View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF15957_low_1 (Length: 797)

Name: NF15957_low_1
Description: NF15957
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF15957_low_1
NF15957_low_1
[»] chr2 (5 HSPs)
chr2 (357-786)||(1614879-1615302)
chr2 (15-285)||(1615407-1615675)
chr2 (405-782)||(24455839-24456209)
chr2 (42-285)||(24455046-24455282)
chr2 (359-408)||(24455400-24455449)
[»] chr8 (4 HSPs)
chr8 (405-782)||(43228075-43228444)
chr8 (175-263)||(43227403-43227489)
chr8 (427-626)||(14839131-14839323)
chr8 (359-401)||(43227620-43227662)
[»] chr3 (3 HSPs)
chr3 (403-634)||(49234306-49234533)
chr3 (405-634)||(49233735-49233959)
chr3 (193-274)||(48909245-48909326)
[»] chr1 (4 HSPs)
chr1 (405-634)||(50862518-50862741)
chr1 (405-458)||(47723984-47724037)
chr1 (405-458)||(47730976-47731029)
chr1 (203-270)||(35361052-35361119)
[»] chr7 (1 HSPs)
chr7 (427-626)||(27962367-27962559)


Alignment Details
Target: chr2 (Bit Score: 362; Significance: 0; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 362; E-Value: 0
Query Start/End: Original strand, 357 - 786
Target Start/End: Complemental strand, 1615302 - 1614879
Alignment:
Q  357 ggtaggcaaattcaacattgtgaagcttgaaagaagaatgactatatatgcatagtttggagagagatcgaggtgattttctgcataatttagagctggt 456  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1615302 ggtaggcaaattcaacattgtgaagcttgaaagaagaatgactatatatgcatagtttggagagagatcgaggtgattttctgcataatttagagctggt 1615203  T
Q  457 tttctacatgtggactaatgtagtgcagcagcagtgttttggtattgcagctgctatgtagtggcattttttcttccccgtgttctgatttttctcttta 556  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1615202 tttctacatgtggactaatgtagtgcagcagcagtgttttggtattgcagctgctatgtagtggcattttttcttccccgtgttctgatttttctcttta 1615103  T
Q  557 tgtttcagctgcactgcaccgtatcggttttattttctgctctttgcctttgtcttcatgtgttttggctcaatttacnnnnnnnnntattgtcttttta 656  Q
    |||||||     |||||||||||||||||||||||||| ||||||||||||||||||||| |||||| ||||||||||         |||||||||||||    
T  1615102 tgtttca-----actgcaccgtatcggttttattttcttctctttgcctttgtcttcatgcgttttgtctcaatttac-aaaaaaaatattgtcttttta 1615009  T
Q  657 accggctgtttgtattgttctcctgttgctttttcagaataggttgttgtagtttggctctttagtgtagttgattttgctttgttttctttgggattgt 756  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  1615008 accggctgtttgtattgttctcctgttgctttttcagaataggttgttgtagtttggctctttagtgtagttgattttgctttgttttctttgagattgt 1614909  T
Q  757 ttcttatgttctcttggttcttattttctt 786  Q
    ||||||||||||||||||||||||||||||    
T  1614908 ttcttatgttctcttggttcttattttctt 1614879  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 240; E-Value: 1e-132
Query Start/End: Original strand, 15 - 285
Target Start/End: Complemental strand, 1615675 - 1615407
Alignment:
Q  15 gaataatcttgctttttggttcttctaacagtttagttttctattttaaacaaatttaacaccaccaacatagcatgaagcagagtatcaaaatcaagta 114  Q
    |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1615675 gaattatcttgctttttggttcttctaacagtttagttttctattttaaacaaatttaacaccaccaacatagcatgaagcagagtatcaaaatcaagta 1615576  T
Q  115 ctgtttgatgggaaaaaatcttacttgatgtcacagtcactgtagttgcaggttgcaatcttatgttattttttcccccttattgtatggatggtggtgt 214  Q
