View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15955_high_1 (Length: 681)
Name: NF15955_high_1
Description: NF15955
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15955_high_1 |
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Alignment Details
Target: chr5 (Bit Score: 412; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 412; E-Value: 0
Query Start/End: Original strand, 19 - 626
Target Start/End: Complemental strand, 988330 - 987732
Alignment:
| Q |
19 |
gttattgtttgcatgtctcctcttggtaattatcaatcttttgctgttaaatatgtgtcattaactctttcattcgactgaaatgtttttatcaaatgtg |
118 |
Q |
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| T |
988330 |
gttattgtttgcatgtctcctcttggtaattatcaatcttttgctgtaaaatatgtgtcattaactctttcattcgagtgaaatgtttttatcaaatgtg |
988231 |
T |
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| Q |
119 |
gcaagttagaaacgacctatatataggcttcctccactatttttatatgtacgatgtagtaaacgtgagatgactattcaagtatcttctaaatcttgat |
218 |
Q |
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| T |
988230 |
gcaagttagaaacgacctatacataggctttctccactatttttatatgtacgatgtagtaaacgtgagatgactattcaagtatcttctaaatcttgat |
988131 |
T |
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| Q |
219 |
ttgnnnnnnngctgaaggttgttctaaatcttgatagtctctggnnnnnnnnnnngaaggatgaaatgatattgtcctaaatcaattatgcgtgaattga |
318 |
Q |
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| T |
988130 |
ttgtttttttgctgaaggttgttctaaatcttgatagtctct----aaaaaaaaaaagggatgaaatgatattgtcctaaatcaattat----------- |
988046 |
T |
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| Q |
319 |
agtggcgtgaattgaagtggcgtgaaacatacatctcatgaatgaattgaaacatctaaaggtaaaggtgtgtggttagagggaatggaggagaggagga |
418 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||| |
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| T |
988045 |
----gcgtgaattgaagtggcgtgaaacatacatctcatgaatgaattgaaacatctaaggataaaggtgtgtggttagagggaatggaggagaggagga |
987950 |
T |
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| Q |
419 |
aaatattttaaatttgactactttttaattcaattatttgaaagatgaaaggtt----------aagaaaatatctctcaaagtcaattttatctctctt |
508 |
Q |
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|||||||||||||||||||||||||||||||||||||||| ||||||||||||| |||||||||||||||||||||||||||||||||||| |
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| T |
987949 |
aaatattttaaatttgactactttttaattcaattatttggaagatgaaaggttaagagaatggaagaaaatatctctcaaagtcaattttatctctctt |
987850 |
T |
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| Q |
509 |
tcattagtgaagaatttagaaccgatagaatatttattgcatgtttaaacttacaaaaatactttggttatatagatttcaacaaactcaacaaattgca |
608 |
Q |
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| T |
987849 |
tcattagtgaagaatttagaaccgatagaatatttgttgcatgtttagacttacaaaaatactttggttacacagatttcaacaaactcaacaaattgca |
987750 |
T |
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