttttcttcaatgaaaggtg-ttc 20061227  T
Q  186 aaagagatgttggacttagc 205  Q
     | |||||||||||||||||    
T  20061226 gacgagatgttggacttagc 20061207  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 384 - 490
Target Start/End: Original strand, 19926749 - 19926855
Alignment:
Q  384 gcgagagaaaagagtcataaagaatgtatgtaaaggatttgtcgaaccacctttatttttaatgcattgtattttacctttcctttacgtttctgcaatt 483  Q
    ||||||||||| ||| ||| ||||||||  |||| ||||||||||||||||||||||||||||||| || | |||| |||| ||||| |||| |||| ||    
T  19926749 gcgagagaaaatagttatacagaatgtaaataaaagatttgtcgaaccacctttatttttaatgcaatgcaatttatcttttctttaagtttatgcactt 19926848  T
Q  484 taaactt 490  Q
    | |||||    
T  19926849 ttaactt 19926855  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 336 - 469
Target Start/End: Complemental strand, 17987619 - 17987487
Alignment:
Q  336 gggtcgcaaatcacctatacaaaattctaaaacattcaaagtaccggag-cgagagaaaagagtcataaagaatgtatgtaaag-gatttgtcgaaccac 433  Q
    |||||||||||||  |||||| |||||||||||| ||||| |||||  | | || |||| |||| ||| |||||||||||| |  ||||||| || ||||    
T  17987619 gggtcgcaaatca--tatacagaattctaaaacactcaaactaccgacgtctagggaaacgagttatacagaatgtatgtagactgatttgtaga-ccac 17987523  T
Q  434 ctttatttttaatgcattgtattttacctttccttt 469  Q
    |||||||||||||||| || ||||||||||||||||    
T  17987522 ctttatttttaatgcaatgcattttacctttccttt 17987487  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 86 - 130
Target Start/End: Original strand, 19217727 - 19217771
Alignment:
Q  86 tgttagctggtattttcaccagcctcatttaatgtggtcaacatt 130  Q
    |||||||||||| ||||||||||||||||||||||||||||||||    
T  19217727 tgttagctggtaatttcaccagcctcatttaatgtggtcaacatt 19217771  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 132 - 205
Target Start/End: Complemental strand, 20713647 - 20713575
Alignment:
Q  132 gttgatttttactcttgcaggaattgaagtcttttcttcaatcaaaggagtttcaaagagatgttggacttagc 205  Q
    ||||| ||||| ||||||||||||  |||||||||||||||||||||||| ||| | ||||| |||||||||||    
T  20713647 gttgacttttattcttgcaggaatcaaagtcttttcttcaatcaaaggag-ttcgacgagatattggacttagc 20713575  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #23
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 59 - 167
Target Start/End: Complemental strand, 24878889 - 24878782
Alignment:
Q  59 gaaaatggcatttcttggggggcaatttgttagctggtattttcaccagcctcatttaatgtggtcaacattggttgatttttactcttgcaggaattga 158  Q
    ||||||| ||||| ||||||| ||||||||||||  ||| ||||| ||| |||||||||||  ||||||||| ||||| |||||   ||||| |||| ||    
T  24878889 gaaaatgacattt-ttgggggtcaatttgttagcctgtaatttcaacaggctcatttaatgcagtcaacattagttgacttttatctttgcaagaatcga 24878791  T
Q  159 agtcttttc 167  Q
    |||||||||    
T  24878790 agtcttttc 24878782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #24
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 55 - 130
Target Start/End: Complemental strand, 17987988 - 17987914
Alignment:
Q  55 cgtcgaaaatggcatttcttggggggcaatttgttagctggtattttcaccagcctcatttaatgtggtcaacatt 130  Q
    |||||||||||| |||| |||||||||| |||||||||| ||| ||||  ||| |||||||||| |||||||||||    
T  17987988 cgtcgaaaatgggattt-ttggggggcattttgttagcttgtaatttcgacaggctcatttaatatggtcaacatt 17987914  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #25
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 55 - 165
Target Start/End: Complemental strand, 22011588 - 22011479
Alignment:
Q  55 cgtcgaaaatggcatttcttggggggcaatttgttagctggtattttcaccagcctcatttaatgtggtcaaca-ttggttga-tttttactcttgcagg 152  Q
    ||||||||||||||||| |  ||||||| ||||||||   ||| ||||| |||  ||||||||||||||||||| |||||||| |||||||| |||||||    
T  22011588 cgtcgaaaatggcattttt--gggggcagtttgttagtctgtaatttcaacagattcatttaatgtggtcaacatttggttgactttttact-ttgcagg 22011492  T
Q  153 aattgaagtcttt 165  Q
    ||| |||| ||||    
T  22011491 aatcgaaggcttt 22011479  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #26
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 248 - 365
Target Start/End: Complemental strand, 21165399 - 21165282
Alignment:
Q  248 ttgtctacatggaagtagtgctgattgtgggattcgtttctttccaaattagtatctt-tgtattaataagagttttccataga-aaaacgggtcgcaaa 345  Q
    |||||||||||| ||  |||||||| ||| |||| |||||||||||  ||| | |||| ||||| ||||| ||||||||||||  |||||||||||||||    
T  21165399 ttgtctacatgggaggcgtgctgatcgtgcgattagtttctttccac-ttatt-tcttatgtataaataatagttttccatagggaaaacgggtcgcaaa 21165302  T
Q  346 tcacctatacaaaattctaa 365  Q
    || |||||| | ||||||||    
T  21165301 tcgcctatatagaattctaa 21165282  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #27
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 507 - 538
Target Start/End: Complemental strand, 24878319 - 24878288
Alignment:
Q  507 ttttaaaaccttttttctgtcgaaagacgcca 538  Q
    ||||||||||||||||||||||||||||||||    
T  24878319 ttttaaaaccttttttctgtcgaaagacgcca 24878288  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #28
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 389 - 438
Target Start/End: Original strand, 31533052 - 31533102
Alignment:
Q  389 agaaaagagtcataaagaatgtatgtaa-aggatttgtcgaaccaccttta 438  Q
    |||||||||||||| |||||||||||||   ||||||||||||||||||||    
T  31533052 agaaaagagtcatagagaatgtatgtaatctgatttgtcgaaccaccttta 31533102  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #29
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 462 - 494
Target Start/End: Complemental strand, 25951292 - 25951260
Alignment:
Q  462 tttcctttacgtttctgcaatttaaacttaatg 494  Q
    ||||||||| |||||||||||||||||||||||    
T  25951292 tttcctttaagtttctgcaatttaaacttaatg 25951260  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 149; Significance: 2e-78; HSPs: 26)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 149; E-Value: 2e-78
Query Start/End: Original strand, 234 - 540
Target Start/End: Complemental strand, 15687166 - 15686859
Alignment:
Q  234 tgggagacaagcgtttgtctacatggaagtagtgctgattgtgggattcgtttctttccaaattagtatctttgtattaataagagttttccatagaa-a 332  Q
    ||||||||||||| ||| |||||| |||| |||| |||| |||||||| |||||||||||  ||| | ||| ||||| ||||||||||||||||||   |    
T  15687166 tgggagacaagcggttgcctacatagaaggagtgatgatcgtgggattagtttctttccag-ttattttctatgtataaataagagttttccatagtgga 15687068  T
Q  333 aacgggtcgcaaatcacctatacaaaattctaaaac-attcaaagtaccggagcgagagaaaagagtcataaagaatgtatgtaaaggatttgtcgaacc 431  Q
    |||| ||||||||||||||||||  ||||||||||  | || ||||||||  |||||||||||||||| ||||||||||||| || |||||| | | |||    
T  15687067 aacgagtcgcaaatcacctatactgaattctaaaaatactcgaagtaccgacgcgagagaaaagagtcttaaagaatgtatgaaatggatttttaggacc 15686968  T
Q  432 acctttatttttaatgcattgtattttacctttcctttacgtttctgcaatttaaacttaatgccttaactttgcttttaaaaccttttttctgtcgaaa 531  Q
    ||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||| ||||||||||||||||| ||||||| ||||||    
T  15686967 acctttatttttaatgcattgtattttacctttgctttaagtttctgcaatttaaacttaatgcctttactttgcttttaaaaccctttttctatcgaaa 15686868  T
Q  532 gacgccaca 540  Q
     ||||||||    
T  15686867 cacgccaca 15686859  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 146; E-Value: 1e-76
Query Start/End: Original strand, 306 - 533
Target Start/End: Original strand, 24699049 - 24699275
Alignment:
Q  306 tgtattaataagagttttccataga-aaaacgggtcgcaaatcacctatacaaaattctaaaacattcaaagtaccggagcgagagaaaagagtcataaa 404  Q
    ||||| ||||| ||||||||||||  ||||||||||||||||| |||||||| |||||||||||| || ||||||||| ||||||||||||| |||  ||    
T  24699049 tgtataaataatagttttccatagggaaaacgggtcgcaaatcccctatacagaattctaaaacactcgaagtaccggcgcgagagaaaagaatca--aa 24699146  T
Q  405 gaatgtatgtaaaggatttgtcgaaccacctttatttttaatgcattgtattttacctttcctttacgtttctgcaatttaaacttaatgccttaacttt 504  Q
    |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |||||||||||||||||||||| |||||    
T  24699147 gaatgtatttaaaggatttgtcgaaccacctttatttttaatgcattgtattttacctttcctttaagtttatgcaatttaaacttaatgcctttacttt 24699246  T
Q  505 gcttttaaaaccttttttctgtcgaaaga 533  Q
    |||| | ||||| ||||||||||||||||    
T  24699247 gcttatgaaaccctttttctgtcgaaaga 24699275  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 127; E-Value: 3e-65
Query Start/End: Original strand, 318 - 534
Target Start/End: Complemental strand, 26011055 - 26010836
Alignment:
Q  318 agttttccataga-aaaacgggtcgcaaatcacctatacaaaattctaaaacattcaaagtaccggagcgagagaaaagagtcataaagaatgtatgtaa 416  Q
    ||||||||||||  ||||| |||||||||||||||||||  |||||||||||| || ||||||||| ||||||||| |||||||||||||||||||||||    
T  26011055 agttttccatagggaaaacaggtcgcaaatcacctataccgaattctaaaacactcgaagtaccggcgcgagagaatagagtcataaagaatgtatgtaa 26010956  T
Q  417 aggatttgtcgaaccacctttatttttaatgcattgtattttacctttcctttacgtttctgcaa---tttaaacttaatgccttaactttgcttttaaa 513  Q
    | ||||||||||||||||||||||||||| ||||||||||||| |||||||||| ||||||||||    |||||||||||||||| ||||||||||||||    
T  26010955 atgatttgtcgaaccacctttatttttaaagcattgtattttatctttcctttaagtttctgcaagttattaaacttaatgcctttactttgcttttaaa 26010856  T
Q  514 accttttttctgtcgaaagac 534  Q
    | |  ||||||||||||||||    
T  26010855 aac-cttttctgtcgaaagac 26010836  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 109; E-Value: 1e-54