     |||||||||||||||||||||||  ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |||||||||||||||    
T  1615575 ttgtttgatgggaaaaaatcttac--gatgtcacagtcactgtggttgcaggttgcaatcttatgttattttttcccccttattttatggatggtggtgt 1615478  T
Q  215 ggctaggtttgaattcatacgctgaagatgatgaagagtgatgctttgacgagaagatgaaaattggacag 285  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||    
T  1615477 ggctaggtttgaattcatacgctgaagatgatgaagagtgatgctttgatgagaagatgaaaattggacag 1615407  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 216; E-Value: 1e-118
Query Start/End: Original strand, 405 - 782
Target Start/End: Original strand, 24455839 - 24456209
Alignment:
Q  405 tgcatagtttggagagagatcgaggtgattttctgcataatttagagctggttttctacatgtggactaatgtagtgcagcagcagtgttttggtattgc 504  Q
    |||||| ||||||| |||||||||||||||||||||||||||||||||||||||||  |||||||||||||||| |||| ||||||||||||||||||||    
T  24455839 tgcataatttggagcgagatcgaggtgattttctgcataatttagagctggttttcggcatgtggactaatgtaatgcaacagcagtgttttggtattgc 24455938  T
Q  505 agctgctatgtagtggcattttttcttccccgtgttctgatttttctctttatgtttcagctgcactgcaccgtatcggttttattttctgctctttgcc 604  Q
    |||||||| ||||||| |||||||| ||||  ||||||||||||||||| |  | | |||||||||     | ||||||||||||||||| |||||||||    
T  24455939 agctgctacgtagtggtattttttcctccctatgttctgatttttctctgt--ggtccagctgcac-----catatcggttttattttcttctctttgcc 24456031  T
Q  605 tttgtcttca-tgtgttttggctcaatttacnnnnnnnnntattgtctttttaaccggctgtttgtattgttctcctgttgctttttcagaataggttgt 703  Q
    ||||| |||  ||||||||||||||||||||         ||||||||||||||| ||||||||||||||||||||||||  |||||| |||||||||||    
T  24456032 tttgttttctgtgtgttttggctcaatttacaaaaaaat-tattgtctttttaactggctgtttgtattgttctcctgttagtttttctgaataggttgt 24456130  T
Q  704 tgtagtttggctctttagtgtagttgattttgctttgttttctttgggattgtttcttatgttctcttggttcttattt 782  Q
    |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  24456131 tgtagtttggctctatagtgtagttgattttgctttgttttctttgggattgtttcttatgttctcttggttcttattt 24456209  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 127; E-Value: 4e-65
Query Start/End: Original strand, 42 - 285
Target Start/End: Original strand, 24455046 - 24455282
Alignment:
Q  42 acagtttagttttctattttaaacaaatttaacaccaccaacatagcatgaagca-gagtatcaaaatcaagtactgtttgatgggaaaaaatcttactt 140  Q
    |||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||  ||||||||||||||||||||||||     
T  24455046 acagtttagttttctattttaaacaaatttaacaccaccaacataggatgaagcaggagtatcaaaatcaagttttgtttgatgggaaaaaatcttact- 24455144  T
Q  141 gatgtcacagtcactgtagttgcaggttgcaatcttatg--ttattttttcccccttattgtatggatggtggtgtggctaggtttg-aattcatacgct 237  Q
              | ||||| |||||||||||||||||||||  || |||||||  || |||| ||||||||||||||||||||| |||| ||||||||||||    
T  24455145 ----------ttactgtggttgcaggttgcaatcttatgtttttttttttcttccgtattttatggatggtggtgtggctagatttgaaattcatacgct 24455234  T
Q  238 gaagatgatgaagagtgatgctttgacgagaagatgaaaattggacag 285  Q
    |||||||||||||||||||||||| | |||||||||||| ||||||||    
T  24455235 gaagatgatgaagagtgatgcttttatgagaagatgaaatttggacag 24455282  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 46; E-Value: 8e-17
Query Start/End: Original strand, 359 - 408
