View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15956_high_1 (Length: 315)
Name: NF15956_high_1
Description: NF15956
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15956_high_1 |
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Alignment Details
Target: chr1 (Bit Score: 237; Significance: 1e-131; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 237; E-Value: 1e-131
Query Start/End: Original strand, 8 - 299
Target Start/End: Original strand, 6594017 - 6594299
Alignment:
| Q |
8 |
cactcaatttcacatgttgttagagtggtttcaatacatactaatcacataaattgtccacgttgattcgttcatataatactttaatactttaaacagt |
107 |
Q |
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| T |
6594017 |
cactcaatttcacatgttgttagagtggtttcaatacatattaatcacataaattgtccacgttgattcgttcatataatactttaa--------acagt |
6594108 |
T |
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| Q |
108 |
taacaaatattgaatcgtatgatatagtgttagggttacgaaaacacctacatagtaa-ggataaaataaaacaactccataataatacttgaccaaaga |
206 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
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| T |
6594109 |
taacaaatattgaatcgtatgatatagtgttagggttacgaaaacacctacatagtaaaggataaaataaaacaactccataataatacttgaccaaaga |
6594208 |
T |
|
| Q |
207 |
cagcaatatgacataatacatgttcttgatcaaccagtgttcatgcgatatttacagtaacaataagaatgatgaaattaacaacacaagtat |
299 |
Q |
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||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
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| T |
6594209 |
cagcaat--gacataatacatgttcttgatcaaccagtgttcatgcgatatttacagtaacaataagaatgatcaaattaacaacacaagtat |
6594299 |
T |
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