View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15955_low_6 (Length: 273)
Name: NF15955_low_6
Description: NF15955
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15955_low_6 |
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| [»] chr4 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 226; Significance: 1e-124; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 226; E-Value: 1e-124
Query Start/End: Original strand, 20 - 273
Target Start/End: Complemental strand, 26829244 - 26828991
Alignment:
| Q |
20 |
catcgataattgctccaaactcgaagatatcgttacttcctttactgtaatagtctacaaccttcttggcacatccaatttgaaatccacacttgttagt |
119 |
Q |
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| T |
26829244 |
catcgataattgctccaaactcgaagatatcgttacttcctttactgtaatagtctacaaccttcttggcacatccaatttgaaatccacacttgttagt |
26829145 |
T |
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| Q |
120 |
tgtagactccccacccaatgcatagtatacggcaaccccatagcttttcctaagtccgacgaacacgagattagaccacaaagttttagccataacaaag |
219 |
Q |
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| T |
26829144 |
tgtagactccccacccaatgcatagtatacggcaaccccatagcttttcctaagtccgacgaacacgagattagaccacaaaattttagtcataataaag |
26829045 |
T |
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| Q |
220 |
ttcttggaagcatctcgaatacacataacgaatccgacacatttcaacgccaac |
273 |
Q |
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|||| |||| |||| |||||||||||| |||||||||||||||||||||||||| |
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| T |
26829044 |
ttctcggaaacatcgcgaatacacataccgaatccgacacatttcaacgccaac |
26828991 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 34; Significance: 0.0000000004; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 24 - 144
Target Start/End: Complemental strand, 13925772 - 13925654
Alignment:
| Q |
24 |
gataattgctccaaactcgaagatatcgttacttcctttactgtaatagtctacaaccttcttggcacatccaatttgaaatccacacttgttagttgta |
123 |
Q |
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| T |
13925772 |
gataattgctccaaactcggagatgtcattgcttcctctattataataatctacaaccttctttg--catctaattcaaagtccacatttgtaagttgta |
13925675 |
T |
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| Q |
124 |
gactccccacccaatgcatag |
144 |
Q |
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| T |
13925674 |
gattgcgcacccaatgaatag |
13925654 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 34; Significance: 0.0000000004; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 24 - 144
Target Start/End: Complemental strand, 12204908 - 12204790
Alignment:
| Q |
24 |
gataattgctccaaactcgaagatatcgttacttcctttactgtaatagtctacaaccttcttggcacatccaatttgaaatccacacttgttagttgta |
123 |
Q |
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||||||||||||||||||| |||| || || |||||| || | ||||| |||||||||||||| | |||| |||| || |||||| |||| ||||||| |
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| T |
12204908 |
gataattgctccaaactcggagatgtcattgcttcctctattataataatctacaaccttctttg--catctaattcaaagtccacatttgtaagttgta |
12204811 |
T |
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| Q |
124 |
gactccccacccaatgcatag |
144 |
Q |
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|| | | ||||||||| |||| |
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| T |
12204810 |
gattgcgcacccaatgaatag |
12204790 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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