Target Start/End: Original strand, 24455400 - 24455449
Alignment:
Q  359 taggcaaattcaacattgtgaagcttgaaagaagaatgactatatatgca 408  Q
    ||||||||||||| ||||||||||||||||||||||||||||||||||||    
T  24455400 taggcaaattcaatattgtgaagcttgaaagaagaatgactatatatgca 24455449  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 179; Significance: 3e-96; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 179; E-Value: 3e-96
Query Start/End: Original strand, 405 - 782
Target Start/End: Original strand, 43228075 - 43228444
Alignment:
Q  405 tgcatagtttggagagagatcgaggtgattttctgcataatttagagctggttttctacatgtggactaatgtagtgcagcagcagtgttttggtattgc 504  Q
    |||||| ||||||| ||||||| |||||||||||||||||||||||| ||| ||||  |||||||||||||||||||||||||||||||||| | | |||    
T  43228075 tgcataatttggagtgagatcggggtgattttctgcataatttagagttggctttcggcatgtggactaatgtagtgcagcagcagtgtttttgcactgc 43228174  T
Q  505 agctgctatgtagtggcattttttcttccccgtgttctgatttttctctttatgtttcagctgcactgcaccgtatcggttttattttctgctctttgcc 604  Q
    |||| |||  | ||||| ||||||| |||| | |||||||||| ||||| |  ||| ||||||||      | ||||||||||| ||||| |||||||||    
T  43228175 agcttctacctggtggcgttttttcctccctgcgttctgatttgtctctgt--gttccagctgcaa-----catatcggttttactttcttctctttgcc 43228267  T
Q  605 tttgtcttcatgtgttttggctcaatttacnnnnnnnnntattgtctttttaaccggctgtttgtattgttctcctgttgctttttcagaataggttgtt 704  Q
    || |||||| ||||||||||||||||||||         || |||||||||||| |||||||||||||| |||||||||||||||| |||||||||||||    
T  43228268 ttggtcttcgtgtgttttggctcaatttacaaaaaaaa-tactgtctttttaactggctgtttgtattggtctcctgttgcttttttagaataggttgtt 43228366  T
Q  705 gtagtttggctctttagtgtagttgattttgctttgttttctttgggattgtttcttatgttctcttggttcttattt 782  Q
    ||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||| ||||    
T  43228367 gtagtttggctctttagtgtagttgattttggtttgttttctttgggatagtttcttatgttctcttggttctcattt 43228444  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 58; E-Value: 6e-24
Query Start/End: Original strand, 175 - 263
Target Start/End: Original strand, 43227403 - 43227489
Alignment:
Q  175 ttatgttattttttcccccttattgtatggatggtggtgtggctaggtttgaattcatacgctgaagatgatgaagagtgatgctttga 263  Q
    |||||||||||||| ||  ||||| |||||||||||||||||||||||||||||||||||| |||||||||  ||||||||||||||||    
T  43227403 ttatgttatttttttcc--ttattttatggatggtggtgtggctaggtttgaattcatacgttgaagatgacaaagagtgatgctttga 43227489  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 53; E-Value: 5e-21
Query Start/End: Original strand, 427 - 626
Target Start/End: Original strand, 14839131 - 14839323
Alignment:
Q  427 aggtgattttctgcataatttagagctggttttctacatgtggactaatgtagtgcagcagcagtgttttggtattgcagctgctatgtagtggcatttt 526  Q
    |||| ||||||  |||| ||||||||||||||||  ||| |||||||||||| |||||| || ||||||||||| |||| |||||| |||| ||  ||||    
T  14839131 aggtaattttcgacatagtttagagctggttttcagcatatggactaatgtaatgcagccgcggtgttttggtactgcacctgctacgtagcggagtttt 14839230  T
Q  527 ttcttccccgtgttctgatttttctctttatgtttcagctgcactgcaccgtatcggttttattttctgctctttgcctttgtcttcatgtgttttggct 626  Q
    ||| ||||   |||||||||| ||||  | |||| |||     ||||| | ||||||||||||||||| |||||| ||| |||||||| |||||||||||    
