View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF15958_low_2 (Length: 514)

Name: NF15958_low_2
Description: NF15958
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF15958_low_2
NF15958_low_2
[»] chr1 (18 HSPs)
chr1 (17-332)||(1724812-1725126)
chr1 (330-494)||(1725174-1725338)
chr1 (362-415)||(1432437-1432490)
chr1 (360-441)||(34619471-34619552)
chr1 (361-441)||(4700160-4700239)
chr1 (361-441)||(36070146-36070226)
chr1 (361-397)||(37591372-37591408)
chr1 (401-452)||(48064178-48064229)
chr1 (371-441)||(1005137-1005207)
chr1 (362-441)||(33527242-33527321)
chr1 (402-443)||(4920901-4920942)
chr1 (361-397)||(7028232-7028268)
chr1 (401-441)||(10744188-10744228)
chr1 (361-397)||(17420143-17420179)
chr1 (361-397)||(23895276-23895312)
chr1 (361-397)||(26184691-26184727)
chr1 (361-441)||(34404932-34405012)
chr1 (361-397)||(50319232-50319268)
[»] chr5 (19 HSPs)
chr5 (361-434)||(11054089-11054162)
chr5 (366-441)||(32927977-32928052)
chr5 (379-432)||(5390179-5390232)
chr5 (361-397)||(35960354-35960390)
chr5 (361-397)||(37063168-37063204)
chr5 (358-397)||(12460091-12460130)
chr5 (402-443)||(8089677-8089718)
chr5 (376-441)||(9106721-9106786)
chr5 (402-443)||(10772029-10772070)
chr5 (361-397)||(5963376-5963412)
chr5 (361-397)||(6593240-6593276)
chr5 (361-397)||(7096221-7096257)
chr5 (361-393)||(7853602-7853634)
chr5 (361-397)||(12407755-12407791)
chr5 (361-397)||(12425511-12425547)
chr5 (361-397)||(13224369-13224405)
chr5 (361-397)||(28586860-28586896)
chr5 (361-397)||(34975318-34975354)
chr5 (364-396)||(36638687-36638719)
[»] chr7 (13 HSPs)
chr7 (363-432)||(30535468-30535537)
chr7 (361-434)||(12110263-12110336)
chr7 (367-441)||(6824815-6824888)
chr7 (400-434)||(7612346-7612380)
chr7 (359-397)||(33894563-33894601)
chr7 (403-441)||(40598467-40598505)
chr7 (361-414)||(36874059-36874112)
chr7 (361-397)||(1417204-1417240)
chr7 (361-397)||(15328546-15328582)
chr7 (361-397)||(30496644-30496680)
chr7 (401-441)||(31002952-31002992)
chr7 (403-439)||(32156891-32156927)
chr7 (361-397)||(48157214-48157250)
[»] chr3 (8 HSPs)
chr3 (361-416)||(2128345-2128400)
chr3 (361-397)||(35394795-35394831)
chr3 (362-397)||(2304336-2304371)
chr3 (402-441)||(37138242-37138281)
chr3 (364-441)||(44014176-44014253)
chr3 (361-397)||(1395611-1395647)
chr3 (361-441)||(24235777-24235857)
chr3 (361-397)||(32703078-32703114)
[»] chr8 (15 HSPs)
chr8 (363-421)||(13459562-13459620)
chr8 (402-443)||(2840237-2840278)
chr8 (402-443)||(2844924-2844965)
chr8 (361-397)||(4558738-4558774)
chr8 (361-397)||(14482142-14482178)
chr8 (361-397)||(39392755-39392791)
chr8 (361-396)||(1470950-1470985)
chr8 (403-445)||(2482738-2482780)
chr8 (355-397)||(10114430-10114472)
chr8 (361-443)||(37152984-37153066)
chr8 (364-441)||(16163375-16163452)
chr8 (402-443)||(44426538-44426579)
chr8 (361-397)||(26215436-26215472)
chr8 (401-441)||(31118858-31118898)
chr8 (361-397)||(42597341-42597377)
[»] chr4 (18 HSPs)
chr4 (401-442)||(26883874-26883915)
chr4 (361-441)||(21593105-21593185)
chr4 (403-443)||(50298409-50298449)
chr4 (403-441)||(43824181-43824219)
chr4 (363-397)||(45128406-45128440)
chr4 (360-393)||(1404366-1404399)
chr4 (361-406)||(3155534-3155579)
chr4 (361-406)||(6364080-6364125)
chr4 (361-394)||(30770826-30770859)
chr4 (404-441)||(54214895-54214932)
chr4 (361-397)||(9680604-9680640)
chr4 (361-397)||(11264241-11264277)
chr4 (361-397)||(21683573-21683609)
chr4 (339-367)||(28300303-28300331)
chr4 (401-441)||(30066916-30066956)
chr4 (361-397)||(30338686-30338722)
chr4 (401-441)||(47771876-47771916)
chr4 (361-397)||(51044553-51044589)
[»] chr6 (6 HSPs)
chr6 (361-397)||(2514642-2514678)
chr6 (361-396)||(781326-781361)
chr6 (361-396)||(7354145-7354180)
chr6 (358-395)||(31624200-31624237)
chr6 (361-397)||(507160-507196)
chr6 (401-441)||(7946023-7946063)
[»] chr2 (14 HSPs)
chr2 (361-397)||(37033984-37034020)
chr2 (361-440)||(4090246-4090325)
chr2 (364-443)||(7936920-7936999)
chr2 (403-441)||(40158644-40158682)
chr2 (401-434)||(39866477-39866510)
chr2 (361-406)||(42457879-42457924)
chr2 (385-441)||(450005-450061)
chr2 (361-397)||(5133712-5133748)
chr2 (361-397)||(10150695-10150731)
chr2 (361-397)||(12215747-12215783)
chr2 (361-397)||(25609736-25609772)
chr2 (361-397)||(26522718-26522754)
chr2 (401-441)||(28039466-28039506)
chr2 (361-397)||(41809337-41809373)
[»] scaffold0590 (1 HSPs)
scaffold0590 (361-397)||(1168-1204)
[»] scaffold0275 (1 HSPs)
scaffold0275 (361-397)||(2771-2807)


Alignment Details
Target: chr1 (Bit Score: 252; Significance: 1e-140; HSPs: 18)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 252; E-Value: 1e-140
Query Start/End: Original strand, 17 - 332
Target Start/End: Original strand, 1724812 - 1725126
Alignment:
Q  17 accctcaccactgcttcttccagaatcacaaagaccaagaaaacagaagcagcacttgccaaggaaaagagaagaacgcgttccgacaaagtactcgacc 116  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||    
T  1724812 accctcaccactgcttcttccagaatcacaaagaccaagaaaacagaagcagcacttgccaaggaaaagagaagaacgcgttctgacaaagaactcgacc 1724911  T
Q  117 aagagacaattattgagctttacaacaataactctcatcttcatgttcctgttatgctttctcaagttttggatgttttctcaaattgttccttaacttc 216  Q
    | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||||||||||||||||    
T  1724912 aggagacaattattgagctttacaacaataactctcatcttcatgttcctgttatgctttctcaagtcttagatgttttctcaaattgttccttaacttc 1725011  T
