View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15956_high_1_N (Length: 383)
Name: NF15956_high_1_N
Description: NF15956
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15956_high_1_N |
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| [»] chr3 (2 HSPs) |
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| [»] chr2 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 340; Significance: 0; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 340; E-Value: 0
Query Start/End: Original strand, 16 - 383
Target Start/End: Complemental strand, 11119817 - 11119450
Alignment:
| Q |
16 |
atggatgatacttttgatgaagggttagtaaggttatggtggaaacatgagagtggttcattggatgaagaccttaagccattcaggaatgatactgatg |
115 |
Q |
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| T |
11119817 |
atggatgatacttttgatgaagggttagtaaggttatggtggaaacatgagagtggttcattggatgaagacctcaagccattcagtaatgatactgatg |
11119718 |
T |
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| Q |
116 |
caactacaatgtctaattatgctcgtgataagaagtgtgatgttgaattgtatgttgaacctaaggtgaatttaggaaatgctataaatgttgttgatgt |
215 |
Q |
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| T |
11119717 |
caactgcaatgtctaattatgctcgtgataagaagtgtgatgttgaattgtatgttgaacctaaggtgaatttaggaaatggtataaatgttgctgattt |
11119618 |
T |
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| Q |
216 |
tatcggggaacgaaagggaaagggtgtagtggcggatgaagttgaaggcaatgttggtgaagcagacaatgatgatggagatgttagtagtgatgatggt |
315 |
Q |
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| T |
11119617 |
tatcggggaacgaaagggaaagggtgtagtggcggatgaagttgaaggcaatgttggtgaagcagacaacgatgatggagatgttagtagtgatgatggt |
11119518 |
T |
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| Q |
316 |
gattcaatcaaaggcacacactttaatgacagtgaagaagagaggatggctggggttgatgataggtt |
383 |
Q |
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| T |
11119517 |
gattcaatcaaaggcacacactttaatgacagtgaagaagagaggatggctggggttgatgataggtt |
11119450 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 253; E-Value: 1e-140
Query Start/End: Original strand, 19 - 372
Target Start/End: Complemental strand, 12206311 - 12205970
Alignment:
| Q |
19 |
gatgatacttttgatgaagggttagtaaggttatggtggaaacatgagagtggttcattggatgaagaccttaagccattcaggaatgatactgatgcaa |
118 |
Q |
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| T |
12206311 |
gatgatacttttgatgaagggttagtaaggttatggtggaaacatgagagtggttcattggatgaagacgtcaagccaatcaggaatgatactgatgcaa |
12206212 |
T |
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| Q |
119 |
ctacaatgtctaattatgctcgtgataagaagtgtgatgttgaattgtatgttgaacctaaggtgaatttaggaaatgctataaatgttgttgatgttat |
218 |
Q |
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| T |
12206211 |
ccttaatgtctgattatgctcgtgataagaactgtgatgttgaa------------cctaaggtgaatttaggaaatgctataaatgttgctgatgttat |
12206124 |
T |
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| Q |
219 |
cggggaacgaaagggaaagggtgtagtggcggatgaagttgaaggcaatgttggtgaagcagacaatgatgatggagatgttagtagtgatgatggtgat |
318 |
Q |
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| T |
12206123 |
cggggaacgaaagggaaagggtgtagtggcggattaagttgaaggcaatgttggtgaagcagacagtgatgatgaagatgttagtagtgatgatggtgat |
12206024 |
T |
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| Q |
319 |
tcaatcaaaggcacacactttaatgacagtgaagaagagaggatggctggggtt |
372 |
Q |
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| T |
12206023 |
tcaattaaaggcgcacactttaatgatagtgaagaagagaggatggctggggtt |
12205970 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 260; Significance: 1e-145; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 260; E-Value: 1e-145
Query Start/End: Original strand, 16 - 383
Target Start/End: Complemental strand, 32741521 - 32741154
Alignment:
| Q |
16 |
atggatgatacttttgatgaagggttagtaaggttatggtggaaacatgagagtggttcattggatgaagaccttaagccattcaggaatgatactgatg |
115 |
Q |
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| T |
32741521 |
atggatgatacttttgatgaatagttagtaaagctatggtggaaacatgagagtggttcattggatgaagacctcaagccattcaggaatgatactgatg |
32741422 |
T |
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| Q |
116 |
caactacaatgtctaattatgctcgtgataagaagtgtgatgttgaattgtatgttgaacctaaggtgaatttaggaaatgctataaatgttgttgatgt |
215 |
Q |
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| T |
32741421 |
caactgcaatgtctgattatgctcgtgataacaagtgcgatgttgaattgtatgttgaacctaaggtgaatttaggaaatgctataattgttgctgatgt |
32741322 |
T |
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| Q |
216 |
tatcggggaacgaaagggaaagggtgtagtggcggatgaagttgaaggcaatgttggtgaagcagacaatgatgatggagatgttagtagtgatgatggt |
315 |
Q |
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| T |
32741321 |
tattggggaacaaaagggaaagggtgtagtggcggatgaaattgaaggcgatgttggtgaagtagacatcgatggtggagatgttagtagtgatgatggt |
32741222 |
T |
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| Q |
316 |
gattcaatcaaaggcacacactttaatgacagtgaagaagagaggatggctggggttgatgataggtt |
383 |
Q |
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| T |
32741221 |
gatttaattaaaggcacacgctttgatgatagtgaagaagagaagatggctgcggttgatgatgggtt |
32741154 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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