View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF15957_low_2 (Length: 570)
Name: NF15957_low_2
Description: NF15957
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15957_low_2 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 172; Significance: 4e-92; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 172; E-Value: 4e-92
Query Start/End: Original strand, 96 - 311
Target Start/End: Original strand, 10545187 - 10545402
Alignment:
| Q |
96 |
caataaggaagaagaacacgctagggcacaattacttagtccacaggttattaagaaccctagtgataaagttggttgtaactaactctcagagttagtt |
195 |
Q |
| |
|
|||||||||||||||||||||||||||||| ||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
10545187 |
caataaggaagaagaacacgctagggcacagttacttagtccacgggttattaacaaccctagtgataaagttggttgtaactaactctcagagttagtt |
10545286 |
T |
|
| Q |
196 |
atgatagaggacatgatcctataagatagagttcacaatatcttagcatatactatcattgtaactctatatatagttgtaacaccttcatccttcagca |
295 |
Q |
| |
|
|||||||||||| ||||||||||| ||||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||| |||||| | |
|
|
| T |
10545287 |
atgatagaggacgtgatcctataatatagagttcacaatagcttaacatatactatcattgtaactctatatatagttgtaacaccttcatgcttcagta |
10545386 |
T |
|
| Q |
296 |
atgaaaataaatatca |
311 |
Q |
| |
|
||||||| | |||||| |
|
|
| T |
10545387 |
atgaaaacagatatca |
10545402 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 41; Significance: 0.00000000000006; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 53 - 133
Target Start/End: Original strand, 10596448 - 10596528
Alignment:
| Q |
53 |
tattgaaacaggatattaaagagttagaatcacatctgctagtcaataaggaagaagaacacgctagggcacaattactta |
133 |
Q |
| |
|
|||||||||| ||||| |||||||| || ||| |||||| ||||||||| |||||||||||||||||||||||||||| |
|
|
| T |
10596448 |
tattgaaacaagatataaaagagttggagtcaagcttgctagccaataaggaggaagaacacgctagggcacaattactta |
10596528 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 510 - 561
Target Start/End: Complemental strand, 15307895 - 15307844
Alignment:
| Q |
510 |
tctgagattgttcttgatcagtctagtccgttttttgttcatcctgatgatg |
561 |
Q |
| |
|
||||||||||||||||||||||||||||| ||||||||||| |||| ||||| |
|
|
| T |
15307895 |
tctgagattgttcttgatcagtctagtccattttttgttcaccctggtgatg |
15307844 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 510 - 561
Target Start/End: Complemental strand, 15313189 - 15313138
Alignment:
| Q |
510 |
tctgagattgttcttgatcagtctagtccgttttttgttcatcctgatgatg |
561 |
Q |
| |
|
||||||||||||||||||||||||||||| ||||||||||| |||| ||||| |
|
|
| T |
15313189 |
tctgagattgttcttgatcagtctagtccattttttgttcaccctggtgatg |
15313138 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 29; Significance: 0.0000008; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 96 - 132
Target Start/End: Original strand, 46142926 - 46142962
Alignment:
| Q |
96 |
caataaggaagaagaacacgctagggcacaattactt |
132 |
Q |
| |
|
||||||||||||||||||||||| |||| |||||||| |
|
|
| T |
46142926 |
caataaggaagaagaacacgctacggcataattactt |
46142962 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University