View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF15957_low_3 (Length: 512)

Name: NF15957_low_3
Description: NF15957
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF15957_low_3
NF15957_low_3
[»] chr3 (10 HSPs)
chr3 (18-509)||(10504286-10504753)
chr3 (441-485)||(13845419-13845463)
chr3 (186-253)||(9842177-9842244)
chr3 (186-253)||(9853196-9853263)
chr3 (348-447)||(13845615-13845714)
chr3 (348-425)||(10430280-10430357)
chr3 (376-425)||(10264478-10264527)
chr3 (335-419)||(10360243-10360328)
chr3 (444-473)||(10532530-10532559)
chr3 (348-405)||(11778715-11778772)
[»] chr8 (1 HSPs)
chr8 (361-462)||(11488780-11488881)
[»] chr2 (1 HSPs)
chr2 (257-425)||(26910473-26910643)
[»] chr4 (1 HSPs)
chr4 (385-462)||(25793913-25793987)


Alignment Details
Target: chr3 (Bit Score: 259; Significance: 1e-144; HSPs: 10)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 259; E-Value: 1e-144
Query Start/End: Original strand, 18 - 509
Target Start/End: Original strand, 10504286 - 10504753
Alignment:
Q  18 ctactatgtttttaattctttatcattgtaaagaaaactaagtaagtatttcacagaactaaaatttgtgcacatttgttgaataaagttgaattgctat 117  Q
    |||||||||||| ||||||||||| ||||||||||||||||||||| |||||||||||  |||||||||||||  ||||||||||||||||||||||||     
T  10504286 ctactatgttttgaattctttatctttgtaaagaaaactaagtaaggatttcacagaatcaaaatttgtgcac--ttgttgaataaagttgaattgctac 10504383  T
Q  118 atttatctcaagacatcatagcaaaatcaatattttactgtcataaatgggatagtatacaactgagaaattcagctgtaataactcattatgttttgct 217  Q
    ||||||||||||| ||||||||| |||||||||||||||||||||| ||||||||  ||||||||||||||||||||| ||||||||||||||||||| |    
T  10504384 atttatctcaagaaatcatagcagaatcaatattttactgtcataattgggatag--tacaactgagaaattcagctggaataactcattatgttttgtt 10504481  T
Q  218 atgaaatgtgcttgtgaataaaagtagaattaatttggttttggaaactggaatctgaattgaattgtttgaataacattttatacagcaataaaaatta 317  Q
    |||||||||||||| |||||||| ||||          ||||| |||||||||||||| | ||||| ||| |  |||||||| |||||||||||||||||    
T  10504482 atgaaatgtgcttgagaataaaactaga---------tttttgtaaactggaatctgagtggaattattttacgaacattttgtacagcaataaaaatta 10504572  T
Q  318 cagtaaggtcttcagaactaatgaaagaataatgcttatttgatctttacaggagattaaggtctatgtggatgaaaatcagctcactggatgcattgaa 417  Q
    || ||||||||||||| |||||||||||| ||||||||||||||||||||||||||| |||| ||| ||||||||||||||| || ||||||| ||| ||    
T  10504573 ca-taaggtcttcagagctaatgaaagaaaaatgcttatttgatctttacaggagatcaaggcctaagtggatgaaaatcaggtcgctggatgaattcaa 10504671  T
Q  418 gacaaatgtgggtcatgttatttttgtcatgattcttcttgtaaacttgttttagattggatttacttacctaatatacaatctgcatgagc 509  Q
    ||||||||||||||          ||||||||||||||||||||||||||||||||||||||||||||| ||||||| || |||||||||||    
T  10504672 gacaaatgtgggtc----------tgtcatgattcttcttgtaaacttgttttagattggatttacttagctaatatgcagtctgcatgagc 10504753  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 441 - 485
Target Start/End: Complemental strand, 13845463 - 13845419
Alignment:
Q  441 ttgtcatgattcttcttgtaaacttgttttagattggatttactt 485  Q
    |||||||||||||||||||||||||||||||||||||||||||||    
T  13845463 ttgtcatgattcttcttgtaaacttgttttagattggatttactt 13845419  T

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Target: chr3; HSP #3
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 186 - 253
Target Start/End: Original strand, 9842177 - 9842244
Alignment:
Q  186 aattcagctgtaataactcattatgttttgctatgaaatgtgcttgtgaataaaagtagaattaattt 253  Q
    |||||||||| ||||||||| ||  ||| |||||| ||||||||||||||||||| ||||||||||||    
T  9842177 aattcagctggaataactcaatacatttagctatgtaatgtgcttgtgaataaaactagaattaattt 9842244  T

