View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15954_low_9 (Length: 522)
Name: NF15954_low_9
Description: NF15954
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15954_low_9 |
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Alignment Details
Target: chr2 (Bit Score: 208; Significance: 1e-113; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 208; E-Value: 1e-113
Query Start/End: Original strand, 23 - 271
Target Start/End: Complemental strand, 36362726 - 36362473
Alignment:
| Q |
23 |
tggtgtgtgcg--cgcacacaccatgcatttgtaatttacatttaaagg--ttccatggtgtacctattttttggattttaggtttgaagaaaagcagat |
118 |
Q |
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| T |
36362726 |
tggtgtgtgcgcacacacacaccatgcatatgtaatttacatttaaaggaattccatggtgtacctattttttggattttaggtttgaagaaaagcagat |
36362627 |
T |
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| Q |
119 |
ctaggaaagatcgatccataaactctcgtaaacaaatatatgctagttcttattttcctttgttataccaaataacaaaatgagaaaaatagtagctagg |
218 |
Q |
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| T |
36362626 |
ctaggaaagatcgatccataaactctcgtaaacaaatatatgctagttcttattttcctttgttataccaaataacaaaatgagaaaaatagtagctagg |
36362527 |
T |
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| Q |
219 |
ttgaatacatgataaacccattaattattggt-agtatgtatagggattcatga |
271 |
Q |
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| T |
36362526 |
ttgaatacatgatagatccattaattattggtaagtatgtatagggattcatga |
36362473 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 192; E-Value: 1e-104
Query Start/End: Original strand, 318 - 513
Target Start/End: Complemental strand, 36362426 - 36362231
Alignment:
| Q |
318 |
ctaggtatggatccttaatctttgtgaccttgatttacgtacatcagcaataagggcatcacgagcagtaacaatcaatgcatgaggagcaaatatcaat |
417 |
Q |
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| T |
36362426 |
ctaggtatggatccttaatctttgtgaccttgatttacgtacatcagcaataagggcatcacgagcagtaacaatcaatgcatgaggagcaaatatcaat |
36362327 |
T |
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| Q |
418 |
gcatcaaacgtagtataatcaacccattccttcaacttctgttccttctcccagttttcaggtatcttaacctttcccttcatctcttccctatgc |
513 |
Q |
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| T |
36362326 |
gcatcaaacgtagtataatcaacccattccttcaacttctgttccttctcccagttttcaggtaccttaacctttcccttcatctcttccctatgc |
36362231 |
T |
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