View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15956_high_5 (Length: 346)
Name: NF15956_high_5
Description: NF15956
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15956_high_5 |
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Alignment Details
Target: chr7 (Bit Score: 234; Significance: 1e-129; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 234; E-Value: 1e-129
Query Start/End: Original strand, 92 - 337
Target Start/End: Original strand, 17875621 - 17875866
Alignment:
| Q |
92 |
aggggggaccttgttgatgttatggatgaaagtgtctccatccatggtagatgaacttccaatattgttaatcatgtggctacaaatatacaaaatcaaa |
191 |
Q |
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| T |
17875621 |
aggggggaccttgttgatgttatggatgaaagtgtctacatccatggtagatgaacttccaatattgttaatcatgtggctacaaatatacaaaatcaaa |
17875720 |
T |
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| Q |
192 |
ggagcattgaaaccttcaccaattgctccaatggtacctaaaatcataaggaaccaatcttccccatcagcatgcatgaaaatggacctaatagacccat |
291 |
Q |
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| T |
17875721 |
ggagcgttgaaaccttcaccaattgctccaatggtacctaaaatcataaggaaccaatcttccccatcagcatgcatgaaaatggacctaatagacccat |
17875820 |
T |
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| Q |
292 |
tcatgttcttattttcattcataacaatatttttacccatattctt |
337 |
Q |
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| T |
17875821 |
tcatgttcttattttcattcataacaatatttttacccattttctt |
17875866 |
T |
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Target: chr6 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 256 - 292
Target Start/End: Original strand, 2679882 - 2679918
Alignment:
| Q |
256 |
catcagcatgcatgaaaatggacctaatagacccatt |
292 |
Q |
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| T |
2679882 |
catcagcatgcatgaaaatggacctaaaagaaccatt |
2679918 |
T |
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