Q  217 ttttgttgattgtactcttggtgctgctggtcactccaccaatgtttgtttcataaactaatcatcatttggtatattttgtttatagaaaagtagaaga 316  Q
    |||||||||||||||||||||||||||||||||||| || |||||| |||||||||||||||||||| | |  || ||||  ||||||||||||||||||    
T  1725012 ttttgttgattgtactcttggtgctgctggtcactctacaaatgttagtttcataaactaatcatcagtagaaat-ttttaattatagaaaagtagaaga 1725110  T
Q  317 gataagctgttttgct 332  Q
    ||||||||||||||||    
T  1725111 gataagctgttttgct 1725126  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 165; E-Value: 5e-88
Query Start/End: Original strand, 330 - 494
Target Start/End: Original strand, 1725174 - 1725338
Alignment:
Q  330 gcttatcatatgttcttaagttgttttcaacttattttatcttttattatagaaatagtttatacatacctgcttatgctataagctccaaattaagttg 429  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1725174 gcttatcatatgttcttaagttgttttcaacttattttatcttttattatagaaatagtttatacatacctgcttatgctataagctccaaattaagttg 1725273  T
Q  430 tttatacaaacatgtcttaagttctatgcattcacattgtaaaacacaattatccaatcaacaga 494  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1725274 tttatacaaacatgtcttaagttctatgcattcacattgtaaaacacaattatccaatcaacaga 1725338  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 362 - 415
Target Start/End: Complemental strand, 1432490 - 1432437
Alignment:
Q  362 tattttatcttttattatagaaatagtttatacatacctgcttatgctataagc 415  Q
    |||||||||||||| ||||||||||| |||||||||  ||||||||||||||||    
T  1432490 tattttatcttttactatagaaatagcttatacatatgtgcttatgctataagc 1432437  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 360 - 441
Target Start/End: Original strand, 34619471 - 34619552
Alignment:
Q  360 cttattttatcttttattatagaaatagtttatacatacctgcttatgctataagctccaaattaagttgtttatacaaaca 441  Q
    ||||||||||||||| |||||||||| | |||||||||     |||||||||||||| ||||||||| ||||||| ||||||    
T  34619471 cttattttatcttttgttatagaaatggcttatacataagcaattatgctataagctgcaaattaagctgtttatccaaaca 34619552  T

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Target: chr1; HSP #5
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 361 - 441
Target Start/End: Original strand, 4700160 - 4700239
Alignment:
Q  361 ttattttatcttttattatagaaatagtttatacatacctgcttatgctataagctccaaattaagttgtttatacaaaca 441  Q
    |||||||||||||| |||||||||||| || ||||||  |||||||| || ||||| |||||||||||||| || ||||||    
T  4700160 ttattttatcttttgttatagaaatagcttgtacataagtgcttatg-taaaagctgcaaattaagttgttaatccaaaca 4700239  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 361 - 441
Target Start/End: Complemental strand, 36070226 - 36070146
Alignment:
Q  361 ttattttatcttttattatagaaatagtttatacatacctgcttatgctataagctccaaattaagttgtttatacaaaca 441  Q
    |||||||||||||| ||||| ||||||   |||||||   |||||||||||||||| ||||||| | ||||||||||||||    
T  36070226 ttattttatcttttgttataaaaatagcccatacataagcgcttatgctataagctgcaaattaggctgtttatacaaaca 36070146  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 361 - 397
Target Start/End: Complemental strand, 37591408 - 37591372
Alignment:
Q  361 ttattttatcttttattatagaaatagtttatacata 397  Q
    |||||||||||||||||||||||||||||||||||||    
T  37591408 ttattttatcttttattatagaaatagtttatacata 37591372  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 401 - 452
Target Start/End: Complemental strand, 48064229 - 48064178
Alignment:
Q  401 gcttatgctataagctccaaattaagttgtttatacaaacatgtcttaagtt 452  Q
    |||||||||||||||| ||||||||||||||||| |||||||| | ||||||    
T  48064229 gcttatgctataagctgcaaattaagttgtttatccaaacatggcctaagtt 48064178  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 371 - 441
Target Start/End: Original strand, 1005137 - 1005207
Alignment:
Q  371 ttttattatagaaatagtttatacatacctgcttatgctataagctccaaattaagttgtttatacaaaca 441  Q
    |||| ||||||||||||||||||||||  || ||||| ||||||||  |||||| ||||||||| ||||||    
T  1005137 ttttgttatagaaatagtttatacataagtgtttatgatataagctgaaaattatgttgtttatccaaaca 1005207  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 362 - 441
Target Start/End: Original strand, 33527242 - 33527321
Alignment:
Q  362 tattttatcttttattatagaaatagtttatacatacctgcttatgctataagctccaaattaagttgtttatacaaaca 441  Q
    ||||||||||||| || ||||||||| |||| ||||   ||||||||| |||||| |||| |||| ||||||| ||||||    
T  33527242 tattttatcttttgttttagaaatagcttattcataagcgcttatgctctaagctgcaaaataagctgtttatccaaaca 33527321  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 402 - 443
Target Start/End: Original strand, 4920901 - 4920942
Alignment:
Q  402 cttatgctataagctccaaattaagttgtttatacaaacatg 443  Q
    ||||||||||||||| ||||||||| ||||||| ||||||||    
T  4920901 cttatgctataagctgcaaattaagctgtttatccaaacatg 4920942  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 361 - 397
Target Start/End: Complemental strand, 7028268 - 7028232
Alignment:
Q  361 ttattttatcttttattatagaaatagtttatacata 397  Q
    ||||||||||||||  |||||||||||||||||||||    
T  7028268 ttattttatcttttgctatagaaatagtttatacata 7028232  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 401 - 441
Target Start/End: Complemental strand, 10744228 - 10744188
Alignment:
Q  401 gcttatgctataagctccaaattaagttgtttatacaaaca 441  Q
    ||||||||||||||||   ||||||||||||||||||||||    
T  10744228 gcttatgctataagctgagaattaagttgtttatacaaaca 10744188  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 361 - 397
Target Start/End: Complemental strand, 17420179 - 17420143
Alignment:
Q  361 ttattttatcttttattatagaaatagtttatacata 397  Q