T  14839231 ttcctccctacgttctgatttgtctc--tgtgttccag-----ctgcaacatatcggttttattttcttctcttttcctctgtcttcaagtgttttggct 14839323  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 359 - 401
Target Start/End: Original strand, 43227620 - 43227662
Alignment:
Q  359 taggcaaattcaacattgtgaagcttgaaagaagaatgactat 401  Q
    |||||||||||||||||||||||||||||||||||||||||||    
T  43227620 taggcaaattcaacattgtgaagcttgaaagaagaatgactat 43227662  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 125; Significance: 6e-64; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 125; E-Value: 6e-64
Query Start/End: Original strand, 403 - 634
Target Start/End: Complemental strand, 49234533 - 49234306
Alignment:
Q  403 tatgcatagtttggagagagatcgaggtgattttct-gcataatttagagctggttttctacatgtggactaatgtagtgcagcagcagtgttttggtat 501  Q
    |||||||| ||||||| ||||||||||||||||||| ||||||||||||||||||||||| ||||||| |||||||| |||||||||||||||||||||     
T  49234533 tatgcataatttggagcgagatcgaggtgattttcttgcataatttagagctggttttctgcatgtgggctaatgtaatgcagcagcagtgttttggtac 49234434  T
Q  502 tgcagctgctatgtagtggcattttttcttccccgtgttctgatttttctctttatgtttcagctgcactgcaccgtatcggttttattttctgctcttt 601  Q
    |||||||||||  ||||||||||||||| |||| |||||||||||| ||| ||| |||| ||||||||      | ||| ||||||| ||||| ||||||    
T  49234433 tgcagctgctacatagtggcattttttcctccctgtgttctgatttgtctatttgtgttccagctgcaa-----catattggttttaatttcttctcttt 49234339  T
Q  602 gcctttgtcttcatgtgttttggctcaatttac 634  Q
    ||||| |||||||||||||||||||||||||||    
T  49234338 gccttggtcttcatgtgttttggctcaatttac 49234306  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 118; E-Value: 9e-60
Query Start/End: Original strand, 405 - 634
Target Start/End: Complemental strand, 49233959 - 49233735
Alignment:
Q  405 tgcatagtttggagagagatcgaggtgattttctgcataatttagagctggttttctacatgtggactaatgtagtgcagcagcagtgttttggtattgc 504  Q
    |||||| ||||||| |||||||||||||||||||||||||||||||||||||||||  |||||||||||||||||||||||||||||||||||||| | |    
T  49233959 tgcataatttggagcgagatcgaggtgattttctgcataatttagagctggttttcggcatgtggactaatgtagtgcagcagcagtgttttggtactac 49233860  T
Q  505 agctgctatgtagtggcattttttcttccccgtgttctgatttttctctttatgtttcagctgcactgcaccgtatcggttttattttctgctctttgcc 604  Q
    ||||||||  |||||||||| |||| |||| ||||| |||||| ||| ||| |||| ||||||||      | ||| ||||||| ||||| |||||||||    
T  49233859 agctgctacatagtggcattctttcctccctgtgttttgatttgtctatttgtgttccagctgcaa-----catattggttttaatttcttctctttgcc 49233765  T
Q  605 tttgtcttcatgtgttttggctcaatttac 634  Q
    || ||||||||||||||||||| |||||||    
T  49233764 ttggtcttcatgtgttttggcttaatttac 49233735  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 193 - 274
Target Start/End: Complemental strand, 48909326 - 48909245
Alignment:
Q  193 cttattgtatggatggtggtgtggctaggtttgaattcatacgctgaagatgatgaagagtgatgctttgacgagaagatga 274  Q
    |||||| ||||||||||||| | |||||| |||| |||| | | ||||||||||| ||||||| ||||||| ||||||||||    
T  48909326 cttattttatggatggtggtcttgctaggcttgagttcaaatgttgaagatgatggagagtgaggctttgatgagaagatga 48909245  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 94; Significance: 2e-45; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 94; E-Value: 2e-45
