View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15956_high_9 (Length: 332)
Name: NF15956_high_9
Description: NF15956
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15956_high_9 |
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| [»] chr6 (1 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 252; Significance: 1e-140; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 252; E-Value: 1e-140
Query Start/End: Original strand, 13 - 332
Target Start/End: Original strand, 14545658 - 14545978
Alignment:
| Q |
13 |
aaaatcaaaaaacagaaccacactgttaaaccaaattgcaccaaaaacaactgaactgaaccaaactgctttagttcaactcgtaaactgtcggccacaa |
112 |
Q |
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| T |
14545658 |
aaaatcaaaaaacagaaccacactgttaaaccaaactgcaccaaaaacaactgaagtgaaccaaactgctttagttcaactcgtaaactgtcggccacaa |
14545757 |
T |
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| Q |
113 |
tttggnnnnnnnaacaaccctaattataaagacaaaaataaaagaagttgagggttcaatctttacttccagcatagtactaacaattactagctgtaac |
212 |
Q |
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| T |
14545758 |
tttggtttttttaacaaccctaattataacgacaaaaataaaagaagttgagggttcaatctttacttccagcacagtactaacaattactagctgtaac |
14545857 |
T |
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| Q |
213 |
attaaccataacattgaccgtttcaaatgaaat-nnnnnnnntaaaggctatatagtcaatgtgcaagctttgcttaaattctagtaggttacatgttgc |
311 |
Q |
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||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
14545858 |
attaaccataacattgaccgtttcaaatgaaataaacaaaaataaaggctatatagtcaatgtgcaagctttgcttaaattctagtaggttacatgttgc |
14545957 |
T |
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| Q |
312 |
aaaagtagtatagcttatgac |
332 |
Q |
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||||||||||||||||||||| |
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| T |
14545958 |
aaaagtagtatagcttatgac |
14545978 |
T |
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