    |||||||||||||| ||||| ||||||||||||||||    
T  17420179 ttattttatcttttcttataaaaatagtttatacata 17420143  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 361 - 397
Target Start/End: Complemental strand, 23895312 - 23895276
Alignment:
Q  361 ttattttatcttttattatagaaatagtttatacata 397  Q
    |||||||||||||| |||||||||||| |||||||||    
T  23895312 ttattttatcttttgttatagaaatagcttatacata 23895276  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 361 - 397
Target Start/End: Complemental strand, 26184727 - 26184691
Alignment:
Q  361 ttattttatcttttattatagaaatagtttatacata 397  Q
    |||||||| ||||| ||||||||||||||||||||||    
T  26184727 ttattttaccttttcttatagaaatagtttatacata 26184691  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 361 - 441
Target Start/End: Complemental strand, 34405012 - 34404932
Alignment:
Q  361 ttattttatcttttattatagaaatagtttatacatacctgcttatgctataagctccaaattaagttgtttatacaaaca 441  Q
    |||||||||||| | | | ||||| || |||| ||||  |||||| | |||||||| ||||||||||||||||| ||||||    
T  34405012 ttattttatcttgtgtaaaagaaacagcttattcataagtgcttacgttataagcttcaaattaagttgtttatccaaaca 34404932  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 361 - 397
Target Start/End: Complemental strand, 50319268 - 50319232
Alignment:
Q  361 ttattttatcttttattatagaaatagtttatacata 397  Q
    |||||||||||||| |||||||||||| |||||||||    
T  50319268 ttattttatcttttgttatagaaatagcttatacata 50319232  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 19)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 361 - 434
Target Start/End: Complemental strand, 11054162 - 11054089
Alignment:
Q  361 ttattttatcttttattatagaaatagtttatacatacctgcttatgctataagctccaaattaagttgtttat 434  Q
    ||||||||||||||||||||||||||| |||||||||   | |||||||||||||   ||||||||||||||||    
T  11054162 ttattttatcttttattatagaaatagcttatacataagcgtttatgctataagccggaaattaagttgtttat 11054089  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 366 - 441
Target Start/End: Complemental strand, 32928052 - 32927977
Alignment:
Q  366 ttatcttttattatagaaatagtttatacatacctgcttatgctataagctccaaattaagttgtttatacaaaca 441  Q
    ||||||||| ||||||||||| |||||||||    ||||||| |||||||| ||||||||||||||||| ||||||    
T  32928052 ttatcttttgttatagaaatactttatacattagcgcttatgatataagctgcaaattaagttgtttattcaaaca 32927977  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 379 - 432
Target Start/End: Original strand, 5390179 - 5390232
Alignment:
Q  379 tagaaatagtttatacatacctgcttatgctataagctccaaattaagttgttt 432  Q
    |||||||||||||| |||||  | |||||||||||||| |||||||||||||||    
T  5390179 tagaaatagtttattcatacgcgtttatgctataagctgcaaattaagttgttt 5390232  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 361 - 397
Target Start/End: Complemental strand, 35960390 - 35960354
Alignment:
Q  361 ttattttatcttttattatagaaatagtttatacata 397  Q
    |||||||||||||||||||||||||||||||| ||||    
T  35960390 ttattttatcttttattatagaaatagtttatgcata 35960354  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 361 - 397
Target Start/End: Original strand, 37063168 - 37063204
Alignment:
Q  361 ttattttatcttttattatagaaatagtttatacata 397  Q
    |||||||||||||| ||||||||||||||||||||||    
T  37063168 ttattttatcttttgttatagaaatagtttatacata 37063204  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 358 - 397
Target Start/End: Original strand, 12460091 - 12460130
Alignment:
Q  358 aacttattttatcttttattatagaaatagtttatacata 397  Q
    ||||||||||||||||| |||||||||||| |||||||||    
T  12460091 aacttattttatcttttgttatagaaatagcttatacata 12460130  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 402 - 443
Target Start/End: Complemental strand, 8089718 - 8089677
Alignment:
Q  402 cttatgctataagctccaaattaagttgtttatacaaacatg 443  Q
    |||||||||| |||| ||||||||||||||||| ||||||||    
T  8089718 cttatgctatgagctacaaattaagttgtttatccaaacatg 8089677  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 376 - 441
Target Start/End: Complemental strand, 9106786 - 9106721
Alignment:
Q  376 ttatagaaatagtttatacatacctgcttatgctataagctccaaattaagttgtttatacaaaca 441  Q
    |||||||||| | |||| ||||  |||||||||| |||||| |||| ||||||||||| |||||||    
T  9106786 ttatagaaattgcttattcataaatgcttatgctttaagctgcaaaataagttgtttacacaaaca 9106721  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 402 - 443
Target Start/End: Original strand, 10772029 - 10772070
Alignment:
Q  402 cttatgctataagctccaaattaagttgtttatacaaacatg 443  Q
    ||||||||||||||| ||||||||||||| ||| ||||||||    
T  10772029 cttatgctataagctgcaaattaagttgtatattcaaacatg 10772070  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 361 - 397
Target Start/End: Original strand, 5963376 - 5963412
Alignment:
Q  361 ttattttatcttttattatagaaatagtttatacata 397  Q
    ||||||||||||| |||||||||||||||| ||||||    
T  5963376 ttattttatctttcattatagaaatagtttgtacata 5963412  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 361 - 397
Target Start/End: Complemental strand, 6593276 - 6593240
Alignment:
Q  361 ttattttatcttttattatagaaatagtttatacata 397  Q
    |||||||||||||| |||||||||| |||||||||||    
T  6593276 ttattttatcttttgttatagaaattgtttatacata 6593240  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 361 - 397
Target Start/End: Original strand, 7096221 - 7096257
Alignment:
Q  361 ttattttatcttttattatagaaatagtttatacata 397  Q
    |||||||||||||| |||||||||||| |||||||||    
