View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF15955_high_7 (Length: 216)

Name: NF15955_high_7
Description: NF15955
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF15955_high_7
NF15955_high_7
[»] chr5 (9 HSPs)
chr5 (17-204)||(7192033-7192220)
chr5 (19-204)||(10661079-10661264)
chr5 (27-204)||(10653193-10653370)
chr5 (35-195)||(19606868-19607028)
chr5 (18-195)||(10557949-10558126)
chr5 (35-204)||(10603798-10603967)
chr5 (123-204)||(10564161-10564242)
chr5 (123-204)||(10741693-10741774)
chr5 (45-204)||(10610766-10610925)
[»] chr3 (1 HSPs)
chr3 (27-147)||(31468213-31468333)
[»] chr6 (1 HSPs)
chr6 (33-204)||(12931323-12931494)
[»] chr2 (1 HSPs)
chr2 (33-197)||(17924404-17924568)


Alignment Details
Target: chr5 (Bit Score: 172; Significance: 1e-92; HSPs: 9)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 172; E-Value: 1e-92
Query Start/End: Original strand, 17 - 204
Target Start/End: Original strand, 7192033 - 7192220
Alignment:
Q  17 catttgagtataggagataatatgttagaaggaaatattccgtcaagtataggaaactgcaaaaagttacaatacctggaccttgcacaaaacaatctta 116  Q
    ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  7192033 catttgagtgtaggagataatatgttagaaggaaatattccgtcaagtataggaaactgcaaaaagttacaatacctggaccttgcacaaaacaatctta 7192132  T
Q  117 gaagaaccataccgttagaagttttcagtctttcttcgttatcaaacttactgaacttgtcaagaaactcattgagtggtagcatacc 204  Q
    || |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  7192133 gaggaaccatacccttagaagttttcagtctttcttcgttatcaaacttactgaacttgtcaagaaactcattgagtggtagcctacc 7192220  T

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Target: chr5; HSP #2
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 19 - 204
Target Start/End: Complemental strand, 10661264 - 10661079
Alignment:
Q  19 tttgagtataggagataatatgttagaaggaaatattccgtcaagtataggaaactgcaaaaagttacaatacctggaccttgcacaaaacaatcttaga 118  Q
    |||||||||| ||||||||||||||| |||||||||||| ||||| |||||| | ||| ||||| |||||| ||| |||||| ||||||||| |||||||    
T  10661264 tttgagtataagagataatatgttaggaggaaatattccttcaagcataggacattgccaaaagctacaatccctagacctttcacaaaacattcttaga 10661165  T
Q  119 agaaccataccgttagaagttttcagtctttcttcgttatcaaacttactgaacttgtcaagaaactcattgagtggtagcatacc 204  Q
     ||||||||||   | | || || |||||||| || ||| ||||||||||||||||||||| ||||||||||||||||||| ||||    
T  10661164 ggaaccatacccaaaaaggtctttagtctttcctctttaacaaacttactgaacttgtcaaaaaactcattgagtggtagcctacc 10661079  T

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Target: chr5; HSP #3
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 27 - 204
Target Start/End: Complemental strand, 10653370 - 10653193
Alignment:
Q  27 taggagataatatgttagaaggaaatattccgtcaagtataggaaactgcaaaaagttacaatacctggaccttgcacaaaacaatcttagaagaaccat 126  Q
    |||||||||||||||| |||||||| ||||| ||||| || ||| | ||| ||||| |||||||||| |||||| ||||||||| |||  || |||||||    
T  10653370 taggagataatatgttggaaggaaacattccttcaagcattggatattgccaaaagctacaatacctagacctttcacaaaacattctccgaggaaccat 10653271  T
Q  127 accgttagaagttttcagtctttcttcgttatcaaacttactgaacttgtcaagaaactcattgagtggtagcatacc 204  Q
    |||  |||| ||||| |||||||| ||  || ||||| ||||||| |||||||  ||| |||||||||||||| ||||    
T  10653270 acccatagaggttttaagtctttcctccctaacaaacatactgaatttgtcaaataacacattgagtggtagcttacc 10653193  T