Query Start/End: Original strand, 338 - 521
Target Start/End: Original strand, 13428733 - 13428914
Alignment:
Q  338 gtcgcaaatcacctatacaaaattctaaaacattcaaagtaccggagcgagagaaaagagtcataaagaatgtatgtaaaggatttgtcgaaccaccttt 437  Q
    ||||||||||||||||| ||  |||||||||| || ||||||||  | ||||||||||||| |||||||||||||||||||||||||| ||||||| |||    
T  13428733 gtcgcaaatcacctatataa--ttctaaaacactcgaagtaccgacgtgagagaaaagagtaataaagaatgtatgtaaaggatttgttgaaccacattt 13428830  T
Q  438 atttttaatgcattgtattttacctttcctttacgtttctgcaatttaaacttaatgccttaactttgcttttaaaaccttttt 521  Q
    ||| |||||||||||||||||| ||||||||||  ||||||||||||||||||||||| || ||||||||||||||||| ||||    
T  13428831 attattaatgcattgtattttatctttcctttaaatttctgcaatttaaacttaatgcatttactttgcttttaaaaccctttt 13428914  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 100; E-Value: 3e-49
Query Start/End: Original strand, 233 - 538
Target Start/End: Original strand, 4765605 - 4765916
Alignment:
Q  233 atgggagacaagcgtttgtctacatggaagtagtgctgattgtgggattcgtttctttccaaattagtatctttgtattaataagagttttccatag-aa 331  Q
    |||||||||||||  ||||||||||||||| ||||  ||| |||||||| ||   | | | | ||| | ||| ||||| ||||  |||||||||||| ||    
T  4765605 atgggagacaagcagttgtctacatggaagaagtgtagatcgtgggatt-gtacttgttctagttattttctatgtataaatagtagttttccataggaa 4765703  T
Q  332 aaacgggtcgcaaatcacctatacaaaattctaaaacattcaaagtaccggagcgagagaaaagagtcataaagaat----gtatgtaaaggatttgtcg 427  Q
    ||| ||||||||||||||||||| |  ||||||||||| |  | ||||  | |||||||||||||||||||||||||    ||||||||| |||||||||    
T  4765704 aaatgggtcgcaaatcacctatatagtattctaaaacacttgatgtactagcgcgagagaaaagagtcataaagaattaatgtatgtaaatgatttgtcg 4765803  T
Q  428 aaccacctttatttttaatgcattgtattttacctttcctttacgtttctgcaa-tttaaacttaatgccttaactttgctttt-aaaaccttttttctg 525  Q
    ||||||||||| ||||||||||||||| ||||  ||||||||| |||| ||||| ||||||||||||||||| ||||||||||| |||||| ||||  ||    
T  4765804 aaccacctttacttttaatgcattgtactttatttttcctttaagtttatgcaattttaaacttaatgcctttactttgcttttaaaaacccttttcatg 4765903  T
Q  526 tcgaaagacgcca 538  Q
    |||||||||||||    
T  4765904 tcgaaagacgcca 4765916  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 100; E-Value: 3e-49
Query Start/End: Original strand, 318 - 513
Target Start/End: Complemental strand, 4769937 - 4769742
Alignment:
Q  318 agttttccatagaaaaacgggtcgcaaatcacctatacaaaattctaaaacattcaaagtaccggagcgagagaaaagagtcataaagaatgtatgtaaa 417  Q
    ||||||||||||  ||| | ||| ||||||| ||||||| |||||||||||| || || |||| | || ||||||||||||||||||||||||||||||     
T  4769937 agttttccatagggaaaagcgtcccaaatcatctatacataattctaaaacactcgaaataccagcgcaagagaaaagagtcataaagaatgtatgtaac 4769838  T
Q  418 ggatttgtcgaaccacctttatttttaatgcattgtattttacctttcctttacgtttctgcaatttaaacttaatgccttaactttgcttttaaa 513  Q
    | |||| ||||||||||||||||| |||||||||||||||   |||||||||| |||| || ||||||||||||||||||| ||||||||||||||    
T  4769837 gaatttttcgaaccacctttatttctaatgcattgtatttattctttcctttaagtttatgaaatttaaacttaatgcctttactttgcttttaaa 4769742  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 97; E-Value: 2e-47
Query Start/End: Original strand, 234 - 449
Target Start/End: Complemental strand, 7149005 - 7148790
Alignment:
Q  234 tgggagacaagcgtttgtctacatggaagtagtgctgattgtgggattcgtttctttccaaattagtatctttgtattaataagagttttccatagaaaa 333  Q
    ||||||||||| | ||||||||||||||| |||| |||| |||||||| |||||||||||| ||| |  || ||||| ||||  |||||||||||| |||    
T  7149005 tgggagacaagtggttgtctacatggaaggagtgttgatcgtgggattagtttctttccaa-ttatttcctatgtataaatagtagttttccataggaaa 7148907  T
Q  334 ac-gggtcgcaaatcacctatacaaaattctaaaacattcaaagtaccggagcgagagaaaagagtcataaagaatgtatgtaaaggatttgtcgaacca 432  Q
    || ||||| |||||  |||||||| |||||||||| | |  ||||||||  |||||||||||||||||||||||||||||||||||||||||||||||||    
T  7148906 accgggtcacaaattgcctatacagaattctaaaatagttgaagtaccgacgcgagagaaaagagtcataaagaatgtatgtaaaggatttgtcgaacca 7148807  T
Q  433 cctttatttttaatgca 449  Q
    | |||| ||||||||||    
T  7148806 cttttacttttaatgca 7148790  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 96; E-Value: 8e-47
Query Start/End: Original strand, 22 - 166
Target Start/End: Original strand, 9033080 - 9033225
Alignment:
Q  22 caaaaatgtcaattctctccgttgattatattccgtcgaaaatggcatttcttggggggc--aatttgttagctggtattttcaccagcctcatttaatg 119  Q
    |||||||| |||||| |||| |||||||||||| |||||||||||||||| ||||||| |  |||||||||||||||||||||||||||||||||||||     
T  9033080 caaaaatgccaattccctcctttgattatattcagtcgaaaatggcattt-ttgggggtcccaatttgttagctggtattttcaccagcctcatttaata 9033178  T
Q  120 tggtcaacattggttgatttttactcttgcaggaattgaagtctttt 166  Q
    ||||||||||| ||||| |||||||||||||||||||||||||||||    
T  9033179 tggtcaacattagttgacttttactcttgcaggaattgaagtctttt 9033225  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 89; E-Value: 1e-42
Query Start/End: Original strand, 318 - 540
Target Start/End: Original strand, 4832516 - 4832740
Alignment:
Q  318 agttttccataga-aaaacgggtcgcaaatcacctatacaaaattctaaaacattcaaagtaccggagcgagagaaaagagtcataaagaatgtatgtaa 416  Q
    ||||||||||||  |||| || |||||||||||||||||| |||||||||||| || ||| |  || | ||||||||||||||| ||||||| ||| |||    
T  4832516 agttttccatagggaaaatggatcgcaaatcacctatacagaattctaaaacactcgaagcattggtgtgagagaaaagagtcacaaagaatatatttaa 4832615  T
Q  417 aggatttgtcgaaccacctttatttttaatgcattgtattttacctttcctttacgtttctgcaatttaaacttaatgccttaactttgcttttaaaa-c 515  Q
    ||||| ||  | ||||||||||| |||||||||||||||||||  ||||||||  |||| |||||||||||||||||| ||| || ||||||| |||| |    
T  4832616 aggatctgctggaccacctttatatttaatgcattgtattttaattttcctttgagtttatgcaatttaaacttaatgtctttaccttgctttaaaaacc 4832715  T
Q  516 cttttttctgtcgaaagacgccaca 540  Q
    ||||||||| |||||||||| ||||    
T  4832716 cttttttctttcgaaagacgtcaca 4832740  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 83; E-Value: 5e-39
Query Start/End: Original strand, 234 - 457
Target Start/End: Original strand, 9033398 - 9033622
Alignment:
Q  234 tgggagacaagcgtttgtctacatggaagtagtgctgattgtgggattcgtttctttccaaattagtatctt-tgtattaataagagttttccatagaaa 332  Q
    ||||| ||||||| ||||||||||||| | |||| |||| ||| |||| |||||||||||  ||| | |||| ||||| ||||| |||||||||||| ||    
T  9033398 tgggatacaagcggttgtctacatggagggagtgttgatcgtgtgattagtttctttccac-ttatt-tcttatgtataaataatagttttccataggaa 9033495  T
Q  333 aacgggtcgcaaatcacctatacaaaattct-aaaacattcaaagtaccggagcgagagaaaagagtcataaagaatgtatgtaaaggatttgtcgaacc 431  Q
    ||||||||||| ||| |||||||| |||| | |||||| || ||||| ||| || ||||||||  |||| ||||||||||||||||||||||||| ||||    
T  9033496 aacgggtcgcatatcgcctatacagaattttcaaaacactcgaagtatcggcgcaagagaaaatggtcacaaagaatgtatgtaaaggatttgtcaaacc 9033595  T
Q  432 acctttatttttaatgca-ttgtattt 457  Q
    |||||||||||||||||| ||||||||    
T  9033596 acctttatttttaatgcacttgtattt 9033622  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 83; E-Value: 5e-39
Query Start/End: Original strand, 234 - 446
Target Start/End: Original strand, 29614512 - 29614724
Alignment:
Q  234 tgggagacaagcgtttgtctacatggaagtagtgctgattgtgggattcgtttctttccaaattagtatctttgtattaataagagttttccataga-aa 332  Q
    |||| |||||||  ||||||||||||||| |||||||||||||||||| |||||||| ||  ||| |  || ||||| || || ||||||||||||  ||    
T  29614512 tgggcgacaagcagttgtctacatggaaggagtgctgattgtgggattagtttcttttcat-ttatttcctatgtataaa-aatagttttccatagggaa 29614609  T
Q  333 aacgggtcgcaaatcacctatacaaaattctaa-aacattcaaagtaccggagcgagagaaaagagtcataaagaatgtatgtaaaggatttgtcgaacc 431  Q
    || |||||||||||| |||||| | |||||||| |||| || ||||||||   | |||||||||||||||||| ||||||||||||||||||||||||||    
T  29614610 aatgggtcgcaaatcgcctatatataattctaagaacactcgaagtaccgacacaagagaaaagagtcataaataatgtatgtaaaggatttgtcgaacc 29614709  T
Q  432 acctttatttttaat 446  Q
    |||||||||||||||    
T  29614710 acctttatttttaat 29614724  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 77; E-Value: 2e-35
Query Start/End: Original strand, 56 - 207
Target Start/End: Original strand, 4765324 - 4765475
Alignment:
Q  56 gtcgaaaatggcatttcttggggggcaatttgttagctggtattttcaccagcctcatttaatgtggtcaacattggttgatttttactcttgcaggaat 155  Q
    |||||||||||||||| |||||| | |||||||||| ||| ||||||||||||||||||||||||| |||||||| ||||| ||||||||||||||||||    
T  4765324 gtcgaaaatggcattt-ttggggtgtaatttgttagttggaattttcaccagcctcatttaatgtgatcaacattagttgacttttactcttgcaggaat 4765422  T
Q  156 tgaagtctttt-cttcaatcaaaggagtttcaaagagatgttggacttagcat 207  Q
     ||||| |||| ||||||   |||||||||| | || ||||||||||||||||    
T  4765423 cgaagttttttccttcaacttaaggagtttcgacgaaatgttggacttagcat 4765475  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 76; E-Value: 7e-35
Query Start/End: Original strand, 342 - 484
Target Start/End: Complemental strand, 23378631 - 23378488
Alignment:
Q  342 caaatcacctatacaaaattctaaaacattcaaagtaccggagcgagagaaaagagtcataaagaatgtatgtaaaggatttg-tcgaaccacctttatt 440  Q
    |||||||| ||||||||||||||||| | || ||||| ||| ||||||||||||||||||| | ||||||||||||||||||| | ||||||||||||||    
T  23378631 caaatcacttatacaaaattctaaaatactcgaagtatcggcgcgagagaaaagagtcatacataatgtatgtaaaggatttgtttgaaccacctttatt 23378532  T
