View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15955_low_1 (Length: 1008)
Name: NF15955_low_1
Description: NF15955
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15955_low_1 |
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Alignment Details
Target: chr7 (Bit Score: 413; Significance: 0; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 413; E-Value: 0
Query Start/End: Original strand, 18 - 450
Target Start/End: Complemental strand, 25881891 - 25881459
Alignment:
| Q |
18 |
gtgaacagtttccaatcgactgaggaatgtttccggcgagtgaattgtcagagaggtcaagattttgaagacgaggaaggttacacgccgacggggagag |
117 |
Q |
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| T |
25881891 |
gtgaacagtttccgatcgactgaggaatgtttccggcgagtgaattgtcagagaggtcaagattttgaagacgaggaaggttacacgccgacggggagag |
25881792 |
T |
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| Q |
118 |
attaccggagagattgtttccgtggaggaagatgctgtgaagggaactagcattgaagagctgaacgggaatggagccatggaagaggttagtatggagg |
217 |
Q |
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| T |
25881791 |
attaccggagagattgtttccatggaggaagatgctgtgaagggaactagcattgaagagctgaacgggaatggagccatggaagaggttagtatggagg |
25881692 |
T |
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| Q |
218 |
ctaagacgacggaggtagataaggtttccgagctccgacgggagataaccacggaggccttttccggcgagtccaataccgacgacacgggagtcaggct |
317 |
Q |
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| T |
25881691 |
ctaagacgacggaggtagataaggtttccgagctccgacgggagataaccacggagaccttttccggcgagtccaataccgacgacacgggagtcaggct |
25881592 |
T |
|
| Q |
318 |
ccccggagatgttggagcagctaatgccggaccagtgacagggtgtaaggtcgttttcgttccagtcggagaatgtagttgcggtgtcgccgccgtcgac |
417 |
Q |
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| T |
25881591 |
ccccggagatgttggagcagctaatgccggaccagtgacagggtgtaaggtcgttttcgttccagtcggagaatgtagttgcggtgtcaccgccgtcgac |
25881492 |
T |
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| Q |
418 |
ggcggatttgagtgtcagaagagcgaggccgtc |
450 |
Q |
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| T |
25881491 |
ggcggatttgagtgttagaagagcgaggccgtc |
25881459 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 335; E-Value: 0
Query Start/End: Original strand, 614 - 994
Target Start/End: Complemental strand, 25881310 - 25880939
Alignment:
| Q |
614 |
ttgaatatgaggatgaggattgagaaagtgaagtaggtttgtatttatttatgaagagaaatatcaatactatagggaagatgagattttaatttggtgg |
713 |
Q |
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| T |
25881310 |
ttgaatatgaggatgaggattgagaaagtgaagtaggtttgtatttatttatgaagagaaatatcaatactatggggaagatgagattttaatttggtgg |
25881211 |
T |
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| Q |
714 |
ggtccatttggcgccaaaaagatgattgattttgttaatgaaaagagtggagtgaaagagaagtaacatgatattgtaataatgtctgtatttggataca |
813 |
Q |
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| T |
25881210 |
ggtccatttggcgccaaaaagatgattgattttgttaatgaaaagagtggagtgaaagagaagtaacatgatattgtaataatgtctgtatttggataca |
25881111 |
T |
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| Q |
814 |
atacaacatgaaattggatcaatggatttggaaattatgttgagtttctaatgttgaaatgattgtttatgattgtgctcaacagtgaagtta-gttata |
912 |
Q |
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| T |
25881110 |
atacaacatgaaattggatcaatggatttggaaattatgttgagtttctaatgttgaaatga----------ttgtgctcaacagtgaagttaggttata |
25881021 |
T |
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| Q |
913 |
acatgatcattttagaagtgaagagtgttcggtcggattctttattttgactaaattgtttgtgaatggtacttgagtgatg |
994 |
Q |
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| T |
25881020 |
acatgatcattttagaagtgaagagtgttcggtcggattctttattttgactaaattgtttgtgaatggtacttgagtgatg |
25880939 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 52; E-Value: 3e-20
Query Start/End: Original strand, 510 - 586
Target Start/End: Complemental strand, 25881399 - 25881313
Alignment:
| Q |
510 |
taatttgcatttagaatttgaagtacgacgccgttttgggtt----------gagttaagtacggtacggtgagttcagttgagttc |
586 |
Q |
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| T |
25881399 |
taatttgcatttagaatttgaagtacgacgccgttttgggttgtgttggttagagttaagtacggtacggtgagttcagttgagttc |
25881313 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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