T  7096221 ttattttatcttttgttatagaaatagcttatacata 7096257  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 361 - 393
Target Start/End: Complemental strand, 7853634 - 7853602
Alignment:
Q  361 ttattttatcttttattatagaaatagtttata 393  Q
    |||||||||||||| ||||||||||||||||||    
T  7853634 ttattttatcttttgttatagaaatagtttata 7853602  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 361 - 397
Target Start/End: Original strand, 12407755 - 12407791
Alignment:
Q  361 ttattttatcttttattatagaaatagtttatacata 397  Q
    |||||||||||||| |||||||||||| |||||||||    
T  12407755 ttattttatcttttgttatagaaatagcttatacata 12407791  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 361 - 397
Target Start/End: Complemental strand, 12425547 - 12425511
Alignment:
Q  361 ttattttatcttttattatagaaatagtttatacata 397  Q
    ||||||||||||||| |||| ||||||||||||||||    
T  12425547 ttattttatcttttactatataaatagtttatacata 12425511  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 361 - 397
Target Start/End: Complemental strand, 13224405 - 13224369
Alignment:
Q  361 ttattttatcttttattatagaaatagtttatacata 397  Q
    |||||||||||||| |||||||||||| |||||||||    
T  13224405 ttattttatcttttgttatagaaatagcttatacata 13224369  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 361 - 397
Target Start/End: Original strand, 28586860 - 28586896
Alignment:
Q  361 ttattttatcttttattatagaaatagtttatacata 397  Q
    |||||||||||||| ||||||||||||| ||||||||    
T  28586860 ttattttatcttttgttatagaaatagtgtatacata 28586896  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 361 - 397
Target Start/End: Complemental strand, 34975354 - 34975318
Alignment:
Q  361 ttattttatcttttattatagaaatagtttatacata 397  Q
    |||||| ||||||| ||||||||||||||||||||||    
T  34975354 ttatttcatcttttgttatagaaatagtttatacata 34975318  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 364 - 396
Target Start/End: Complemental strand, 36638719 - 36638687
Alignment:
Q  364 ttttatcttttattatagaaatagtttatacat 396  Q
    ||||||||||| |||||||||||||||||||||    
T  36638719 ttttatcttttgttatagaaatagtttatacat 36638687  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 38; Significance: 0.000000000003; HSPs: 13)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 363 - 432
Target Start/End: Complemental strand, 30535537 - 30535468
Alignment:
Q  363 attttatcttttattatagaaatagtttatacatacctgcttatgctataagctccaaattaagttgttt 432  Q
    |||||||||||| |||||||| ||  |||||| ||  ||||||||||||||||| |||||||||||||||    
T  30535537 attttatcttttgttatagaagtaacttatacgtaagtgcttatgctataagctgcaaattaagttgttt 30535468  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 361 - 434
Target Start/End: Complemental strand, 12110336 - 12110263
Alignment:
Q  361 ttattttatcttttattatagaaatagtttatacatacctgcttatgctataagctccaaattaagttgtttat 434  Q
    |||||||||||| | | |||||||||| |||| ||||  ||||||||||||||| | ||||||||| |||||||    
T  12110336 ttattttatcttgtgtaatagaaataggttattcataagtgcttatgctataagttgcaaattaagctgtttat 12110263  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 367 - 441
Target Start/End: Complemental strand, 6824888 - 6824815
Alignment:
Q  367 tatcttttattatagaaatagtttatacatacctgcttatgctataagctccaaattaagttgtttatacaaaca 441  Q
    |||||||| |||||||||||| ||||||||| | | |||||||||||| | ||||||||  ||||||| ||||||    
T  6824888 tatcttttgttatagaaatagcttatacatagc-gtttatgctataaggtgcaaattaaactgtttatccaaaca 6824815  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 400 - 434
Target Start/End: Complemental strand, 7612380 - 7612346
Alignment:
Q  400 tgcttatgctataagctccaaattaagttgtttat 434  Q
    ||||||||||||||||| |||||||||||||||||    
T  7612380 tgcttatgctataagctgcaaattaagttgtttat 7612346  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 359 - 397
Target Start/End: Complemental strand, 33894601 - 33894563
Alignment:
Q  359 acttattttatcttttattatagaaatagtttatacata 397  Q
    |||||||||||||||| |||||||||||| |||||||||    
T  33894601 acttattttatcttttgttatagaaatagcttatacata 33894563  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 403 - 441
Target Start/End: Complemental strand, 40598505 - 40598467
Alignment:
Q  403 ttatgctataagctccaaattaagttgtttatacaaaca 441  Q
    ||||||||||| || ||||||||||||||||||||||||    
T  40598505 ttatgctataaacttcaaattaagttgtttatacaaaca 40598467  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 361 - 414
Target Start/End: Original strand, 36874059 - 36874112
Alignment:
Q  361 ttattttatcttttattatagaaatagtttatacatacctgcttatgctataag 414  Q
    |||||||||| ||| |||||||||||| |||||||||  ||||||||| |||||    
T  36874059 ttattttatcatttcttatagaaatagcttatacataagtgcttatgcaataag 36874112  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 361 - 397
Target Start/End: Complemental strand, 1417240 - 1417204
Alignment:
Q  361 ttattttatcttttattatagaaatagtttatacata 397  Q
    |||||||||||||| ||||| ||||||||||||||||    
T  1417240 ttattttatcttttgttatataaatagtttatacata 1417204  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 361 - 397
Target Start/End: Complemental strand, 15328582 - 15328546
Alignment:
Q  361 ttattttatcttttattatagaaatagtttatacata 397  Q
    ||||||||||||||||||||||||||| |||| ||||    
T  15328582 ttattttatcttttattatagaaatagattatgcata 15328546  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 361 - 397
Target Start/End: Complemental strand, 30496680 - 30496644
Alignment:
Q  361 ttattttatcttttattatagaaatagtttatacata 397  Q