Q  441 tttaatgcattgtattttacctttcctttacgtttctgcaattt 484  Q
    ||||||||| || | |||| |||||||||| |||||| ||||||    
T  23378531 tttaatgcaatgcaatttatctttcctttaagtttctacaattt 23378488  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 65; E-Value: 3e-28
Query Start/End: Original strand, 318 - 449
Target Start/End: Original strand, 16242937 - 16243069
Alignment:
Q  318 agttttccataga-aaaacgggtcgcaaatcacctatacaaaattctaaaacattcaaagtaccggagcgagagaaaagagtcataaagaatgtatgtaa 416  Q
    ||||||||||||  |||||| |||| ||||  ||| ||||  ||||||||||| || |||||||   |||||||||||||||||||||||||||||||||    
T  16242937 agttttccatagggaaaacgagtcgtaaatttcctctacaggattctaaaacactcgaagtaccaacgcgagagaaaagagtcataaagaatgtatgtaa 16243036  T
Q  417 aggatttgtcgaaccacctttatttttaatgca 449  Q
    || |||||||||||||| |||||||||||||||    
T  16243037 agcatttgtcgaaccacttttatttttaatgca 16243069  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 87 - 205
Target Start/End: Original strand, 24698727 - 24698845
Alignment:
Q  87 gttagctggtattttcaccagcctcatttaatgtggtcaacattggttgatttttactcttgcaggaattgaagtcttttcttcaatcaaaggagtttca 186  Q
    |||||||| || |||||||| ||||||||||| | ||||||||| ||||| ||||||| ||| |||||||||||||||||||||||   ||||||||||     
T  24698727 gttagctgataatttcaccaacctcatttaatttagtcaacattagttgacttttactattggaggaattgaagtcttttcttcaacataaggagtttcg 24698826  T
Q  187 aagagatgttggacttagc 205  Q
    | |||||||| ||||||||    
T  24698827 acgagatgttagacttagc 24698845  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 56; E-Value: 6e-23
Query Start/End: Original strand, 23 - 202
Target Start/End: Complemental strand, 4770274 - 4770096
Alignment:
Q  23 aaaaatgtcaattctctccgttgattatattccgtcgaaaatggcatttcttggggggcaatttgttagctggtattttcaccagcctcatttaatgtgg 122  Q
    ||||||| ||||||||||| | || || |||| |||||||||||||||||  |||||| || ||||||||||||| ||| | ||| ||| ||||||||||    
T  4770274 aaaaatgccaattctctccttcgaatagattcagtcgaaaatggcatttca-ggggggtaaattgttagctggtaattttaacagactcgtttaatgtgg 4770176  T
Q  123 tcaacattggttgatttttactcttgcaggaattgaagtcttttcttcaatcaaaggagtttcaaagagatgttggactt 202  Q
     ||||||| ||| | |||||  ||||||||||| | ||||||||||||||   ||||| |||  | ||||||||||||||    
T  4770175 ccaacattcgtttacttttatccttgcaggaatcgtagtcttttcttcaacataaggaattttgacgagatgttggactt 4770096  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 86 - 166
Target Start/End: Complemental strand, 15687420 - 15687340
Alignment:
Q  86 tgttagctggtattttcaccagcctcatttaatgtggtcaacattggttgatttttactcttgcaggaattgaagtctttt 166  Q
    ||||||||||||  ||||||||||||||||||||||||||||||| ||||| ||||||||||| ||||||  |||||||||    
T  15687420 tgttagctggtaagttcaccagcctcatttaatgtggtcaacattagttgacttttactcttgtaggaatcaaagtctttt 15687340  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 88 - 181
Target Start/End: Original strand, 16242605 - 16242699
Alignment:
Q  88 ttagctggtattttcaccagcctcatttaatgtggtcaacattggtt-gatttttactcttgcaggaattgaagtcttttcttcaatcaaaggag 181  Q
    |||||||||||||||| || ||||||||||||||||||||||| ||| || | ||||| |||||||||  ||||||||||| |||||||||||||    
T  16242605 ttagctggtattttcatcaacctcatttaatgtggtcaacattagttagactgttacttttgcaggaagcgaagtcttttcctcaatcaaaggag 16242699  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 86 - 204
Target Start/End: Original strand, 29614037 - 29614155
Alignment:
Q  86 tgttagctggtattttcaccagcctcatttaatgtggtcaacattggttgatttttactcttgcaggaattgaag-tcttttcttcaatcaaaggagttt 184  Q
    ||||||||| ||||||||| ||||||||||||||||||||| ||| ||||| ||||||||||||| ||||  ||| | |||||||||| | |||||| ||    
T  29614037 tgttagctgctattttcactagcctcatttaatgtggtcaatattagttgacttttactcttgcatgaatcaaagtttttttcttcaaacgaaggag-tt 29614135  T
Q  185 caaagagatgttggacttag 204  Q
    | | ||||||| ||||||||    
T  29614136 cgacgagatgtaggacttag 29614155  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 357 - 480
Target Start/End: Original strand, 27304424 - 27304547
Alignment:
Q  357 aaattctaaaacattcaaagtaccggagcgagagaaaagagtcataaagaatgtatgtaaaggatttgtcgaaccacctttatttttaatgcattgtatt 456  Q
    |||||||| |||| |||||||| |||  |||||||||||| | ||| | |||||||||| || ||||||| |||||| ||||||||||||||| || | |    
T  27304424 aaattctacaacactcaaagtatcggctcgagagaaaagaattatacaaaatgtatgtatagaatttgtcaaaccacttttatttttaatgcaatgcaat 27304523  T
Q  457 ttacctttcctttacgtttctgca 480  Q
    |||  ||| ||||| |||||||||    
T  27304524 ttatattttctttaagtttctgca 27304547  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 99 - 207
Target Start/End: Original strand, 4832190 - 4832300
Alignment:
Q  99 tttcaccagcctcatttaatgtggtcaacattggttgatttttactctt-gcaggaattgaagtctttt-cttcaatcaaaggagtttcaaagagatgtt 196  Q
    |||||||||||||||||||| ||||||||||| ||||| ||||  |||| |||||||| |||||||||| ||| ||    ||||||||  | ||||||||    
T  4832190 tttcaccagcctcatttaatatggtcaacattagttgactttttatctttgcaggaatcgaagtctttttcttgaacttgaggagttttgacgagatgtt 4832289  T
Q  197 ggacttagcat 207  Q
    |||||||||||    
T  4832290 ggacttagcat 4832300  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 406 - 480
Target Start/End: Original strand, 8737234 - 8737308
Alignment:
Q  406 aatgtatgtaaaggatttgtcgaaccacctttatttttaatgcattgtattttacctttcctttacgtttctgca 480  Q
    |||| ||||||||||||||| |||||||||||||||| |||||| || | |||| |||| |||||  ||||||||    
T  8737234 aatgcatgtaaaggatttgttgaaccacctttattttaaatgcaatgcaatttagcttttctttaactttctgca 8737308  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 406 - 480
Target Start/End: Original strand, 9089472 - 9089546
Alignment:
Q  406 aatgtatgtaaaggatttgtcgaaccacctttatttttaatgcattgtattttacctttcctttacgtttctgca 480  Q
    |||| ||||||||||||||| |||||||||||||||| |||||| || | |||| |||| |||||  ||||||||    
T  9089472 aatgcatgtaaaggatttgttgaaccacctttattttaaatgcaatgcaatttagcttttctttaactttctgca 9089546  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 429 - 475
Target Start/End: Complemental strand, 13409879 - 13409833
Alignment:
Q  429 accacctttatttttaatgcattgtattttacctttcctttacgttt 475  Q
    ||||||||||||||||||||| || ||||||||||||||||| ||||    
T  13409879 accacctttatttttaatgcaatgcattttacctttcctttaagttt 13409833  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 86 - 169
Target Start/End: Original strand, 13428406 - 13428488
Alignment:
Q  86 tgttagctggtattttcaccagcctcatttaatgtggtcaacattggttgatttttactcttgcaggaattgaagtcttttctt 169  Q
    |||||||||||| ||||||||||||| ||||||| |||| ||||| ||||| |||  || ||||| |||| ||||| |||||||    
T  13428406 tgttagctggtaatttcaccagcctcgtttaatgcggtcgacattagttgactttatct-ttgcatgaatcgaagtgttttctt 13428488  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 387 - 438
Target Start/End: Complemental strand, 48896127 - 48896075
Alignment:
Q  387 agagaaaagagtcataaagaatgtatgtaaa-ggatttgtcgaaccaccttta 438  Q
    |||||||||||||||| | ||||||||||||  | ||||||||||||||||||    
T  48896127 agagaaaagagtcatacataatgtatgtaaactggtttgtcgaaccaccttta 48896075  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 145; Significance: 5e-76; HSPs: 22)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 145; E-Value: 5e-76
Query Start/End: Original strand, 312 - 540
Target Start/End: Original strand, 22397548 - 22397777
Alignment:
Q  312 aataagagttttccataga-aaaacgggtcgcaaatcacctatacaaaattctaaaa-cattcaaagtaccggagcgagagaaaagagtcataaagaatg 409  Q
    |||||||||||||| |||  |||||||||||||||||||||||||| |||||||||| || || ||||||||| ||||||||||| ||||||||||||||    
T  22397548 aataagagttttccgtagggaaaacgggtcgcaaatcacctatacagaattctaaaaacactcgaagtaccggcgcgagagaaaatagtcataaagaatg 22397647  T
Q  410 tatgtaaaggatttgtcgaaccacctttatttttaatgcattgtattttacctttcc-tttacgtttctgcaatttaaacttaatgccttaactttgctt 508  Q
    ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||    ||||| |||    
T  22397648 tatgtaaaggatttgtcgaacaacctttatttttaatgcattgtattttacctttccttttaagtttctgcaatttaaacttaatgc--agacttttctt 22397745  T
Q  509 ttaaaaccttttttctgtcgaaagacgccaca 540  Q
    |||||||||||||| |||||||||||||||||    
T  22397746 ttaaaaccttttttttgtcgaaagacgccaca 22397777  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 113; E-Value: 6e-57
Query Start/End: Original strand, 234 - 449
Target Start/End: Complemental strand, 16177519 - 16177304
Alignment:
Q  234 tgggagacaagcgtttgtctacatggaagtagtgctgattgtgggattcgtttctttccaaattagtatctttgtattaataagagttttccata-gaaa 332  Q
    ||||||||||||| ||||||||||||||| |||||||||||||||||| |||||||||| | ||| | ||| ||||| ||||  ||||||||||| | ||    
T  16177519 tgggagacaagcggttgtctacatggaaggagtgctgattgtgggattagtttctttcc-acttattttctatgtataaatattagttttccatatggaa 16177421  T
Q  333 aacgggtcgcaaatcacctatacaaaattctaaaacattcaaagtaccggagcgagagaaaagagtcataaagaatgtatgtaaaggatttgtcgaacca 432  Q
    |||||||||||||| |||||||||||||||||||||| || |||||||      ||||||||||||||||||||||||||||||||||||| ||||||||    
T  16177420 aacgggtcgcaaataacctatacaaaattctaaaacactcgaagtaccaacataagagaaaagagtcataaagaatgtatgtaaaggatttttcgaacca 16177321  T
Q  433 cctttatttttaatgca 449  Q
    | |||||||||||||||    
T  16177320 catttatttttaatgca 16177304  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 90; E-Value: 3e-43
