View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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	Query
	Query hiting target	Query hiting target's complemental strand
	Query's complemental strand hiting target	Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF15956_high_13 (Length: 314)

Name: NF15956_high_13

Description: NF15956

Algorithm: BLASTN 2.2.26 [Sep-21-2011]

Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)

[»] NF15956_high_13

[»] chr3 (6 HSPs)

Alignment Details

Target: chr3 (Bit Score: 169; Significance: 1e-90; HSPs: 6)

Name: chr3

Description:

Target: chr3; HSP #1

Raw Score: 169; E-Value: 1e-90

Query Start/End: Original strand, 57 - 314

Target Start/End: Complemental strand, 19386462 - 19386200

Alignment:

Q	57	agtgatatgtaaagcaattaatttccttcaagtattttattttcccttccaattagctannnnnnnnnnn-----cttttcaatttcttgtatgtgggtt	151	Q
		\|\|\|\| \|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\| \|\|\| \|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|
T	19386462	agtggtatgtaaagcaattaatttccttcaagtattttattttcccttccaatttgcttttttttttttttttttcttttcaatttcttgtatgtgggtt	19386363	T

Q	152	taccattcaactagaaggtcctgaaatacctaataaagctgattttgaannnnnnnctttaaaaagcattatctctcttgacttggtcaaaagtaaaggc	251	Q
		\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\| \|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\| \|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|
T	19386362	taccattcaactagaaggtcctgaaatacctaataaagctgattttgaattttttcttttaaaaagcattatctctctcgacttggtcaaaagtaaaggc	19386263	T

Q	252	tataaaatttgtggcatctgagctaccttgagggtcaaagtggaaacttcactataacttaga	314	Q
		\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|
T	19386262	tataaaatttgtggcatctgagctaccttgagggtcaaagtggaaacttcactataacttaga	19386200	T

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Target: chr3; HSP #2

Raw Score: 71; E-Value: 4e-32

Query Start/End: Original strand, 130 - 292

Target Start/End: Complemental strand, 19432733 - 19432572

Alignment:

Q	130	ttcaatttcttgtatgtgggtttaccattcaactagaaggtcctgaaatacctaataaagctgattttgaannnnnnncttt-aaaaagcattatctctc	228	Q
		\|\|\|\|\|\|\|\|\|\|\|\|\| \|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\| \|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\| \|\|\|\|\|\|\|\|\|\| \|\|\|\| \|\|\|\|\|\| \|\|\|\| \|\| \|
T	19432733	ttcaatttcttgtgtgtgggtttaccattcaactagaaggacctgaaatacctaataaagttgattttgaattttcttctttaaaaaagtattaattcgc	19432634	T

Q	229	ttgacttggtcaaaagtaaaggctataaaatttgtggcatctgagctaccttgagggtcaaagt	292	Q
		\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\| \|\|\|\|\| \| \|\|\|\|\|\|\|\|\|\|\|\|\| \| \|\|\|\|\|\| \|\|\|\|\|\|\| \|\|\|\|
T	19432633	ttgacttggtcaaaagtaaa-gctat-acatttgtggcatctcaactacctggagggtctaagt	19432572	T

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Target: chr3; HSP #3

Raw Score: 52; E-Value: 8e-21

Query Start/End: Original strand, 14 - 65

Target Start/End: Complemental strand, 19386527 - 19386476

Alignment:

Q	14	agatgacttggaaaaagtagggaagactttgaattttggagttagtgatatg	65	Q
		\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|
T	19386527	agatgacttggaaaaagtagggaagactttgaattttggagttagtgatatg	19386476	T

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Target: chr3; HSP #4

Raw Score: 38; E-Value: 0.000000000002

Query Start/End: Original strand, 130 - 187

Target Start/End: Original strand, 17728856 - 17728913

Alignment:

Q	130	ttcaatttcttgtatgtgggtttaccattcaactagaaggtcctgaaatacctaataa	187	Q
		\|\|\|\|\|\|\|\|\|\|\|\|\|\|\| \|\|\|\|\|\|\| \|\|\|\|\|\|\|\|\|\|\|\| \|\| \|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|
T	17728856	ttcaatttcttgtatacgggtttatcattcaactagagggacctgaaatacctaataa	17728913	T

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Target: chr3; HSP #5

Raw Score: 38; E-Value: 0.000000000002

Query Start/End: Original strand, 130 - 187

Target Start/End: Original strand, 19030085 - 19030142

Alignment:

Q	130	ttcaatttcttgtatgtgggtttaccattcaactagaaggtcctgaaatacctaataa	187	Q
		\|\|\|\|\|\|\|\|\|\|\|\|\|\|\| \|\|\|\|\|\|\| \|\|\|\|\|\|\|\|\|\|\|\| \|\| \|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|
T	19030085	ttcaatttcttgtatacgggtttatcattcaactagagggacctgaaatacctaataa	19030142	T

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Target: chr3; HSP #6

Raw Score: 38; E-Value: 0.000000000002

Query Start/End: Original strand, 14 - 63

Target Start/End: Complemental strand, 19387085 - 19387036

Alignment:

Q	14	agatgacttggaaaaagtagggaagactttgaattttggagttagtgata	63	Q
		\|\|\|\|\|\|\|\|\| \|\|\|\|\|\|\| \|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\| \|\|\|\|\|\|\|
T	19387085	agatgacttagaaaaagcagggaagactttgaattttggagtaagtgata	19387036	T

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