    ||||||||| |||| ||||||||||||||||||||||    
T  30496680 ttattttatattttgttatagaaatagtttatacata 30496644  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 401 - 441
Target Start/End: Original strand, 31002952 - 31002992
Alignment:
Q  401 gcttatgctataagctccaaattaagttgtttatacaaaca 441  Q
    |||||||||||||| | ||||||||||||||||| ||||||    
T  31002952 gcttatgctataagatgcaaattaagttgtttatccaaaca 31002992  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 403 - 439
Target Start/End: Complemental strand, 32156927 - 32156891
Alignment:
Q  403 ttatgctataagctccaaattaagttgtttatacaaa 439  Q
    |||||||||||||| ||||||||||||||||| ||||    
T  32156927 ttatgctataagctgcaaattaagttgtttatccaaa 32156891  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 361 - 397
Target Start/End: Original strand, 48157214 - 48157250
Alignment:
Q  361 ttattttatcttttattatagaaatagtttatacata 397  Q
    ||||||||||||||||||||||||||  |||||||||    
T  48157214 ttattttatcttttattatagaaataagttatacata 48157250  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 36; Significance: 0.00000000005; HSPs: 8)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 361 - 416
Target Start/End: Original strand, 2128345 - 2128400
Alignment:
Q  361 ttattttatcttttattatagaaatagtttatacatacctgcttatgctataagct 416  Q
    |||||||||||||| |||||||||||| |||||||||   ||||||||||||||||    
T  2128345 ttattttatcttttgttatagaaatagcttatacataaacgcttatgctataagct 2128400  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 361 - 397
Target Start/End: Original strand, 35394795 - 35394831
Alignment:
Q  361 ttattttatcttttattatagaaatagtttatacata 397  Q
    ||||||||||||||||||||||||||| |||||||||    
T  35394795 ttattttatcttttattatagaaatagattatacata 35394831  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 362 - 397
Target Start/End: Original strand, 2304336 - 2304371
Alignment:
Q  362 tattttatcttttattatagaaatagtttatacata 397  Q
    |||||||||||||||||||||||||| |||||||||    
T  2304336 tattttatcttttattatagaaatagcttatacata 2304371  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 402 - 441
Target Start/End: Complemental strand, 37138281 - 37138242
Alignment:
Q  402 cttatgctataagctccaaattaagttgtttatacaaaca 441  Q
    ||||||||||||||| ||||||||||||||||| ||||||    
T  37138281 cttatgctataagcttcaaattaagttgtttatccaaaca 37138242  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 364 - 441
Target Start/End: Complemental strand, 44014253 - 44014176
Alignment:
Q  364 ttttatcttttattatagaaatagtttatacatacctgcttatgctataagctccaaattaagttgtttatacaaaca 441  Q
    ||||||||||  |||||||||||| |||||||||  || |||||||||| ||| |||| |||||  ||||| ||||||    
T  44014253 ttttatctttagttatagaaatagcttatacataagtggttatgctataggctgcaaaataagtcatttatccaaaca 44014176  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 361 - 397
Target Start/End: Complemental strand, 1395647 - 1395611
Alignment:
Q  361 ttattttatcttttattatagaaatagtttatacata 397  Q
    |||||||||||||| |||||||||||| |||||||||    
T  1395647 ttattttatcttttgttatagaaatagcttatacata 1395611  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 361 - 441
Target Start/End: Original strand, 24235777 - 24235857
Alignment:
Q  361 ttattttatcttttattatagaaatagtttatacatacctgcttatgctataagctccaaattaagttgtttatacaaaca 441  Q
    |||| ||||||||| |||||||||||  ||||||| |  |||||||| ||||| | |  ||||||||||||||| ||||||    
T  24235777 ttatattatcttttgttatagaaataacttatacacaagtgcttatgttataaacacttaattaagttgtttatccaaaca 24235857  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 361 - 397
Target Start/End: Complemental strand, 32703114 - 32703078
Alignment:
Q  361 ttattttatcttttattatagaaatagtttatacata 397  Q
    |||||||||||||||| |||||||||| |||||||||    
T  32703114 ttattttatcttttataatagaaatagcttatacata 32703078  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 35; Significance: 0.0000000002; HSPs: 15)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 363 - 421
Target Start/End: Complemental strand, 13459620 - 13459562
Alignment:
Q  363 attttatcttttattatagaaatagtttatacatacctgcttatgctataagctccaaa 421  Q
    |||||||||||||| |||||||||| |||||||||  ||||||||||||| ||| ||||    
T  13459620 attttatcttttatcatagaaatagcttatacataattgcttatgctatacgctgcaaa 13459562  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 402 - 443
Target Start/End: Complemental strand, 2840278 - 2840237
Alignment:
Q  402 cttatgctataagctccaaattaagttgtttatacaaacatg 443  Q
    ||||||||||||||| |||| |||||||||||||||||||||    
T  2840278 cttatgctataagctgcaaaataagttgtttatacaaacatg 2840237  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 402 - 443
Target Start/End: Complemental strand, 2844965 - 2844924
Alignment:
Q  402 cttatgctataagctccaaattaagttgtttatacaaacatg 443  Q
    ||||||||||||||| |||| |||||||||||||||||||||    
T  2844965 cttatgctataagctgcaaaataagttgtttatacaaacatg 2844924  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 361 - 397
Target Start/End: Complemental strand, 4558774 - 4558738
Alignment:
Q  361 ttattttatcttttattatagaaatagtttatacata 397  Q
    ||||||||||||||||||||||||||| |||||||||    
T  4558774 ttattttatcttttattatagaaatagcttatacata 4558738  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 361 - 397
Target Start/End: Complemental strand, 14482178 - 14482142
Alignment:
Q  361 ttattttatcttttattatagaaatagtttatacata 397  Q
    |||||||||||||| ||||||||||||||||||||||    