Query Start/End: Original strand, 233 - 445
Target Start/End: Complemental strand, 15830238 - 15830026
Alignment:
Q  233 atgggagacaagcgtttgtctacatggaagtagtgctgattgtgggattcgtttctttccaaattagtatctttgtattaataagagttttccata-gaa 331  Q
    ||||||||||| |  ||||||||||||||  |||||| ||| ||||||| |||||||||||  ||| | ||| ||||| ||||| |||||| |||| | |    
T  15830238 atgggagacaaacagttgtctacatggaaagagtgctaattatgggattagtttctttccac-ttattttctatgtataaataatagttttgcataagga 15830140  T
Q  332 aaacgggtcgcaaatcacctatacaaaattctaaaacattcaaagtaccggagcgagagaaaagagtcataaagaatgtatgtaaaggatttgtcgaacc 431  Q
    |||||||||||||||| |||||||| |||||||||||| |||||||| | | | ||||||||||||||||||| |||||||||||| ||||||||||| |    
T  15830139 aaacgggtcgcaaatcgcctatacagaattctaaaacactcaaagtatcagtgtgagagaaaagagtcataaataatgtatgtaaaagatttgtcgaatc 15830040  T
Q  432 acctttatttttaa 445  Q
    || |||||||||||    
T  15830039 acttttatttttaa 15830026  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 83; E-Value: 5e-39
Query Start/End: Original strand, 331 - 531
Target Start/End: Complemental strand, 17524998 - 17524797
Alignment:
Q  331 aaaacgggtcgcaaatcacctatacaaaattctaaaacattcaaagtaccggagcgagagaaaagagtcataaagaatgtatgtaaaggatttgtcgaac 430  Q
    ||||| |||||||||||||||||||| |||||||||||| || |||| | || | ||||||||||||||||||||||||||| ||||||| |||||| ||    
T  17524998 aaaacaggtcgcaaatcacctatacataattctaaaacactcgaagtgctggcgtgagagaaaagagtcataaagaatgtatttaaagga-ttgtcggac 17524900  T
Q  431 cacctttatttttaatgcattgtattttacctttcctttacgtttctgcaa-tttaaacttaatgccttaactttgctttt-aaaaccttttttctgtcg 528  Q
     |||||||||||||||||||| || ||||  ||| ||||| |||||| ||| |||||| ||||| |||| |||||| |||| |||||||||||| | |||    
T  17524899 aacctttatttttaatgcattataatttattttttctttaagtttctacaattttaaaattaattcctttactttgtttttaaaaaccttttttttatcg 17524800  T
Q  529 aaa 531  Q
    |||    
T  17524799 aaa 17524797  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 82; E-Value: 2e-38
Query Start/End: Original strand, 33 - 202
Target Start/End: Complemental strand, 17525401 - 17525233
Alignment:
Q  33 attctctccgttgattatattccgtcgaaaatggcatttcttggggggcaatttgttagctggtattttcaccagcctcatttaatgtggtcaacattgg 132  Q
    ||||||||| |||| ||||||  ||||||||| |||||| ||||||||||||||||||||||||| ||||||||| |||||||||||||||||||||| |    
T  17525401 attctctcctttgaatatattttgtcgaaaatagcattt-ttggggggcaatttgttagctggtaatttcaccagtctcatttaatgtggtcaacattag 17525303  T
Q  133 ttgatttttactcttgcaggaattgaagtcttttcttcaatcaaaggagtttcaaagagatgttggactt 202  Q
    |||| |||||||| |  |||||| |||| |||||||||||   ||| |||||||| |||||||| |||||    
T  17525302 ttgacttttactcctctaggaatcgaagccttttcttcaacttaagaagtttcaacgagatgttagactt 17525233  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 75; E-Value: 3e-34
Query Start/End: Original strand, 318 - 449
Target Start/End: Original strand, 1177214 - 1177349
Alignment:
Q  318 agttttccatagaaaaacgggtcgcaaatcacctatacaaaattctaaaacattcaaagtaccggagcgagagaaaagagtcataaaga----atgtatg 413  Q
    |||||| ||||| ||||| || ||||||||| ||||||| |||||||||||| || ||||||  | |||||||||||||||||||||||    |||||||    
T  1177214 agttttgcataggaaaacaggacgcaaatcatctatacagaattctaaaacactcgaagtactagcgcgagagaaaagagtcataaagaatacatgtatg 1177313  T
Q  414 taaaggatttgtcgaaccacctttatttttaatgca 449  Q
    ||||||||||||||||||||||||||||||||||||    
T  1177314 taaaggatttgtcgaaccacctttatttttaatgca 1177349  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 21 - 147
Target Start/End: Original strand, 31125747 - 31125872
Alignment:
Q  21 tcaaaaatgtcaattctctccgttgattatattccgtcgaaaatggcatttcttggggggcaatttgttagctggtattttcaccagcctcatttaatgt 120  Q
    ||||||||| ||||||||||| |||| ||||||| || ||||||  ||||| || ||||||||||| ||||||| ||||||||||| |||||||||||||    
T  31125747 tcaaaaatgccaattctctcctttgaatatattcagtagaaaatttcattt-ttagggggcaattttttagctgatattttcaccatcctcatttaatgt 31125845  T
Q  121 ggtcaacattggttgatttttactctt 147  Q
    |||||||||| ||||| ||||||||||    
T  31125846 ggtcaacattagttgacttttactctt 31125872  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 66; E-Value: 6e-29
Query Start/End: Original strand, 357 - 490
Target Start/End: Complemental strand, 18713842 - 18713709
Alignment:
Q  357 aaattctaaaacattcaaagtaccggagcgagagaaaagagtcataaagaatgtatgtaaaggatttgtcgaaccacctttatttttaatgcattgtatt 456  Q
    |||||||| |||| |||||||||||   |||||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||| ||| || | |    
T  18713842 aaattctataacactcaaagtaccgtcacgagagaaaagagttatacagaatgtatgtaaaggatttgtcgaaccacctttatttttaaagcaatgcaat 18713743  T
Q  457 ttacctttcctttacgtttctgcaatttaaactt 490  Q
    ||| | || ||||| ||||||||| ||| |||||    
T  18713742 ttatcatttctttaagtttctgcacttttaactt 18713709  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 357 - 490
Target Start/End: Original strand, 17947890 - 17948023
Alignment:
Q  357 aaattctaaaacattcaaagtaccggagcgagagaaaagagtcataaagaatgtatgtaaaggatttgtcgaaccacctttatttttaatgcattgtatt 456  Q
    |||||||| ||||||| ||||| ||| || |||| ||||||| ||| | ||||||||||||||||||||||||||||||||||||||||| || || | |    
T  17947890 aaattctacaacattcgaagtaacggcgcaagaggaaagagttatataaaatgtatgtaaaggatttgtcgaaccacctttatttttaattcaatgcaat 17947989  T
Q  457 ttacctttcctttacgtttctgcaatttaaactt 490  Q
    ||| |||||||||| |||| |||| ||| |||||    
T  17947990 ttatctttcctttaagtttatgcatttttaactt 17948023  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 385 - 490
Target Start/End: Original strand, 14762985 - 14763090
Alignment:
Q  385 cgagagaaaagagtcataaagaatgtatgtaaaggatttgtcgaaccacctttatttttaatgcattgtattttacctttcctttacgtttctgcaattt 484  Q
    |||||||||||||| ||| ||||||||||||||||| || ||||||||||||||||||||||||| || | |||| |||| ||||| ||||||||| |||    
T  14762985 cgagagaaaagagttatacagaatgtatgtaaaggagttctcgaaccacctttatttttaatgcaatgcaatttatcttttctttaagtttctgcacttt 14763084  T
Q  485 aaactt 490  Q
     |||||    
T  14763085 taactt 14763090  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 234 - 500
Target Start/End: Original strand, 31126065 - 31126351
Alignment:
Q  234 tgggagacaagcgtttgtctacatggaagtagtgctgattgtgggattcgtttctttccaaattagtatctttgtattaataagagttttccataga-aa 332  Q
    ||||||||||||| ||||||||||||||| |||||| ||  ||||||| |||||||||||  ||| |  || ||||| ||||| |||||||| |||  ||    
T  31126065 tgggagacaagcgattgtctacatggaaggagtgctaatcttgggattagtttctttccac-ttatttcctatgtataaataatagttttccttagggaa 31126163  T
Q  333 aacgggtcgcaaatcacctatacaaaattctaaaacattcaaagtaccggagcgagagaaaagagtcataa------------agaatgtatgtaaagga 420  Q
    |||||||| |||||| ||||||   |||||||||||| || ||||| |   || |||||||||||||||||            | |||||||||||||||    
T  31126164 aacgggtctcaaatctcctatatggaattctaaaacactcgaagtaacaacgcaagagaaaagagtcataaatctcatattttaaaatgtatgtaaagga 31126263  T
Q  421 tttgtcgaaccacctttatttttaatgca-------ttgtattttacctttcctttacgtttctgcaattt-aaacttaatgccttaa 500  Q
    |||| |||||||||||||||| |||||||       |||||||||  |||| ||||  ||||||||||||| ||||||||||| ||||    
T  31126264 tttgccgaaccacctttatttataatgcacttgcatttgtattttttcttttctttgagtttctgcaatttaaaacttaatgcattaa 31126351  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 56 - 166
Target Start/End: Original strand, 22394072 - 22394179
Alignment:
Q  56 gtcgaaaatggcatttcttggggggcaatttgttagctggtattttcaccagcctcatttaatgtggtcaacattggttgatttttactcttgcaggaat 155  Q
    |||||||||| ||||| |||||||||||| |||||| ||||| ||||||||||||  |||||||||||||||||| |||   ||||||||||||||||||    
T  22394072 gtcgaaaatgacattt-ttggggggcaatctgttagttggtaatttcaccagcct--tttaatgtggtcaacattagttccgttttactcttgcaggaat 22394168  T
Q  156 tgaagtctttt 166  Q
      |||||||||    
T  22394169 caaagtctttt 22394179  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 86 - 170
Target Start/End: Complemental strand, 16177759 - 16177672
Alignment:
Q  86 tgttagctggtattttcacc---agcctcatttaatgtggtcaacattggttgatttttactcttgcaggaattgaagtcttttcttc 170  Q
    ||||||||||||||||||||   |||||||||||||||||| |||||| ||||| ||||||||||| ||||||  |||||||||||||    
T  16177759 tgttagctggtattttcacctccagcctcatttaatgtggttaacattagttgacttttactcttgtaggaatcaaagtcttttcttc 16177672  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 127 - 204
Target Start/End: Original strand, 1176918 - 1176994
Alignment:
Q  127 cattggttgatttttactcttgcaggaattgaagtcttttcttcaatcaaaggagtttcaaagagatgttggacttag 204  Q
    |||| ||||| |||||||||||||||||| ||| ||||||||||||| ||||||| ||||| ||||||||||| ||||    
T  1176918 cattagttgacttttactcttgcaggaatcgaaatcttttcttcaataaaaggag-ttcaacgagatgttggatttag 1176994  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 387 - 488
Target Start/End: Complemental strand, 28712461 - 28712360
Alignment:
Q  387 agagaaaagagtcataaagaatgtatgtaa-aggatttgtcgaaccacctttatttttaatgcattgtattttacctttcctttacgtttctgcaattta 485  Q
    |||||||||||||||| | |||||||||||   ||||||||||||||||||||   |||||||| |||| ||||||||| ||||| ||||||||  ||||    
T  28712461 agagaaaagagtcatatataatgtatgtaatctgatttgtcgaaccaccttta-cattaatgcaatgtaatttaccttttctttaagtttctgcgtttta 28712363  T
Q  486 aac 488  Q
    |||    