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Target: chr3; HSP #4
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 186 - 253
Target Start/End: Original strand, 9853196 - 9853263
Alignment:
Q  186 aattcagctgtaataactcattatgttttgctatgaaatgtgcttgtgaataaaagtagaattaattt 253  Q
    |||||||||| ||||||||| ||  ||| |||||| ||||||||||||||||||| ||||||||||||    
T  9853196 aattcagctggaataactcaatacatttagctatgtaatgtgcttgtgaataaaactagaattaattt 9853263  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 348 - 447
Target Start/End: Complemental strand, 13845714 - 13845615
Alignment:
Q  348 aatgcttatttgatctttacaggagattaaggtctatgtggatgaaaatcagctcactggatgcattgaagacaaatgtgggtcatgttatttttgtcat 447  Q
    ||||||| |||||| ||| |||||||| |||| ||| |||||||||||||||| | || | || |||||||||||| |||||  |||||||| |||||||    
T  13845714 aatgcttttttgatatttccaggagatcaaggcctaagtggatgaaaatcagcccgcttgttgaattgaagacaaaagtggggaatgttattcttgtcat 13845615  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 348 - 425
Target Start/End: Complemental strand, 10430357 - 10430280
Alignment:
Q  348 aatgcttatttgatctttacaggagattaaggtctatgtggatgaaaatcagctcactggatgcattgaagacaaatg 425  Q
    |||||||||||||||||| |||||||| |||  ||| | |||||||||||||| |||| |||| |||||||| |||||    
T  10430357 aatgcttatttgatcttttcaggagatcaagccctaagcggatgaaaatcagcccactcgatgaattgaagaaaaatg 10430280  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 376 - 425
Target Start/End: Original strand, 10264478 - 10264527
Alignment:
Q  376 aaggtctatgtggatgaaaatcagctcactggatgcattgaagacaaatg 425  Q
    |||| |||||||||||| |||||||||||| |||| |||||||| |||||    
T  10264478 aaggcctatgtggatgataatcagctcacttgatgaattgaagaaaaatg 10264527  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 335 - 419
Target Start/End: Complemental strand, 10360328 - 10360243
Alignment:
Q  335 ctaatgaaagaataatgcttatttgatctttacaggagattaa-ggtctatgtggatgaaaatcagctcactggatgcattgaaga 419  Q
    ||||| |||| | ||||||||||| | |||| |||||||| || || |||||||||||| |||| ||||||| |||| ||||||||    
T  10360328 ctaatcaaaggaaaatgcttatttcaacttttcaggagatcaaaggcctatgtggatgataatctgctcacttgatgaattgaaga 10360243  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 444 - 473
Target Start/End: Original strand, 10532530 - 10532559
Alignment:
Q  444 tcatgattcttcttgtaaacttgttttaga 473  Q
    ||||||||||||||||||||||||||||||    
T  10532530 tcatgattcttcttgtaaacttgttttaga 10532559  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 348 - 405
Target Start/End: Complemental strand, 11778772 - 11778715
Alignment:
Q  348 aatgcttatttgatctttacaggagattaaggtctatgtggatgaaaatcagctcact 405  Q
    |||||||||||||| ||| |||||||| || |  |||||||||||||||||| |||||    
T  11778772 aatgcttatttgatattttcaggagatcaaagcttatgtggatgaaaatcagttcact 11778715  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 50; Significance: 2e-19; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 361 - 462
Target Start/End: Original strand, 11488780 - 11488881
Alignment:
Q  361 tctttacaggagattaaggtctatgtggatgaaaatcagctcactggatgcattgaagacaaatgtgggtcatgttatttttgtcatgattcttcttgta 460  Q
    ||||| |||||||| |||| |||  ||||| |||||||||||| | |||| |||||||||||| ||||  |||||||||||| |||||||||||||||||    
T  11488780 tcttttcaggagatcaaggcctaaatggatcaaaatcagctcatttgatgaattgaagacaaaagtggagcatgttatttttatcatgattcttcttgta 11488879  T
Q  461 aa 462  Q
    ||    
T  11488880 aa 11488881  T

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Target: chr2 (Bit Score: 48; Significance: 3e-18; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 257 - 425
Target Start/End: Original strand, 26910473 - 26910643
Alignment:
Q  257 tttggaaactggaatctgaattgaattgtttgaataacattttatacagcaataaaaatt--acagtaaggtcttcagaactaatgaaagaataatgctt 354  Q
    |||| |||||| ||||| ||| ||||||| | || ||| |||| |||| |||||||||||  ||| | | |||||  || ||||| |||||| |||||||    
T  26910473 tttgtaaactgaaatctaaatggaattgtctaaagaactttttctacaacaataaaaatttgacaatcatgtctttggagctaattaaagaaaaatgctt 26910572  T
Q  355 atttgatctttacaggagattaaggtctatgtggatgaaaatcagctcactggatgcattgaagacaaatg 425  Q
    ||||||||||| |||||||| || | ||| || |||||||||||||||||| |||| || ||||| |||||    
T  26910573 atttgatcttttcaggagatcaaagcctaagttgatgaaaatcagctcacttgatgaatcgaagaaaaatg 26910643  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 385 - 462
Target Start/End: Original strand, 25793913 - 25793987
Alignment:
Q  385 gtggatgaaaatcagctcactggatgcattgaagacaaatgtgggtcatgttatttttgtcatgattcttcttgtaaa 462  Q
    ||||||||||||||||||||| |||| | |||| ||||| || || |||||||   |||| |||||||||||||||||    
T  25793913 gtggatgaaaatcagctcacttgatgaactgaaaacaaaagtagggcatgtta---ttgtaatgattcttcttgtaaa 25793987  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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