T  14482178 ttattttatcttttgttatagaaatagtttatacata 14482142  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 361 - 397
Target Start/End: Original strand, 39392755 - 39392791
Alignment:
Q  361 ttattttatcttttattatagaaatagtttatacata 397  Q
    |||||||||||||| ||||||||||||||||||||||    
T  39392755 ttattttatcttttgttatagaaatagtttatacata 39392791  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 361 - 396
Target Start/End: Original strand, 1470950 - 1470985
Alignment:
Q  361 ttattttatcttttattatagaaatagtttatacat 396  Q
    ||||||||||||||||||||||||||| ||||||||    
T  1470950 ttattttatcttttattatagaaatagcttatacat 1470985  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 403 - 445
Target Start/End: Complemental strand, 2482780 - 2482738
Alignment:
Q  403 ttatgctataagctccaaattaagttgtttatacaaacatgtc 445  Q
    |||||||||||||| ||||||||| ||||||| ||||||||||    
T  2482780 ttatgctataagcttcaaattaagctgtttatccaaacatgtc 2482738  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 355 - 397
Target Start/End: Complemental strand, 10114472 - 10114430
Alignment:
Q  355 ttcaacttattttatcttttattatagaaatagtttatacata 397  Q
    ||||||||||||||||||||  ||||||||||| |||||||||    
T  10114472 ttcaacttattttatcttttgctatagaaatagcttatacata 10114430  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 361 - 443
Target Start/End: Original strand, 37152984 - 37153066
Alignment:
Q  361 ttattttatcttttattatagaaatagtttatacatacctgcttatgctataagctccaaattaagttgtttatacaaacatg 443  Q
    |||||||||  ||| |||||||||||  |||||||||   |||||| ||||||| | |||||||||||||| || ||||||||    
T  37152984 ttattttatactttgttatagaaatatattatacataagcgcttatcctataagttgcaaattaagttgttaatccaaacatg 37153066  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 364 - 441
Target Start/End: Original strand, 16163375 - 16163452
Alignment:
Q  364 ttttatcttttattatagaaatagtttatacatacctgcttatgctataagctccaaattaagttgtttatacaaaca 441  Q
    ||||||||||  |||||||||||| |||||||||  || |||||||||| ||| |||| |||||  ||||| ||||||    
T  16163375 ttttatctttagttatagaaatagcttatacataagtggttatgctataggctgcaaaataagtcatttatccaaaca 16163452  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 402 - 443
Target Start/End: Original strand, 44426538 - 44426579
Alignment:
Q  402 cttatgctataagctccaaattaagttgtttatacaaacatg 443  Q
    ||||||||||||||| ||||||||||||||||  ||||||||    
T  44426538 cttatgctataagctgcaaattaagttgtttacccaaacatg 44426579  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 361 - 397
Target Start/End: Complemental strand, 26215472 - 26215436
Alignment:
Q  361 ttattttatcttttattatagaaatagtttatacata 397  Q
    |||||||||||||| |||||||||||| |||||||||    
T  26215472 ttattttatcttttgttatagaaatagcttatacata 26215436  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 401 - 441
Target Start/End: Original strand, 31118858 - 31118898
Alignment:
Q  401 gcttatgctataagctccaaattaagttgtttatacaaaca 441  Q
    |||||||||||||||| || |||||||||||||| ||||||    
T  31118858 gcttatgctataagctgcacattaagttgtttatccaaaca 31118898  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 361 - 397
Target Start/End: Complemental strand, 42597377 - 42597341
Alignment:
Q  361 ttattttatcttttattatagaaatagtttatacata 397  Q
    |||||||||||||| |||||||||||| |||||||||    
T  42597377 ttattttatcttttgttatagaaatagcttatacata 42597341  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 34; Significance: 0.0000000007; HSPs: 18)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 401 - 442
Target Start/End: Complemental strand, 26883915 - 26883874
Alignment:
Q  401 gcttatgctataagctccaaattaagttgtttatacaaacat 442  Q
    |||||||||||| ||| |||||||||||||||||||||||||    
T  26883915 gcttatgctatatgctgcaaattaagttgtttatacaaacat 26883874  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 361 - 441
Target Start/End: Original strand, 21593105 - 21593185
Alignment:
Q  361 ttattttatcttttattatagaaatagtttatacatacctgcttatgctataagctccaaattaagttgtttatacaaaca 441  Q
    |||||||||||||  ||||||||||||||||||||||    |||| ||||||||| || |||| ||||| |||| ||||||    
T  21593105 ttattttatctttagttatagaaatagtttatacataagcacttacgctataagcacctaattcagttgcttatccaaaca 21593185  T

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Target: chr4; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 403 - 443
Target Start/End: Complemental strand, 50298449 - 50298409
Alignment:
Q  403 ttatgctataagctccaaattaagttgtttatacaaacatg 443  Q
    |||||||||||||| ||||||||||||||||| ||||||||    
T  50298449 ttatgctataagcttcaaattaagttgtttatccaaacatg 50298409  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 403 - 441
Target Start/End: Complemental strand, 43824219 - 43824181
Alignment:
Q  403 ttatgctataagctccaaattaagttgtttatacaaaca 441  Q
    |||||||||||||| |||||||||||||||| |||||||    
T  43824219 ttatgctataagctgcaaattaagttgtttaaacaaaca 43824181  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 363 - 397
Target Start/End: Original strand, 45128406 - 45128440
Alignment:
Q  363 attttatcttttattatagaaatagtttatacata 397  Q
    |||||||||||| ||||||||||||||||||||||    
T  45128406 attttatcttttgttatagaaatagtttatacata 45128440  T

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Target: chr4; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 360 - 393
Target Start/End: Complemental strand, 1404399 - 1404366
Alignment:
Q  360 cttattttatcttttattatagaaatagtttata 393  Q