T  28712362 aac 28712360  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 387 - 438
Target Start/End: Original strand, 13002854 - 13002906
Alignment:
Q  387 agagaaaagagtcataaagaatgtatgtaaa-ggatttgtcgaaccaccttta 438  Q
    |||||||||||||||| ||||||||||||||  ||||||||||||||||||||    
T  13002854 agagaaaagagtcatacagaatgtatgtaaactgatttgtcgaaccaccttta 13002906  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 97 - 183
Target Start/End: Complemental strand, 32784534 - 32784447
Alignment:
Q  97 attttcaccagcctcatttaatgtggtcaacattggttgatttttactcttgcaggaattgaagtc-ttttcttcaatcaaaggagtt 183  Q
    ||||||| ||| ||||||||||||||| || ||| ||||| ||||||| || ||||||||||| || |||||| ||||||| ||||||    
T  32784534 attttcatcagtctcatttaatgtggttaatattagttgacttttacttttacaggaattgaaatctttttctacaatcaatggagtt 32784447  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 405 - 475
Target Start/End: Complemental strand, 25945916 - 25945846
Alignment:
Q  405 gaatgtatgtaaag-gatttgtcgaaccacctttatttttaatgcattgtattttacctttcctttacgttt 475  Q
    |||||||||||||  ||||||| || |||||||||||||||||||| || ||||||||| ||||||| ||||    
T  25945916 gaatgtatgtaaactgatttgtaga-ccacctttatttttaatgcaatgcattttacctctcctttaagttt 25945846  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 389 - 438
Target Start/End: Original strand, 24154179 - 24154229
Alignment:
Q  389 agaaaagagtcataaagaatgtatgtaaa-ggatttgtcgaaccaccttta 438  Q
    |||||||||||||| | ||||||||||||  ||||||||||||||||||||    
T  24154179 agaaaagagtcatacaaaatgtatgtaaactgatttgtcgaaccaccttta 24154229  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #20
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 387 - 431
Target Start/End: Original strand, 10163272 - 10163317
Alignment:
Q  387 agagaaaagagtcataaagaatgtatgtaaa-ggatttgtcgaacc 431  Q
    |||||||||||||||| ||||||||||||||  |||||||||||||    
T  10163272 agagaaaagagtcatatagaatgtatgtaaactgatttgtcgaacc 10163317  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #21
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 387 - 438
Target Start/End: Complemental strand, 16143240 - 16143188
Alignment:
Q  387 agagaaaagagtcataaagaatgtatgtaa-aggatttgtcgaaccaccttta 438  Q
    |||||||||||| ||| |||||||||||||   ||||||||||||||||||||    
T  16143240 agagaaaagagttatatagaatgtatgtaatctgatttgtcgaaccaccttta 16143188  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #22
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 387 - 490
Target Start/End: Complemental strand, 16793368 - 16793265
Alignment:
Q  387 agagaaaagagtcataaagaatgtatgtaa-aggatttgtcgaaccacctttatttttaatgcattgtattttacctttcctttacgtttctgcaattta 485  Q
    |||||||||||||||| |  ||||||||||   ||||||||||||||  |||| |||||||||| || | ||||||||| | ||| ||||||||| |||     
T  16793368 agagaaaagagtcatacaatatgtatgtaatctgatttgtcgaaccattttta-ttttaatgcaatgcaatttaccttttccttaagtttctgcattttt 16793270  T
Q  486 aactt 490  Q
    |||||    
T  16793269 aactt 16793265  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 132; Significance: 3e-68; HSPs: 11)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 132; E-Value: 3e-68
Query Start/End: Original strand, 306 - 540
Target Start/End: Complemental strand, 11361830 - 11361595
Alignment:
Q  306 tgtattaataagagttttccataga-aaaacgggtcgcaaatcacctatacaaaattctaaaacattcaaagtaccggagcgagagaaaagagtcataaa 404  Q
    ||||| |||||||||||||| |||  ||||| ||||| | |||||||||||| |||||||||||| || |  |||||  ||||| ||||||||| | |||    
T  11361830 tgtataaataagagttttccgtagggaaaacaggtcgtagatcacctatacagaattctaaaacactcgacttaccgacgcgagggaaaagagttacaaa 11361731  T
Q  405 gaatgtatgtaaaggatttgtcgaaccacctttatttttaatgcattgtattttacctttcctttacgtttctgcaatttaaacttaatgccttaacttt 504  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||  |||||||||||||||||||||||||| |||||    
T  11361730 gaatgtatgtaaaggatttgtcgaaccacctttatttttaatgcattgtattttacctttcatttaaatttctgcaatttaaacttaatgcctttacttt 11361631  T
Q  505 gcttttaaaaccttttttctgtcgaaagacgccaca 540  Q
    ||||||||||| ||||| ||||| |||||| |||||    
T  11361630 gcttttaaaacttttttcctgtcaaaagacaccaca 11361595  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 123; E-Value: 6e-63
Query Start/End: Original strand, 332 - 533
Target Start/End: Original strand, 9409168 - 9409370
Alignment:
Q  332 aaacgggtcgcaaatcacctatacaaaattctaaaacattcaaagtaccggagcgagagaaaagagtcataaagaatgtatgtaaaggatttgtcgaacc 431  Q
    |||||||||||||||||| |||| | |||||||||||| || ||||||||| || |||||||| ||| ||||||||||||||||||||||||||||||||    
T  9409168 aaacgggtcgcaaatcacttatatagaattctaaaacactcgaagtaccggcgcaagagaaaaaagttataaagaatgtatgtaaaggatttgtcgaacc 9409267  T
Q  432 acctttatttttaatgcattgtattttacctttcctttacgtttctgcaatttaaacttaatgccttaactttgc-ttttaaaaccttttttctgtcgaa 530  Q
    |||||||||||||||||||||||||||| |||||||||| |||| ||||||||||||||||| | || ||||||| ||||||||||  |||||||||| |    
T  9409268 acctttatttttaatgcattgtattttatctttcctttaagtttatgcaatttaaacttaatacttttactttgctttttaaaaccccttttctgtcgta 9409367  T
Q  531 aga 533  Q
    |||    
T  9409368 aga 9409370  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 100; E-Value: 3e-49
Query Start/End: Original strand, 85 - 228
Target Start/End: Complemental strand, 11362160 - 11362017
Alignment:
Q  85 ttgttagctggtattttcaccagcctcatttaatgtggtcaacattggttgatttttactcttgcaggaattgaagtcttttcttcaatcaaaggagttt 184  Q
    ||||||||||||||||||||||||||||||||| |||||||||||| ||||| ||||||||||||||| |||||||||||||||||||   |||||||||    
T  11362160 ttgttagctggtattttcaccagcctcatttaaagtggtcaacattagttgacttttactcttgcaggtattgaagtcttttcttcaacttaaggagttt 11362061  T
Q  185 caaagagatgttggacttagcattgaaaagtctcgaagccttaa 228  Q
    ||| |||||||||||||||||||  |||| ||||||||||||||    
T  11362060 caacgagatgttggacttagcatgaaaaattctcgaagccttaa 11362017  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 318 - 490
Target Start/End: Complemental strand, 16675259 - 16675086
Alignment:
Q  318 agttttccata-gaaaaacgggtcgcaaatcacctatacaaaattctaaaacattcaaagtaccggagcgagagaaaagagtcataaagaatgtatgtaa 416  Q
    ||||||||||| |||||||||||| |||||| | |||| | | |||||||||| || ||||||||| ||||||||| ||||| ||| |||||||||||||    
T  16675259 agttttccatatgaaaaacgggtcacaaatcccttatagata-ttctaaaacactcgaagtaccggtgcgagagaagagagttatacagaatgtatgtaa 16675161  T
Q  417 ag-gatttgtcgaaccacctttatttttaatgcattgtattttacctttcctttacgtttctgcaatttaaactt 490  Q
    |  ||||||||||||||| |||||||| |||||| |  | ||||||||| ||||| ||||||||| |||||||||    
T  16675160 aatgatttgtcgaaccacttttattttaaatgcaatacaatttaccttttctttatgtttctgcattttaaactt 16675086  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 387 - 449
Target Start/End: Complemental strand, 5358102 - 5358040
Alignment:
Q  387 agagaaaagagtcataaagaatgtatgtaaaggatttgtcgaaccacctttatttttaatgca 449  Q
    |||||||||||||||| | |||||||||||| |||||||||||| ||||||||||||||||||    
T  5358102 agagaaaagagtcatacataatgtatgtaaatgatttgtcgaactacctttatttttaatgca 5358040  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 318 - 490
Target Start/End: Complemental strand, 4697626 - 4697454
Alignment:
Q  318 agttttccata-gaaaaacgggtcgcaaatcacctatacaaaattctaaaacattcaaagtaccggagcgagagaaaagagtcataaagaatgtatgtaa 416  Q
    ||||||||||| | |||| | |||||||||||| |||| ||| |||||||||| |||||| ||||| | ||||||| | ||| ||| | |||||||||||    
T  4697626 agttttccatatggaaaatgagtcgcaaatcacttatagaaa-ttctaaaacactcaaagcaccggcgtgagagaacaaagttatacaaaatgtatgtaa 4697528  T
Q  417 -aggatttgtcgaaccacctttatttttaatgcattgtattttacctttcctttacgtttctgcaatttaaactt 490  Q
       |||| |||||||||||||||  ||||||||| |  | ||||||||| ||||| |||| |||  |||||||||    
T  4697527 tctgattcgtcgaaccaccttta-ctttaatgcaatacaatttaccttttctttaagtttatgcgttttaaactt 4697454  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 428 - 475
Target Start/End: Original strand, 18558469 - 18558516
Alignment:
Q  428 aaccacctttatttttaatgcattgtattttacctttcctttacgttt 475  Q
    |||||||||||||||||||||| || ||||||| ||||||||| ||||    
T  18558469 aaccacctttatttttaatgcaatgcattttacatttcctttaagttt 18558516  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 387 - 437
Target Start/End: Original strand, 26654144 - 26654195
Alignment:
Q  387 agagaaaagagtcataaagaatgtatgtaa-aggatttgtcgaaccaccttt 437  Q
    |||||||||||||||| | ||||||||||| | |||||||||||||||||||    
T  26654144 agagaaaagagtcatacataatgtatgtaatatgatttgtcgaaccaccttt 26654195  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 52 - 130
Target Start/End: Complemental strand, 10071078 - 10071001
Alignment:
Q  52 ttccgtcgaaaatggcatttcttggggggcaatttgttagctggtattttcaccagcctcatttaatgtggtcaacatt 130  Q
    ||||||||||||| |||||| |||||||| | |||||||||  ||| ||||  ||| |||||||||| |||||||||||    
T  10071078 ttccgtcgaaaattgcattt-ttggggggaattttgttagcctgtaatttcgacaggctcatttaatatggtcaacatt 10071001  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 387 - 438
Target Start/End: Complemental strand, 12424850 - 12424798
Alignment:
Q  387 agagaaaagagtcataaagaatgtatgtaaa-ggatttgtcgaaccaccttta 438  Q
    |||||||||||||||| | ||||||||||||   |||||||||||||||||||    
