View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15955_low_4 (Length: 465)
Name: NF15955_low_4
Description: NF15955
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15955_low_4 |
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| [»] scaffold0079 (1 HSPs) |
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| [»] scaffold0017 (1 HSPs) |
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Alignment Details
Target: scaffold0079 (Bit Score: 402; Significance: 0; HSPs: 1)
Name: scaffold0079
Description:
Target: scaffold0079; HSP #1
Raw Score: 402; E-Value: 0
Query Start/End: Original strand, 18 - 455
Target Start/End: Original strand, 47419 - 47850
Alignment:
| Q |
18 |
gatggaaccaaaagcctccccccatgcatgaatcatagctagctctaggtggtgagcagcatttttattcaaattatgatacacaaaatggagtatttgc |
117 |
Q |
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||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
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| T |
47419 |
gatggaaccaaaagcctccccccatgcatgaatcacagctagctctaggtggtgagcagcatttttattcaaattatgatacacaaaa-ggagtatttgc |
47517 |
T |
|
| Q |
118 |
cttagctaacaaaacaaaactccaagtaaagccacacaacacaacacatacgaaatcatcatcatcgtcgtcataaaaccaacaaactcatcatcttcca |
217 |
Q |
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||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
47518 |
cttagctaaca-----aaactccaagtaaagccacacaacacaacacatacgaaatcatcatcatcgtcgtcataaaaccaacaaactcatcatcttcca |
47612 |
T |
|
| Q |
218 |
tgaatttagattgggaatgcctcaatgatgcatggcagagcattgattttgatgatgttgtaacgagggaatcctgtctcgttgaataggtatttccagt |
317 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
47613 |
tgaatttagattgggaatgcctcaatgatgcatggcagagcattgattttgatgatgttgtaacgagggaatcctgtctcgttgaataggtatttccagt |
47712 |
T |
|
| Q |
318 |
tctcttcagttctttctttaccaccagcattgtgagcaagcaacatcatgtcaaatgctatcccagtgtcggtaaatggttcgtttccttctgggtccaa |
417 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
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| T |
47713 |
tctcttcagttctttctttaccaccagcattgtgagcaagcaacatcatgtcaaatgctatcccagtgtcggtaaatggttcatttccttctgggtccaa |
47812 |
T |
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| Q |
418 |
tacatgatccacaatgatcacctttcctgttttctctg |
455 |
Q |
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| T |
47813 |
tacatgatccacaatgatcacctttcctgttttctctg |
47850 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 402; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 402; E-Value: 0
Query Start/End: Original strand, 18 - 455
Target Start/End: Complemental strand, 16345442 - 16345011
Alignment:
| Q |
18 |
gatggaaccaaaagcctccccccatgcatgaatcatagctagctctaggtggtgagcagcatttttattcaaattatgatacacaaaatggagtatttgc |
117 |
Q |
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||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
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| T |
16345442 |
gatggaaccaaaagcctccccccatgcatgaatcacagctagctctaggtggtgagcagcatttttattcaaattatgatacacaaaa-ggagtatttgc |
16345344 |
T |
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| Q |
118 |
cttagctaacaaaacaaaactccaagtaaagccacacaacacaacacatacgaaatcatcatcatcgtcgtcataaaaccaacaaactcatcatcttcca |
217 |
Q |
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||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
16345343 |
cttagctaacaaaac-----tccaagtaaagccacacaacacaacacatacgaaatcatcatcatcgtcgtcataaaaccaacaaactcatcatcttcca |
16345249 |
T |
|
| Q |
218 |
tgaatttagattgggaatgcctcaatgatgcatggcagagcattgattttgatgatgttgtaacgagggaatcctgtctcgttgaataggtatttccagt |
317 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
16345248 |
tgaatttagattgggaatgcctcaatgatgcatggcagagcattgattttgatgatgttgtaacgagggaatcctgtctcgttgaataggtatttccagt |
16345149 |
T |
|
| Q |
318 |
tctcttcagttctttctttaccaccagcattgtgagcaagcaacatcatgtcaaatgctatcccagtgtcggtaaatggttcgtttccttctgggtccaa |
417 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
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| T |
16345148 |
tctcttcagttctttctttaccaccagcattgtgagcaagcaacatcatgtcaaatgctatcccagtgtcggtaaatggttcatttccttctgggtccaa |
16345049 |
T |
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| Q |
418 |
tacatgatccacaatgatcacctttcctgttttctctg |
455 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||| |
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| T |
16345048 |
tacatgatccacaatgatcacctttcctgttttctctg |
16345011 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0017 (Bit Score: 233; Significance: 1e-128; HSPs: 1)
Name: scaffold0017
Description:
Target: scaffold0017; HSP #1
Raw Score: 233; E-Value: 1e-128
Query Start/End: Original strand, 38 - 453
Target Start/End: Complemental strand, 36602 - 36190
Alignment:
| Q |
38 |
cccatgcatgaatcatagctagctctaggtggtgagcagcatttttattcaaattatgatacacaaaatggagtatttgccttagctaacaaaacaaaac |
137 |
Q |
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||||||||||||||||| | ||||| || ||||||| |||||||||||||||||||||||| ||||||||| |||||| |||||||||||||||||| |
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| T |
36602 |
cccatgcatgaatcatacc-agctccagagcgtgagcaacatttttattcaaattatgataca--aaatggagtgtttgccatagctaacaaaacaaaac |
36506 |
T |
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| Q |
138 |
tccaagtaaagccacacaacacaacacatacgaaatcatcatcatcgtcgtcataaaaccaacaaactcatcatcttccatgaatttagattgggaatgc |
237 |
Q |
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||||||||||||||||||||||||||||||||||||||||| |||| || ||||||||||||||||||||| || | ||||||||||||||| ||||| |
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|
| T |
36505 |
tccaagtaaagccacacaacacaacacatacgaaatcatcaccatcatcatcataaaaccaacaaactcattatgatttatgaatttagattggaaatgc |
36406 |
T |
|
| Q |
238 |
ctcaatgatgcatggcagagcattgattttgatgatgttgtaacgagggaatcctgtctcgttgaataggtatttccagttctcttcagttctttcttta |
337 |
Q |
| |
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||||||||| || ||| |||||||||||||||||||||||||||||||||||| ||||| ||||||| ||||||||||||||||||||| ||||| ||| |
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| T |
36405 |
ttcaatgatggatagcaaagcattgattttgatgatgttgtaacgagggaatcccgtctctttgaataagtatttccagttctcttcagtcctttcctta |
36306 |
T |
|
| Q |
338 |
ccaccagcattgtgagcaagcaacatcatgtcaaatgctatcccagtgtcggtaaatggttcgtttccttctgggtccaatacatgatccacaatgatca |
437 |
Q |
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||||||| ||||| |||| ||| ||||||||||||||||| ||| | || ||||||||||| | |||||||||||||||||||||||||| || |||| |
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| T |
36305 |
ccaccagagttgtgtgcaaacaatatcatgtcaaatgctatgccaatatcagtaaatggttcatctccttctgggtccaatacatgatccaatattatca |
36206 |
T |
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| Q |
438 |
cctttcctgttttctc |
453 |
Q |
| |
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||||||| |||||||| |
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|
| T |
36205 |
cctttccagttttctc |
36190 |
T |
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