    |||||||||||||||||||||||||||| |||||    
T  1404399 cttattttatcttttattatagaaatagcttata 1404366  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 361 - 406
Target Start/End: Complemental strand, 3155579 - 3155534
Alignment:
Q  361 ttattttatcttttattatagaaatagtttatacatacctgcttat 406  Q
    ||||||||||||||  ||||||||||| |||||||||| |||||||    
T  3155579 ttattttatcttttgctatagaaatagcttatacatacatgcttat 3155534  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 361 - 406
Target Start/End: Complemental strand, 6364125 - 6364080
Alignment:
Q  361 ttattttatcttttattatagaaatagtttatacatacctgcttat 406  Q
    |||||||||||||| |||||||||||| |||||||||  |||||||    
T  6364125 ttattttatcttttgttatagaaatagcttatacataagtgcttat 6364080  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 361 - 394
Target Start/End: Complemental strand, 30770859 - 30770826
Alignment:
Q  361 ttattttatcttttattatagaaatagtttatac 394  Q
    |||||||||||||||||||| |||||||||||||    
T  30770859 ttattttatcttttattataaaaatagtttatac 30770826  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 404 - 441
Target Start/End: Complemental strand, 54214932 - 54214895
Alignment:
Q  404 tatgctataagctccaaattaagttgtttatacaaaca 441  Q
    ||||||||||||| ||||||||||||||||| ||||||    
T  54214932 tatgctataagctgcaaattaagttgtttatccaaaca 54214895  T

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Target: chr4; HSP #11
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 361 - 397
Target Start/End: Complemental strand, 9680640 - 9680604
Alignment:
Q  361 ttattttatcttttattatagaaatagtttatacata 397  Q
    ||||||||||||||||||| ||||||| |||||||||    
T  9680640 ttattttatcttttattatcgaaatagcttatacata 9680604  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 361 - 397
Target Start/End: Complemental strand, 11264277 - 11264241
Alignment:
Q  361 ttattttatcttttattatagaaatagtttatacata 397  Q
    ||||||||||||||||||  |||||||||||||||||    
T  11264277 ttattttatcttttattagtgaaatagtttatacata 11264241  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 361 - 397
Target Start/End: Original strand, 21683573 - 21683609
Alignment:
Q  361 ttattttatcttttattatagaaatagtttatacata 397  Q
    |||| ||||||||| ||||||||||||||||||||||    
T  21683573 ttatcttatcttttgttatagaaatagtttatacata 21683609  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 339 - 367
Target Start/End: Original strand, 28300303 - 28300331
Alignment:
Q  339 atgttcttaagttgttttcaacttatttt 367  Q
    |||||||||||||||||||||||||||||    
T  28300303 atgttcttaagttgttttcaacttatttt 28300331  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 401 - 441
Target Start/End: Original strand, 30066916 - 30066956
Alignment:
Q  401 gcttatgctataagctccaaattaagttgtttatacaaaca 441  Q
    |||||||||||||||| |||||||| |||||||| ||||||    
T  30066916 gcttatgctataagctgcaaattaaattgtttatgcaaaca 30066956  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 361 - 397
Target Start/End: Original strand, 30338686 - 30338722
Alignment:
Q  361 ttattttatcttttattatagaaatagtttatacata 397  Q
    ||||| |||||||| ||||||||||||||||||||||    
T  30338686 ttattctatcttttgttatagaaatagtttatacata 30338722  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 401 - 441
Target Start/End: Complemental strand, 47771916 - 47771876
Alignment:
Q  401 gcttatgctataagctccaaattaagttgtttatacaaaca 441  Q
    ||||||||||||||||||||| |||| ||||||| ||||||    
T  47771916 gcttatgctataagctccaaaataagctgtttatccaaaca 47771876  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 361 - 397
Target Start/End: Original strand, 51044553 - 51044589
Alignment:
Q  361 ttattttatcttttattatagaaatagtttatacata 397  Q
    |||||||||||||| |||||||||||| |||||||||    
T  51044553 ttattttatcttttgttatagaaatagcttatacata 51044589  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 33; Significance: 0.000000003; HSPs: 6)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 361 - 397
Target Start/End: Complemental strand, 2514678 - 2514642
Alignment:
Q  361 ttattttatcttttattatagaaatagtttatacata 397  Q
    ||||||||||||||||||||||||||| |||||||||    
T  2514678 ttattttatcttttattatagaaatagcttatacata 2514642  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 361 - 396
Target Start/End: Complemental strand, 781361 - 781326
Alignment:
Q  361 ttattttatcttttattatagaaatagtttatacat 396  Q
    ||||||||||||||||||||||||||| ||||||||    
T  781361 ttattttatcttttattatagaaatagcttatacat 781326  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 361 - 396
Target Start/End: Complemental strand, 7354180 - 7354145
Alignment:
Q  361 ttattttatcttttattatagaaatagtttatacat 396  Q
    |||||||||||||| |||||||||||||||||||||    
T  7354180 ttattttatcttttgttatagaaatagtttatacat 7354145  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 358 - 395
Target Start/End: Complemental strand, 31624237 - 31624200
Alignment:
Q  358 aacttattttatcttttattatagaaatagtttataca 395  Q
    ||||||||||||||||| |||||||||||| |||||||    
T  31624237 aacttattttatcttttgttatagaaatagcttataca 31624200  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 361 - 397
Target Start/End: Complemental strand, 507196 - 507160
Alignment:
Q  361 ttattttatcttttattatagaaatagtttatacata 397  Q
    |||||||||||||| ||||||||||| ||||||||||    
T  507196 ttattttatcttttgttatagaaataatttatacata 507160  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 401 - 441