T  12424850 agagaaaagagtcatacaaaatgtatgtaaaccaatttgtcgaaccaccttta 12424798  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 387 - 438
Target Start/End: Complemental strand, 24924958 - 24924906
Alignment:
Q  387 agagaaaagagtcataaagaatgtatgtaa-aggatttgtcgaaccaccttta 438  Q
    |||||||||||||||| | |||||||||||   ||||||||||||||||||||    
T  24924958 agagaaaagagtcatacataatgtatgtaatctgatttgtcgaaccaccttta 24924906  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 128; Significance: 6e-66; HSPs: 20)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 128; E-Value: 6e-66
Query Start/End: Original strand, 234 - 495
Target Start/End: Complemental strand, 20146437 - 20146169
Alignment:
Q  234 tgggagacaagcgtttgtctacatggaagtagtgctgattgtgggattcgtttctttccaaattagtatctttgtattaataagagttttccata-gaaa 332  Q
    ||||||||||| | |||||||||| |||| |||| |||| |||||| | |||||||||||| ||| |  |||||||| ||||||||||||||||| | ||    
T  20146437 tgggagacaagtgattgtctacatagaaggagtgttgatcgtgggactagtttctttccaagttatttgctttgtataaataagagttttccatatggaa 20146338  T
Q  333 aacgggtcgcaaatcacctatacaaaattctaaaacattcaaagtaccggagcgagagaaaagagtcataaagaatgtatgtaaaggatttgtcgaacca 432  Q
    || |||||||||||||||||||||||||||||||||| |||||||||||| |||||||||||||||||||||| ||||||||||||||||| | | ||||    
T  20146337 aatgggtcgcaaatcacctatacaaaattctaaaacactcaaagtaccggtgcgagagaaaagagtcataaag-atgtatgtaaaggattttttggacca 20146239  T
Q  433 cctttatttttaatgca-------ttgtattttacctttcctttacgtttctgcaatttaaacttaatgc 495  Q
     ||||||||||||||||       || |||||| ||||| ||||| ||||||||||||||||||||||||    
T  20146238 tctttatttttaatgcacttgcatttttatttttccttttctttaagtttctgcaatttaaacttaatgc 20146169  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 111; E-Value: 9e-56
Query Start/End: Original strand, 234 - 514
Target Start/End: Original strand, 11013745 - 11014027
Alignment:
Q  234 tgggagacaagcgtttgtctacatggaagtagtgctgattgtgggattcgtttctttccaaattagtatctttgtattaataagagttttccataga-aa 332  Q
    ||||||||||| | ||||||||||||||| ||||||||| ||||||||    | ||||||  |   | ||| |||||  ||| |||||||||||||  ||    
T  11013745 tgggagacaagtggttgtctacatggaagaagtgctgatcgtgggattgtactttttccagttatttttctatgtatatataggagttttccataggtaa 11013844  T
Q  333 aacgggtcgcaaatcacctatacaaaattctaaaacattcaaagtaccggagcgagagaaaagagtcataaagaatgtatgtaaaggatttgtcgaacca 432  Q
    || |||| ||||||||||||||||||||| ||||||| || || |||| |   ||||||||||||||||||||||| ||||||||||||||||||| |||    
T  11013845 aatgggttgcaaatcacctatacaaaattttaaaacactcgaaataccagcttgagagaaaagagtcataaagaatatatgtaaaggatttgtcgagcca 11013944  T
Q  433 cctttatttttaatgcattgtattttacctttcctttacgtttctgcaa-tttaaacttaatgccttaactttgcttttaaaa 514  Q
    |||||||||||||||||||||| ||||  ||||||||| ||||| | || ||||||||||||||||| |||||||||||||||    
T  11013945 cctttatttttaatgcattgtactttatttttcctttaagtttcaggaattttaaacttaatgcctttactttgcttttaaaa 11014027  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 95; E-Value: 3e-46
Query Start/End: Original strand, 234 - 484
Target Start/End: Complemental strand, 33103273 - 33103021
Alignment:
Q  234 tgggagacaagcgtttgtctacatggaagtagtgctgattgtgggattcgtttctttccaaattagtatctt-tgtattaataagagttttccataga-- 330  Q
    ||||||||||| | ||||||||||||||| |||| |||||||||||||    | ||||||  ||| | |  | ||||| ||||  ||||||||||||       
T  33103273 tgggagacaagtggttgtctacatggaagaagtgttgattgtgggattatgctttttccag-ttattttggtatgtataaatagtagttttccatagggg 33103175  T
Q  331 aaaacgggtcgcaaatcacctatacaaaattctaaaacattcaaagtaccggagcgagagaaaagagtcataaagaatgtatgtaaaggatttgtcgaac 430  Q
    ||||| |||||||||||||||||||| |||||||||||| || ||||||||  | ||||||||||||||||| |||||||||||||||||||||||||||    
T  33103174 aaaacaggtcgcaaatcacctatacataattctaaaacactcgaagtaccgacgtgagagaaaagagtcatatagaatgtatgtaaaggatttgtcgaac 33103075  T
Q  431 cacctttatttttaatgcattgtattttacctttcctttacgtttctgcaattt 484  Q
     || ||||||||||||||| || | |||| |||||||||| |||||||||||||    
T  33103074 tacatttatttttaatgcaatgcaatttatctttcctttaagtttctgcaattt 33103021  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 82; E-Value: 2e-38
Query Start/End: Original strand, 89 - 226
Target Start/End: Complemental strand, 20146686 - 20146549
Alignment:
Q  89 tagctggtattttcaccagcctcatttaatgtggtcaacattggttgatttttactcttgcaggaattgaagtcttttcttcaatcaaaggagtttcaaa 188  Q
    |||||||||| |||||||| |||||||||||||| ||||||| ||| | | |||||||||||||||| ||||||||||  ||||||  ||||||||| |     
T  20146686 tagctggtatattcaccagtctcatttaatgtggccaacattagttaactattactcttgcaggaatcgaagtcttttactcaatcgtaggagtttcgac 20146587  T
Q  189 gagatgttggacttagcattgaaaagtctcgaagcctt 226  Q
    ||||||||||||||||||||||||||||||||||||||    
T  20146586 gagatgttggacttagcattgaaaagtctcgaagcctt 20146549  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 74; E-Value: 1e-33
Query Start/End: Original strand, 86 - 207
Target Start/End: Original strand, 11013493 - 11013614
Alignment:
Q  86 tgttagctggtattttcaccagcctcatttaatgtggtcaacattggttgatttttactcttgcaggaattgaagtcttttcttcaatcaaaggagtttc 185  Q
    |||||||||||| ||||| |||||||||||||||||||||||||| | | | |||||||||||||||||| ||||||||||||||||   ||||||||||    
T  11013493 tgttagctggtaatttcatcagcctcatttaatgtggtcaacattagcttacttttactcttgcaggaatcgaagtcttttcttcaacttaaggagtttc 11013592  T
Q  186 aaagagatgttggacttagcat 207  Q
     | |||||||||||||||||||    
T  11013593 gacgagatgttggacttagcat 11013614  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 66; E-Value: 6e-29
Query Start/End: Original strand, 318 - 490
Target Start/End: Original strand, 36571655 - 36571826
Alignment:
Q  318 agttttccatag-aaaaacgggtcgcaaatcacctatacaaaattctaaaacattcaaagtaccggagcgagagaaaagagtcataaagaatgtatgtaa 416  Q
    |||||||||||| ||||| |||||||||||||| |||| ||| ||||| |||| || ||||||  |  |||||||||||||| ||| | |||||||||||    
T  36571655 agttttccataggaaaaatgggtcgcaaatcacttatagaaa-ttctacaacactcgaagtactagcacgagagaaaagagttatacataatgtatgtaa 36571753  T
Q  417 aggatttgtcgaaccacctttatttttaatgcattgtattttacctttcctttacgtttctgcaatttaaactt 490  Q
    ||||||||||||||||||||||||||||||||| || | || | |||| ||||| ||||||||| ||| |||||    
T  36571754 aggatttgtcgaaccacctttatttttaatgcaatgcaattaatcttt-ctttaagtttctgcagttttaactt 36571826  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 65; E-Value: 3e-28
Query Start/End: Original strand, 319 - 446
Target Start/End: Original strand, 20150435 - 20150563
Alignment:
Q  319 gttttccataga-aaaacgggtcgcaaatcacctatacaaaattctaaaacattcaaagtaccggagcgagagaaaagagtcataaagaatgtatgtaaa 417  Q
    |||||||||||  |||||||||| ||||||||||||||| ||||||| |||| || ||||||||  ||||||||||| ||||||| | |||| ||| |||    
T  20150435 gttttccatagggaaaacgggtctcaaatcacctatacataattctacaacactcgaagtaccgacgcgagagaaaaaagtcatacaaaatgcatgcaaa 20150534  T
Q  418 ggatttgtcgaaccacctttatttttaat 446  Q
    ||||||||| |||||||||||||||||||    
T  20150535 ggatttgtcaaaccacctttatttttaat 20150563  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 320 - 470
Target Start/End: Original strand, 22607834 - 22607984
Alignment:
Q  320 ttttccatagaa-aaacgggtcgcaaatcacctatacaaaattctaaaacattcaaagtaccggagcgagagaaaagagtcataaagaatgtatgtaaag 418  Q
    |||||||||||  |||||||||||||||||| |||  ||  ||||| |||| || ||||||||  || |||||||||||| ||||| |||||||||||||    
T  22607834 ttttccatagaggaaacgggtcgcaaatcacttatggaat-ttctataacaatcgaagtaccgtcgcaagagaaaagagttataaaaaatgtatgtaaag 22607932  T
Q  419 gatttgtcgaaccacctttatttttaatgcattgtattttacctttccttta 470  Q
    ||| ||  ||||||||||||||||||||||| |||| |||| ||||||||||    
T  22607933 gatctgctgaaccacctttatttttaatgcaatgtagtttatctttccttta 22607984  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 234 - 446
Target Start/End: Original strand, 13201980 - 13202192
Alignment:
Q  234 tgggagacaagcgtttgtctacatggaagtagtgctgattgtgggattcgtttctttccaaattagtat-ctttgtattaataagagttttccatag-aa 331  Q
    ||||||||||||| ||||||| ||||||| ||||||||| ||||  || |  | ||||||  ||| | | || ||||| ||||  |||||| ||||| ||    
T  13201980 tgggagacaagcggttgtctaaatggaagaagtgctgatcgtggagttaggctttttccag-ttattttgctatgtataaatagtagtttttcataggaa 13202078  T
Q  332 aaacgggtcgcaaatcacctatacaaaattctaaaacattcaaagtaccggagcgagagaaaagagtcataaagaatgtatgtaaaggatttgtcgaacc 431  Q
    ||||  |||||||||||| |||| ||| ||||| |||| || || |||||| ||||||||||| ||| ||| | ||||||||||||||||||||||||||    
T  13202079 aaacatgtcgcaaatcacttatagaaa-ttctacaacactcgaaataccggcgcgagagaaaatagttatacataatgtatgtaaaggatttgtcgaacc 13202177  T
Q  432 acctttatttttaat 446  Q
    |||||||||||||||    
T  13202178 acctttatttttaat 13202192  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 318 - 476
Target Start/End: Complemental strand, 17615430 - 17615272
Alignment:
Q  318 agttttccataga-aaaacgggtcgcaaatcacctatacaaaattctaaaacattcaaagtaccggagcgagagaaaagagtcataaagaatgtatgtaa 416  Q
    ||||||||||||  |||||||||| | |||||| |||| ||| ||||| |||| || |||||| || | |||| |||||||| | | | |||||||||||    
T  17615430 agttttccatagggaaaacgggtcacgaatcacttatagaaa-ttctacaacactcgaagtacaggcgggagaaaaaagagttacacataatgtatgtaa 17615332  T
Q  417 aggatttgtcgaaccacctttatttttaatgcattgtattttacctttcctttacgtttc 476  Q