Query Start/End: Original strand, 405 - 634
Target Start/End: Original strand, 50862518 - 50862741
Alignment:
Q  405 tgcatagtttggagagagatcgaggtgattttctgcataatttagagctggttttctacatgtggactaatgtagtgcagcagcagtgttttggtattgc 504  Q
    |||||| ||||||| ||||||||||||||||||||||||||||||||||| |||||  ||||||||||||||||||| | ||||| || ||||||| |||    
T  50862518 tgcataatttggagcgagatcgaggtgattttctgcataatttagagctgattttcggcatgtggactaatgtagtgtatcagcactgctttggtactgc 50862617  T
Q  505 agctgctatgtagtggcattttttcttccccgtgttctgatttttctctttatgtttcagctgcactgcaccgtatcggttttattttctgctctttgcc 604  Q
    ||||| ||  ||||||| ||||||| |||| |||||||||||| ||| ||| |||| ||     |||||| | |||  |||||| ||||| |||||||||    
T  50862618 agctggtacatagtggcgttttttcctccctgtgttctgatttgtctatttgtgttcca-----actgcaacatattagttttaatttcttctctttgcc 50862712  T
Q  605 tttgtcttcatgtgttttggctcaatttac 634  Q
    || ||||||||||||||||| |||||||||    
T  50862713 ttggtcttcatgtgttttgg-tcaatttac 50862741  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 405 - 458
Target Start/End: Original strand, 47723984 - 47724037
Alignment:
Q  405 tgcatagtttggagagagatcgaggtgattttctgcataatttagagctggttt 458  Q
    |||||| ||||||| ||||||||||||||||||||||| |||||||||||||||    
T  47723984 tgcataatttggagcgagatcgaggtgattttctgcatcatttagagctggttt 47724037  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 405 - 458
Target Start/End: Original strand, 47730976 - 47731029
Alignment:
Q  405 tgcatagtttggagagagatcgaggtgattttctgcataatttagagctggttt 458  Q
    |||||| ||||||| ||||||||||||||||||||||| |||||||||||||||    
T  47730976 tgcataatttggagcgagatcgaggtgattttctgcatcatttagagctggttt 47731029  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 203 - 270
Target Start/End: Complemental strand, 35361119 - 35361052
Alignment:
Q  203 ggatggtggtgtggctaggtttgaattcatacgctgaagatgatgaagagtgatgctttgacgagaag 270  Q
    ||||||||||||||||   ||||| |||||| | |||||||||||||||||||  |||||| ||||||    
T  35361119 ggatggtggtgtggctctatttgagttcataggttgaagatgatgaagagtgagactttgatgagaag 35361052  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 53; Significance: 5e-21; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 53; E-Value: 5e-21
Query Start/End: Original strand, 427 - 626
Target Start/End: Complemental strand, 27962559 - 27962367
Alignment:
Q  427 aggtgattttctgcataatttagagctggttttctacatgtggactaatgtagtgcagcagcagtgttttggtattgcagctgctatgtagtggcatttt 526  Q
    |||| ||||||  |||| ||||||||||||||||  ||| |||||||||||| |||||| || ||||||||||| |||| |||||| |||| ||  ||||    
T  27962559 aggtaattttcgacatagtttagagctggttttcagcatatggactaatgtaatgcagccgcggtgttttggtactgcacctgctacgtagcggagtttt 27962460  T
Q  527 ttcttccccgtgttctgatttttctctttatgtttcagctgcactgcaccgtatcggttttattttctgctctttgcctttgtcttcatgtgttttggct 626  Q
    ||| ||||   |||||||||| ||||  | |||| |||     ||||| | ||||||||||||||||| |||||| ||| |||||||| |||||||||||    
T  27962459 ttcctccctacgttctgatttgtctc--tgtgttccag-----ctgcaacatatcggttttattttcttctcttttcctctgtcttcaagtgttttggct 27962367  T

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