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Target: chr5; HSP #4
Raw Score: 49; E-Value: 3e-19
Query Start/End: Original strand, 35 - 195
Target Start/End: Complemental strand, 19607028 - 19606868
Alignment:
Q  35 aatatgttagaaggaaatattccgtcaagtataggaaactgcaaaaagttacaatacctggaccttgcacaaaacaatcttagaagaaccataccgttag 134  Q
    |||||| || ||||||||||||| ||||| |||||||||||  |||||||||||| | | | ||||   ||||| ||||||||  |||||||||| ||||    
T  19607028 aatatgctacaaggaaatattccttcaagcataggaaactgtcaaaagttacaatccatagtcctttttcaaaataatcttagtggaaccatacccttag 19606929  T
Q  135 aagttttcagtctttcttcgttatcaaacttactgaacttgtcaagaaactcattgagtgg 195  Q
    | |||||  ||||||| || |||||||  |||||| | ||||||| ||||||||| |||||    
T  19606928 aggtttttcgtctttcctctttatcaatattactggatttgtcaaaaaactcattcagtgg 19606868  T

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Target: chr5; HSP #5
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 18 - 195
Target Start/End: Original strand, 10557949 - 10558126
Alignment:
Q  18 atttgagtataggagataatatgttagaaggaaatattccgtcaagtataggaaactgcaaaaagttacaatacctggaccttgcacaaaacaatcttag 117  Q
    |||||||| ||| | |||||||||||| ||||||||||||  ||||  | ||||| ||  | || |||||  ||||  ||||| || |||| ||| ||||    
T  10557949 atttgagtctagcacataatatgttaggaggaaatattcccccaagcttcggaaattgtcacaatttacatcacctaaacctttcaaaaaataattttag 10558048  T
Q  118 aagaaccataccgttagaagttttcagtctttcttcgttatcaaacttactgaacttgtcaagaaactcattgagtgg 195  Q
    | |||||||||| || || ||||| ||| |||| || |||||||||| |||| ||||||||  |||||||||||||||    
T  10558049 aggaaccatacccttggaggtttttagtatttcctcattatcaaactcactggacttgtcacaaaactcattgagtgg 10558126  T

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Target: chr5; HSP #6
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 35 - 204
Target Start/End: Original strand, 10603798 - 10603967
Alignment:
Q  35 aatatgttagaaggaaatattccgtcaagtataggaaactgcaaaaagttacaatacctggaccttgcacaaaacaatcttagaagaaccataccgttag 134  Q
    ||||| |||||||| | ||||||  ||| ||||||||| ||  |||||||||||||||| ||| || |||||||||| |||||| |  ||||||| ||||    
T  10603798 aatatattagaagggagtattcctccaaatataggaaattgtcaaaagttacaatacctagacttttcacaaaacaaccttagagggtccatacctttag 10603897  T
Q  135 aagttttcagtctttcttcgttatcaaacttactgaacttgtcaagaaactcattgagtggtagcatacc 204  Q
    |  |||| ||| |||| || ||  |||| |||||  |||||||| |||||  ||||||||||||| ||||    
T  10603898 atatttttagtatttcctctttgacaaatttacttgacttgtcacgaaacaaattgagtggtagcttacc 10603967  T

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Target: chr5; HSP #7
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 123 - 204
Target Start/End: Original strand, 10564161 - 10564242
Alignment:
Q  123 ccataccgttagaagttttcagtctttcttcgttatcaaacttactgaacttgtcaagaaactcattgagtggtagcatacc 204  Q
    |||||||  |||| ||||| ||||||||||| ||| |||||||| |||||||||||   ||||| |||||||||||| ||||    
T  10564161 ccatacctctagaggtttttagtctttcttctttaacaaacttattgaacttgtcacataactctttgagtggtagcttacc 10564242  T

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Target: chr5; HSP #8
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 123 - 204
Target Start/End: Complemental strand, 10741774 - 10741693
Alignment:
Q  123 ccataccgttagaagttttcagtctttcttcgttatcaaacttactgaacttgtcaagaaactcattgagtggtagcatacc 204  Q
    |||||||  |||| ||||| ||||||||||| |||||||||||| || ||||||||   ||| | |||||||||||||||||    
T  10741774 ccatacctctagaggtttttagtctttcttctttatcaaacttattggacttgtcacataacactttgagtggtagcatacc 10741693  T

