View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15955_low_7 (Length: 251)
Name: NF15955_low_7
Description: NF15955
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15955_low_7 |
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Alignment Details
Target: chr1 (Bit Score: 138; Significance: 3e-72; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 138; E-Value: 3e-72
Query Start/End: Original strand, 17 - 232
Target Start/End: Complemental strand, 33139133 - 33138921
Alignment:
| Q |
17 |
agattctgtgacaatagccagaaatctccatactcaagagcaaaagcagaaagagtaagcactccttttgcaacccatgaatagtttgacaactttttta |
116 |
Q |
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| T |
33139133 |
agattctgtgataacagccagaactctccatactcaagggaaaaagcagaaagagtaagcactccttttgcaacccatgaatagtttgacagctttttta |
33139034 |
T |
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| Q |
117 |
ggattgctaatgttgttttgtaagctatttcctcacctggtgccttgcatgacatctgccatcattatacaatataaatgtactattagttattttatac |
216 |
Q |
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| T |
33139033 |
ggattgctagtgttgttttgtatgctatttcctcacctggtgctttgcatgacatctgccatattcataaaatataaatg---tatcagttattttaaac |
33138937 |
T |
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| Q |
217 |
tataaagtttaaataa |
232 |
Q |
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||||||||||| |||| |
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| T |
33138936 |
tataaagtttacataa |
33138921 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 95; E-Value: 1e-46
Query Start/End: Original strand, 32 - 190
Target Start/End: Complemental strand, 33180358 - 33180200
Alignment:
| Q |
32 |
agccagaaatctccatactcaagagcaaaagcagaaagagtaagcactccttttgcaacccatgaatagtttgacaacttttttaggattgctaatgttg |
131 |
Q |
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| T |
33180358 |
agccagaagtcaccatattcaagagcaaaagcagaaagagtgagaactccttttgcaacccatgaatagtttgacagcttgttcaagattgctagtgttg |
33180259 |
T |
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| Q |
132 |
ttttgtaagctatttcctcacctggtgccttgcatgacatctgccatcattatacaata |
190 |
Q |
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| T |
33180258 |
ttttgtatgcaatttcctcacctggagccttgcatgccatctgccaccatcatacaata |
33180200 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 91; E-Value: 3e-44
Query Start/End: Original strand, 32 - 190
Target Start/End: Complemental strand, 33157543 - 33157385
Alignment:
| Q |
32 |
agccagaaatctccatactcaagagcaaaagcagaaagagtaagcactccttttgcaacccatgaatagtttgacaacttttttaggattgctaatgttg |
131 |
Q |
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||||| || |||||||||||||||||||||||||||||||| || |||||||||||||||||||| |||||||||| ||| || |||||||||| ||||| |
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| T |
33157543 |
agccaaaactctccatactcaagagcaaaagcagaaagagtgagaactccttttgcaacccatgagtagtttgacagcttgttcaggattgctagtgttg |
33157444 |
T |
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| Q |
132 |
ttttgtaagctatttcctcacctggtgccttgcatgacatctgccatcattatacaata |
190 |
Q |
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|| |||| || |||||||||||||| |||||||||| ||||| | | |||||||||||| |
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| T |
33157443 |
ttctgtatgcaatttcctcacctggggccttgcatgccatctacaaccattatacaata |
33157385 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 34 - 175
Target Start/End: Original strand, 33289742 - 33289883
Alignment:
| Q |
34 |
ccagaaatctccatactcaagagcaaaagcagaaagagtaagcactccttttgcaacccatgaatagtttgacaacttttttaggattgctaatgttgtt |
133 |
Q |
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|||||| || ||||| |||| |||||||||||||||||| |||||||||||| |||||||| ||| |||||| | |||||| ||||||| || ||||||| |
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| T |
33289742 |
ccagaactcaccatattcaatagcaaaagcagaaagagttagcactcctttttcaacccataaattgtttgagagctttttcaggattgttagtgttgtt |
33289841 |
T |
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| Q |
134 |
ttgtaagctatttcctcacctggtgccttgcatgacatctgc |
175 |
Q |
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| T |
33289842 |
tcgtaagcaattttctcacccggagccttgcatgacatctgc |
33289883 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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