    |||||||||||||| ||||||||||| |||||| || | || |||||| ||||| |||||    
T  17615331 aggatttgtcgaacaacctttattttgaatgcaatgcagttaaccttttctttaagtttc 17615272  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 50 - 167
Target Start/End: Original strand, 22619654 - 22619770
Alignment:
Q  50 tattccgtcgaaaatggcatttcttggggggcaatttgttagctggtattttcaccagcctcatttaatgtggtcaacattggttgatttttactcttgc 149  Q
    ||||| |||||||||| ||||| ||||| ||||||||||||||   ||||| ||  || |||||||||||||||||||||| ||||| |||||   ||||    
T  22619654 tattcagtcgaaaatgacattt-ttgggaggcaatttgttagcctatatttccaaaaggctcatttaatgtggtcaacattagttgacttttatctttgc 22619752  T
Q  150 aggaattgaagtcttttc 167  Q
    |||||| |||||||||||    
T  22619753 aggaatcgaagtcttttc 22619770  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 357 - 447
Target Start/End: Original strand, 22620063 - 22620153
Alignment:
Q  357 aaattctaaaacattcaaagtaccggagcgagagaaaagagtcataaagaatgtatgtaaaggatttgtcgaaccacctttatttttaatg 447  Q
    |||||||| |||| || ||||||| ||||||||||||| ||| ||  | |  ||||||||| |||||||||||||||||||||||||||||    
T  22620063 aaattctacaacactcgaagtaccagagcgagagaaaatagttattcaaaccgtatgtaaaagatttgtcgaaccacctttatttttaatg 22620153  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 418 - 490
Target Start/End: Complemental strand, 20866293 - 20866221
Alignment:
Q  418 ggatttgtcgaaccacctttatttttaatgcattgtattttacctttcctttacgtttctgcaatttaaactt 490  Q
    ||||||||||||||||||||||||||||||||    | |||| |||| ||||| ||||||||||||| |||||    
T  20866293 ggatttgtcgaaccacctttatttttaatgcaacacaatttatcttttctttaagtttctgcaattttaactt 20866221  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 331 - 475
Target Start/End: Original strand, 22533687 - 22533830
Alignment:
Q  331 aaaacgggtcgcaaatcacctatacaaaattctaaaacattcaaagtaccggag-cgagagaaaagagtcataaagaatgtatgtaaa-ggatttgtcga 428  Q
    |||| |||||||||||||  |||| ||| ||||| |||||||||| |||||||| | || |||| |||| ||| ||||||||||||||  ||||||| |     
T  22533687 aaaatgggtcgcaaatcatttatagaaa-ttctacaacattcaaactaccggagtctagggaaacgagttatacagaatgtatgtaaactgatttgtag- 22533784  T
Q  429 accacctttatttttaatgcattgtattttacctttcctttacgttt 475  Q
    |||| ||||| |||||||||| || ||||||| ||||||||| ||||    
T  22533785 acca-ctttacttttaatgcaatgcattttacttttcctttaagttt 22533830  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 306 - 369
Target Start/End: Original strand, 13232737 - 13232801
Alignment:
Q  306 tgtattaataagagttttccataga-aaaacgggtcgcaaatcacctatacaaaattctaaaaca 369  Q
    ||||| ||||| ||||||||||||  ||||||| ||||||||||||||| || ||||||||||||    
T  13232737 tgtataaataatagttttccatagggaaaacggatcgcaaatcacctatgcataattctaaaaca 13232801  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 429 - 468
Target Start/End: Complemental strand, 20886610 - 20886571
Alignment:
Q  429 accacctttatttttaatgcattgtattttacctttcctt 468  Q
    ||||||||||||||||||||| || |||||||||||||||    
T  20886610 accacctttatttttaatgcaatgcattttacctttcctt 20886571  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 388 - 438
Target Start/End: Complemental strand, 23455242 - 23455191
Alignment:
Q  388 gagaaaagagtcataaagaatgtatgtaa-aggatttgtcgaaccaccttta 438  Q
    ||||||||||||||| | ||||||||||| | ||||||||||||||||||||    
T  23455242 gagaaaagagtcatacaaaatgtatgtaatatgatttgtcgaaccaccttta 23455191  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 85 - 167
Target Start/End: Complemental strand, 17615766 - 17615684
Alignment:
Q  85 ttgttagctggtattttcaccagcctcatttaatgtggtcaacattggttgatttttactcttgcaggaattgaagtcttttc 167  Q
    ||||||||  ||| ||||| ||| ||||||||||| |||||||||| ||||| |||||   |||||||||| ||| |||||||    
T  17615766 ttgttagcatgtaatttcaacagactcatttaatgcggtcaacattagttgacttttatctttgcaggaatcgaaatcttttc 17615684  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 86 - 142
Target Start/End: Original strand, 13232414 - 13232470
Alignment:
Q  86 tgttagctggtattttcaccagcctcatttaatgtggtcaacattggttgattttta 142  Q
    |||||| ||||| ||| |||| ||| ||||||||||||||||||| ||||| |||||    
T  13232414 tgttaggtggtaatttgaccaaccttatttaatgtggtcaacattagttgactttta 13232470  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 336 - 460
Target Start/End: Complemental strand, 18780712 - 18780587
Alignment:
Q  336 gggtcgcaaatcacctatacaaaattctaaaacattcaaagtaccggag-cgagagaaaagagtcataaagaatgtatgtaaag-gatttgtcgaac-ca 432  Q
    |||||||||||||  |||||| ||||||| |||| ||||| |||||| | | || |||| |||| ||| ||||||||||||||| ||||||| || | |     
T  18780712 gggtcgcaaatca--tatacagaattctacaacactcaaactaccggcgtccagggaaacgagttatacagaatgtatgtaaagtgatttgtagaccacc 18780615  T
Q  433 cctttatttttaatgcattgtattttac 460  Q
    |||||  ||||||||||||| |||||||    
T  18780614 ccttttattttaatgcattgcattttac 18780587  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0555 (Bit Score: 107; Significance: 2e-53; HSPs: 2)
Name: scaffold0555
Description:

Target: scaffold0555; HSP #1
Raw Score: 107; E-Value: 2e-53
Query Start/End: Original strand, 234 - 495
Target Start/End: Original strand, 5582 - 5851
Alignment:
Q  234 tgggagacaagcgtttgtctacatggaagtagtgctgattgtgggattcgtttctttccaaattagtatctttgtattaataagagttttccataga-aa 332  Q
    ||||||||||||| ||||||| ||||||| |||| |||| |||||||| ||||| |||||| ||| |  |||||||| ||||||||||||| ||||  ||    
T  5582 tgggagacaagcggttgtctatatggaaggagtgttgatcgtgggattagtttcattccaagttatttgctttgtataaataagagttttctatagggaa 5681  T
Q  333 aacgggtcgcaaatcacctatacaaaattctaaaacattcaaagtaccggagcgagagaaaagagtcataaagaatgtatgtaaaggatttgtcgaacca 432  Q
    ||||||||| |||||||||||||| |||||||||||  |  ||||||||   ||||| ||||||||||||| |||||||||||||| |||||||| ||||    
T  5682 aacgggtcgtaaatcacctatacagaattctaaaacgcttgaagtaccgacacgagaaaaaagagtcataaggaatgtatgtaaagaatttgtcggacca 5781  T
Q  433 cctttatttttaatgca-ttg------tattttacctttcctttacgtttctgcaatttaaacttaatgc 495  Q
    ||||||||||||||||| |||      |||||| ||||| ||||| |||| |||||||||||||||||||    
T  5782 cctttatttttaatgcacttgcattgttatttttccttttctttaagtttttgcaatttaaacttaatgc 5851  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0555; HSP #2
Raw Score: 70; E-Value: 3e-31
Query Start/End: Original strand, 93 - 226
Target Start/End: Original strand, 5337 - 5470
Alignment:
Q  93 tggtattttcaccagcctcatttaatgtggtcaacattggttgatttttactcttgcaggaattgaagtcttttcttcaatcaaaggagtttcaaagaga 192  Q
    |||||||||||||||||||||||| |||||||||| || ||||| ||||||||||||||| || ||||| ||||| |||||  ||| | |||| | ||||    
T  5337 tggtattttcaccagcctcatttattgtggtcaactttagttgacttttactcttgcaggtatcgaagttttttcatcaattgaagaattttcgacgaga 5436  T
Q  193 tgttggacttagcattgaaaagtctcgaagcctt 226  Q
    |||||||||||||||  |||||||||||||||||    
T  5437 tgttggacttagcatcaaaaagtctcgaagcctt 5470  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0264 (Bit Score: 104; Significance: 1e-51; HSPs: 2)
Name: scaffold0264
Description:

Target: scaffold0264; HSP #1
Raw Score: 104; E-Value: 1e-51
Query Start/End: Original strand, 234 - 540
Target Start/End: Complemental strand, 21097 - 20793
Alignment:
Q  234 tgggagacaagcgtttgtctacatggaagtagtgctgattgtgggattcgtttctttccaaattagtatctttgtattaataagagttttccatagaaa- 332  Q
    ||||||||||||| ||||| ||||||||| |||| |||| |||||||| |||||||||||  ||| |  || ||||| ||||  ||| ||||||||  |     
T  21097 tgggagacaagcggttgtcaacatggaaggagtgttgatcgtgggattagtttctttccac-ttatttcctatgtataaatagtagtcttccatagggac 20999  T
Q  333 aacgggtcgcaaatcacctatacaaaattctaaaacattcaaagtaccggagcgagagaaaagagtcataaagaatgtatgtaaaggatttgtcgaacca 432  Q
    || |||||||||||||| |||| | |||||||||||| |  ||||||     |||||||||||||||||||||||||||||||||| |||||| ||||||    
T  20998 aatgggtcgcaaatcacgtata-ataattctaaaacacttgaagtactaacacgagagaaaagagtcataaagaatgtatgtaaagaatttgtggaacca 20900  T
Q  433 cctttatttttaatgcattgtattttacctttcctttacgtttctgcaatttaaacttaatgccttaactttgcttttaaaaccttttttctgtcgaaag 532  Q
    |||||||||| ||||||||| |||||  |||||||||| ||||||||| |||||||||||||| || |   | ||||||||||| |||||||||| ||||    
T  20899 cctttattttaaatgcattgcattttttctttcctttaagtttctgcattttaaacttaatgcatttatactacttttaaaacc-tttttctgtcaaaag 20801  T
Q  533 acgccaca 540  Q
    ||||||||    
T  20800 acgccaca 20793  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0264; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 96 - 207
Target Start/End: Complemental strand, 21337 - 21225
Alignment:
Q  96 tattttcaccagcctcatttaatgtggtcaacattggttgatttttactcttgcaggaattgaag-tcttttcttcaatcaaaggagtttcaaagagatg 194  Q
    ||||||||||| ||||||||||| || |||||||| ||||| ||||| | ||||| |||| ||||   |||||||||| | || ||||||| | ||||||    
T  21337 tattttcaccatcctcatttaatatgatcaacatttgttgacttttatttttgcaagaatcgaagcatttttcttcaaccgaaagagtttcgacgagatg 21238  T
Q  195 ttggacttagcat 207  Q
    ||||||| |||||    
T  21237 ttggactaagcat 21225  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0002 (Bit Score: 72; Significance: 2e-32; HSPs: 2)
Name: scaffold0002
Description:

Target: scaffold0002; HSP #1
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 234 - 490
Target Start/End: Original strand, 374041 - 374294
Alignment:
Q  234 tgggagacaagcgtttgtctacatggaagtagtgctgattgtgggattc-gtttctttccaaattagtat-ctttgtattaataagagttttccatagaa 331  Q
    ||||||||||||| ||||||||||||||| ||||||||| ||| ||||  | || ||||  | ||| | | || ||||| ||||  ||||||||||||      
T  374041 tgggagacaagcggttgtctacatggaagaagtgctgatcgtgagattttgcttttttc--agttattttgctatgtataaatagtagttttccataggg 374138  T
Q  332 aaacgggtcgcaaatcacctatacaaaattctaaaacattcaaagtaccggagcgagagaaaagagtcataaagaatgtatgtaaaggatttgtcgaacc 431  Q
    |||  ||||||||||||| |||| ||| | ||| |||| ||||||||| || ||||||||||||||| ||| | ||||||||||||| ||||||||||||    
T  374139 aaaacggtcgcaaatcacttatagaaa-tgctacaacactcaaagtacaggcgcgagagaaaagagt-atacaaaatgtatgtaaagtatttgtcgaacc 374236  T
Q  432 acctttatttttaatgcattgtattttacctttcctttacgtttctgcaatttaaactt 490  Q
    |||||||||||||||||| || | |||| |||||||||| |||| |||||||| |||||    
T  374237 acctttatttttaatgcaatgcaatttatctttccttta-gtttttgcaattttaactt 374294  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0002; HSP #2
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 56 - 142
Target Start/End: Original strand, 373762 - 373847
Alignment:
Q  56 gtcgaaaatggcatttcttggggggcaatttgttagctggtattttcaccagcctcatttaatgtggtcaacattggttgattttta 142  Q
    |||||||||||| ||| ||||||||||||||||||| ||||  ||| |||| ||||||||||||||||||||||| ||||| |||||    
T  373762 gtcgaaaatggctttt-ttggggggcaatttgttagttggttattttaccaacctcatttaatgtggtcaacattagttgactttta 373847  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0337 (Bit Score: 66; Significance: 6e-29; HSPs: 2)
Name: scaffold0337
Description:

Target: scaffold0337; HSP #1
Raw Score: 66; E-Value: 6e-29
Query Start/End: Original strand, 318 - 490
Target Start/End: Complemental strand, 17392 - 17221
Alignment:
Q  318 agttttccataga-aaaacgggtcgcaaatcacctatacaaaattctaaaacattcaaagtaccggagcgagagaaaagagtcataaagaatgtatgtaa 416  Q
    ||||||||||||  |||||||||| |||||||| |||| ||| || || |||| || | ||||||| ||||||||||||||| ||| |||||||||||||    
T  17392 agttttccatagggaaaacgggtcacaaatcacttatagaaa-ttgtacaacactcga-gtaccggcgcgagagaaaagagttatacagaatgtatgtaa 17295  T
Q  417 aggatttgtcgaaccacctttatttttaatgcattgtattttacctttcctttacgtttctgcaatttaaactt 490  Q
    ||||||||||||||||||||||||||||| ||| || | |||| | || ||||| ||||||||| ||| |||||    
T  17294 aggatttgtcgaaccacctttatttttaaagcaatgcaatttatcatttctttaagtttctgcacttttaactt 17221  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0337; HSP #2
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 375 - 490
Target Start/End: Complemental strand, 4661 - 4546
Alignment:
Q  375 agtaccggagcgagagaaaagagtcataaagaatgtatgtaaaggatttgtcgaaccacctttatttttaatgcattgtattttacctttcctttacgtt 474  Q
    |||||||| ||||||||||||||| ||| |||||| || |||| ||||||| ||||||||||||||||||| ||| || | ||||   || ||||| |||    
T  4661 agtaccggcgcgagagaaaagagttatacagaatgcatttaaaagatttgtagaaccacctttatttttaaagcaatgcaatttattatttctttaagtt 4562  T
Q  475 tctgcaatttaaactt 490  Q
    |||||| ||| |||||    
T  4561 tctgcacttttaactt 4546  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0795 (Bit Score: 65; Significance: 3e-28; HSPs: 2)
Name: scaffold0795
Description:

Target: scaffold0795; HSP #1
Raw Score: 65; E-Value: 3e-28
Query Start/End: Original strand, 86 - 230
Target Start/End: Original strand, 5725 - 5869
Alignment:
Q  86 tgttagctggtattttcaccagcctcatttaatgtggtcaacattggttgatttttactcttgcaggaattgaagtcttttcttcaatcaaaggagtttc 185  Q
    |||||||||||||||| |||| |||||||||||| |||||||||| | ||| ||||  |||||||||||| |||| |||||| ||| | |||||||||||    
T  5725 tgttagctggtatttttaccaacctcatttaatgcggtcaacattaggtgactttttttcttgcaggaatcgaagccttttcctcagttaaaggagtttc 5824  T
Q  186 aaagagatgttggacttagcattgaaaagtctcgaagccttaaag 230  Q
    || |||||||| ||||||||||  ||||| || |||||| |||||    
T  5825 aacgagatgttagacttagcatgaaaaagccttgaagccctaaag 5869  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0795; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 234 - 294
Target Start/End: Original strand, 5971 - 6031
Alignment:
Q  234 tgggagacaagcgtttgtctacatggaagtagtgctgattgtgggattcgtttctttccaa 294  Q
    ||||||||||||| ||| ||||||||||  ||||||||| |||||||| ||||||||||||    
T  5971 tgggagacaagcggttgcctacatggaacgagtgctgatcgtgggattagtttctttccaa 6031  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0016 (Bit Score: 62; Significance: 2e-26; HSPs: 1)
Name: scaffold0016
Description:

Target: scaffold0016; HSP #1
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 318 - 418
Target Start/End: Complemental strand, 13092 - 12991
Alignment:
Q  318 agttttccataga-aaaacgggtcgcaaatcacctatacaaaattctaaaacattcaaagtaccggagcgagagaaaagagtcataaagaatgtatgtaa 416  Q
    ||||||||||||  ||||||||||||||||||||||| || |||||||||||| || ||||||  | |||||||||||||||||||||||||||||||||    
T  13092 agttttccatagggaaaacgggtcgcaaatcacctatgcagaattctaaaacactcgaagtactagcgcgagagaaaagagtcataaagaatgtatgtaa 12993  T
Q  417 ag 418  Q
    ||    
T  12992 ag 12991  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0161 (Bit Score: 54; Significance: 9e-22; HSPs: 1)
Name: scaffold0161
Description:

Target: scaffold0161; HSP #1
Raw Score: 54; E-Value: 9e-22
Query Start/End: Original strand, 93 - 205
Target Start/End: Complemental strand, 5388 - 5276
Alignment:
Q  93 tggtattttcaccagcctcatttaatgtggtcaacattggttgatttttactctt-gcaggaattgaagtcttttcttcaatcaaaggagtttcaaagag 191  Q
    ||||| |||||||||| ||||||||||||||||||||| ||||| ||||| |||| ||||||||  |||||||||||||||   |||||| ||||| |||    
T  5388 tggtaatttcaccagcatcatttaatgtggtcaacattagttgactttta-tcttcgcaggaatcaaagtcttttcttcaacttaaggagcttcaacgag 5290  T
Q  192 atgttggacttagc 205  Q
    ||||||||||||||    
T  5289 atgttggacttagc 5276  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0142 (Bit Score: 48; Significance: 4e-18; HSPs: 1)
Name: scaffold0142
Description:

Target: scaffold0142; HSP #1
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 306 - 459
Target Start/End: Complemental strand, 20725 - 20572
Alignment:
Q  306 tgtattaataagagttttccatagaaaa-acgggtcgcaaatcacctatacaaaattctaaaacattcaaagtaccggagcgagagaaaagagtcataaa 404  Q
    ||||| ||||| ||||||||||||  || |||||||||||||||| || | ||  |||||||||| || ||||||||| ||||||||||||||| ||| |    
T  20725 tgtataaataatagttttccataggcaagacgggtcgcaaatcacttacagaac-ttctaaaacactcgaagtaccggcgcgagagaaaagagttataca 20627  T
Q  405 gaatgtatgt-aaaggatttgtcgaaccacctttatttttaatgcattgtatttta 459  Q
     ||||||||| |||  ||||||| ||||||||||| |||||||||| |||| ||||    
T  20626 taatgtatgtgaaataatttgtcaaaccaccttta-ttttaatgcaatgtaattta 20572  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1102 (Bit Score: 39; Significance: 0.0000000000008; HSPs: 1)
Name: scaffold1102
Description:

Target: scaffold1102; HSP #1
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 318 - 442
Target Start/End: Original strand, 871 - 996
Alignment:
Q  318 agttttccata-gaaaaacgggtcgcaaatcacctatacaaaattctaaaacattcaaagtaccggagcgagagaaaagagtcataaagaatgtatgt-a 415  Q
    ||||||||||| | ||||||||| ||||||||| |||| ||| ||| |||||| || ||||||||| |||||| | |||||| ||| | ||||||||| |    
T  871 agttttccatacggaaaacgggttgcaaatcacttatagaaa-ttccaaaacactcgaagtaccggcgcgagaaagaagagttatacataatgtatgtaa 969  T
Q  416 aaggatttgtcgaaccacctttatttt 442  Q
    || ||||||| |||| |||||||||||    
T  970 aatgatttgttgaacaacctttatttt 996  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0040 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: scaffold0040
Description:

Target: scaffold0040; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 387 - 490
Target Start/End: Original strand, 26930 - 27031
Alignment:
Q  387 agagaaaagagtcataaagaatgtatgtaa-aggatttgtcgaaccacctttatttttaatgcattgtattttacctttcctttacgtttctgcaattta 485  Q
    |||||||||||||||| | |||||||||||    |||||||||||||||||||  ||||||||| || | |||| |||| ||||| ||||||||  ||||    
T  26930 agagaaaagagtcatacataatgtatgtaatctaatttgtcgaaccaccttta--tttaatgcaatgcaatttatcttttcttta-gtttctgcgtttta 27026  T
Q  486 aactt 490  Q
    |||||    
T  27027 aactt 27031  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0431 (Bit Score: 29; Significance: 0.0000008; HSPs: 1)
Name: scaffold0431
Description:

Target: scaffold0431; HSP #1
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 387 - 438
Target Start/End: Original strand, 5125 - 5177
Alignment:
Q  387 agagaaaagagtcataaagaatgtatgtaaa-ggatttgtcgaaccaccttta 438  Q
    |||||||||||||||| | ||||||||||||   |||||||||||||||||||    
T  5125 agagaaaagagtcatacaaaatgtatgtaaaccaatttgtcgaaccaccttta 5177  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0024 (Bit Score: 29; Significance: 0.0000008; HSPs: 1)
Name: scaffold0024
Description:

Target: scaffold0024; HSP #1
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 387 - 438
Target Start/End: Original strand, 38915 - 38967
Alignment:
Q  387 agagaaaagagtcataaagaatgtatgtaa-aggatttgtcgaaccaccttta 438  Q
    |||||||||||||||| | |||||||||||   ||||||||||||||||||||    
T  38915 agagaaaagagtcatataaaatgtatgtaatctgatttgtcgaaccaccttta 38967  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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