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Target: chr5; HSP #9
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 45 - 204
Target Start/End: Original strand, 10610766 - 10610925
Alignment:
Q  45 aaggaaatattccgtcaagtataggaaactgcaaaaagttacaatacctggaccttgcacaaaacaatcttagaagaaccataccgttagaagttttcag 144  Q
    |||||||||||||  |||| |||||||| ||  |||||||||||||||| || ||| | || || || |||||  || ||||||| |||||  |||| |     
T  10610766 aaggaaatattcctccaagcataggaaattgtcaaaagttacaatacctagatctttctcataataaacttagtggatccatacctttagagatttttaa 10610865  T
Q  145 tctttcttcgttatcaaacttactgaacttgtcaagaaactcattgagtggtagcatacc 204  Q
    ||||| ||  |||||||| ||| ||||||||||    ||||| |||||||||||| ||||    
T  10610866 tcttttttatttatcaaatttattgaacttgtcgcataactctttgagtggtagcttacc 10610925  T

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Target: chr3 (Bit Score: 49; Significance: 3e-19; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 49; E-Value: 3e-19
Query Start/End: Original strand, 27 - 147
Target Start/End: Complemental strand, 31468333 - 31468213
Alignment:
Q  27 taggagataatatgttagaaggaaatattccgtcaagtataggaaactgcaaaaagttacaatacctggaccttgcacaaaacaatcttagaagaaccat 126  Q
    |||||||||| || |||||||||||||||||   ||| |||||||||||| |||||||| |  || | |||||| | ||||||||||||||| |||||||    
T  31468333 taggagataacatattagaaggaaatattcctctaagcataggaaactgccaaaagttatatcacttagacctttcgcaaaacaatcttagaggaaccat 31468234  T
Q  127 accgttagaagttttcagtct 147  Q
    |||| |||| ||||| |||||    
T  31468233 accgatagaggtttttagtct 31468213  T

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Target: chr6 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 33 - 204
Target Start/End: Original strand, 12931323 - 12931494
Alignment:
Q  33 ataatatgttagaaggaaatattccgtcaagtataggaaactgcaaaaagttacaatacctggaccttgcacaaaacaatcttagaagaaccataccgtt 132  Q
    ||||||||||  |||||| ||||||  |||| |||||||||||  |||| |||||||  || || ||| | || || || |||||| ||||||||||  |    
T  12931323 ataatatgtttcaaggaagtattcctccaagcataggaaactgtcaaaatttacaatctcttgatctttctcataataagcttagaggaaccatacctgt 12931422  T
Q  133 agaagttttcagtctttcttcgttatcaaacttactgaacttgtcaagaaactcattgagtggtagcatacc 204  Q
    ||| ||||| | ||||| ||| ||||||| |||| |||||||||||   ||||| || ||||||||| ||||    
T  12931423 agaggttttaaatcttttttctttatcaatcttattgaacttgtcacataactctttaagtggtagcttacc 12931494  T

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Target: chr2 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 33 - 197
Target Start/End: Complemental strand, 17924568 - 17924404
Alignment:
Q  33 ataatatgttagaaggaaatattccgtcaagtataggaaactgcaaaaagttacaatacctggaccttgcacaaaacaatcttagaagaaccataccgtt 132  Q
    ||||||||||  |||||| ||||||  ||||  ||||||||||  |||| |||||||| || || ||  | || || || |||||| ||||||||||  |    
T  17924568 ataatatgtttcaaggaattattcctccaagcttaggaaactgtcaaaatttacaatatctagatctgtctcataataagcttagaggaaccatacctgt 17924469  T
Q  133 agaagttttcagtctttcttcgttatcaaacttactgaacttgtcaagaaactcattgagtggta 197  Q
    ||| ||||| | ||||| ||| ||||||| |||| |||||||||||   ||||| ||||||||||    
T  17924468 agaggttttaaatcttttttctttatcaatcttattgaacttgtcacataactctttgagtggta 17924404  T

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