Target Start/End: Original strand, 7946023 - 7946063
Alignment:
Q  401 gcttatgctataagctccaaattaagttgtttatacaaaca 441  Q
    |||||||||||||||| |||| |||||||||||| ||||||    
T  7946023 gcttatgctataagctacaaaataagttgtttatccaaaca 7946063  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 33; Significance: 0.000000003; HSPs: 14)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 361 - 397
Target Start/End: Complemental strand, 37034020 - 37033984
Alignment:
Q  361 ttattttatcttttattatagaaatagtttatacata 397  Q
    |||||||||||||| ||||||||||||||||||||||    
T  37034020 ttattttatctttttttatagaaatagtttatacata 37033984  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 361 - 440
Target Start/End: Complemental strand, 4090325 - 4090246
Alignment:
Q  361 ttattttatcttttattatagaaatagtttatacatacctgcttatgctataagctccaaattaagttgtttatacaaac 440  Q
    |||||||||||| | |||| ||||||| |||| |||||   |||||||| |||||| |||| |||||||||||| |||||    
T  4090325 ttattttatcttgtgttatggaaatagcttattcatacacccttatgctttaagcttcaaaataagttgtttatccaaac 4090246  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 364 - 443
Target Start/End: Complemental strand, 7936999 - 7936920
Alignment:
Q  364 ttttatcttttattatagaaatagtttatacatacctgcttatgctataagctccaaattaagttgtttatacaaacatg 443  Q
    ||||||||||| |||||||||| |||||||||||    |||||| || |||| |  ||||||||||||||| ||||||||    
T  7936999 ttttatcttttgttatagaaatggtttatacataagcacttatgttaaaagcacttaattaagttgtttatccaaacatg 7936920  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 403 - 441
Target Start/End: Complemental strand, 40158682 - 40158644
Alignment:
Q  403 ttatgctataagctccaaattaagttgtttatacaaaca 441  Q
    |||||||||||||| ||||||||||||||||| ||||||    
T  40158682 ttatgctataagctacaaattaagttgtttatccaaaca 40158644  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 401 - 434
Target Start/End: Complemental strand, 39866510 - 39866477
Alignment:
Q  401 gcttatgctataagctccaaattaagttgtttat 434  Q
    ||||||||||||||||| ||||||||||||||||    
T  39866510 gcttatgctataagctctaaattaagttgtttat 39866477  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 361 - 406
Target Start/End: Complemental strand, 42457924 - 42457879
Alignment:
Q  361 ttattttatcttttattatagaaatagtttatacatacctgcttat 406  Q
    ||||||||||||||| ||||||||||| |||||||||  |||||||    
T  42457924 ttattttatcttttactatagaaatagattatacataaatgcttat 42457879  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 385 - 441
Target Start/End: Original strand, 450005 - 450061
Alignment:
Q  385 tagtttatacatacctgcttatgctataagctccaaattaagttgtttatacaaaca 441  Q
    |||||||||||||   |||||||||||||||| ||| |||| |||||||| ||||||    
T  450005 tagtttatacataagcgcttatgctataagctgcaacttaaattgtttatccaaaca 450061  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 361 - 397
Target Start/End: Complemental strand, 5133748 - 5133712
Alignment:
Q  361 ttattttatcttttattatagaaatagtttatacata 397  Q
    |||||||||||||| |||||||||||| |||||||||    
T  5133748 ttattttatcttttgttatagaaatagcttatacata 5133712  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 361 - 397
Target Start/End: Complemental strand, 10150731 - 10150695
Alignment:
Q  361 ttattttatcttttattatagaaatagtttatacata 397  Q
    ||||||||||||||||||||||||||  |||||||||    
T  10150731 ttattttatcttttattatagaaataacttatacata 10150695  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 361 - 397
Target Start/End: Complemental strand, 12215783 - 12215747
Alignment:
Q  361 ttattttatcttttattatagaaatagtttatacata 397  Q
    |||||||||||||| || |||||||||||||||||||    
T  12215783 ttattttatcttttgttgtagaaatagtttatacata 12215747  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 361 - 397
Target Start/End: Complemental strand, 25609772 - 25609736
Alignment:
Q  361 ttattttatcttttattatagaaatagtttatacata 397  Q
    |||||||||||||| |||||||||||| |||||||||    
T  25609772 ttattttatcttttcttatagaaatagcttatacata 25609736  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 361 - 397
Target Start/End: Original strand, 26522718 - 26522754
Alignment:
Q  361 ttattttatcttttattatagaaatagtttatacata 397  Q
    ||||| |||||||| ||||||||||||||||||||||    
T  26522718 ttattatatcttttgttatagaaatagtttatacata 26522754  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 401 - 441
Target Start/End: Original strand, 28039466 - 28039506
Alignment:
Q  401 gcttatgctataagctccaaattaagttgtttatacaaaca 441  Q
    ||||||||||||| || ||||||||||||||||| ||||||    
T  28039466 gcttatgctataaactgcaaattaagttgtttatccaaaca 28039506  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 361 - 397
Target Start/End: Original strand, 41809337 - 41809373
Alignment:
Q  361 ttattttatcttttattatagaaatagtttatacata 397  Q
    ||||||| |||||| ||||||||||||||||||||||    
T  41809337 ttattttttcttttgttatagaaatagtttatacata 41809373  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0590 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: scaffold0590
Description:

Target: scaffold0590; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 361 - 397
Target Start/End: Original strand, 1168 - 1204
Alignment:
Q  361 ttattttatcttttattatagaaatagtttatacata 397  Q
    |||||||||||||| |||||||||||| |||||||||    
T  1168 ttattttatcttttgttatagaaatagcttatacata 1204  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0275 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: scaffold0275
Description:

Target: scaffold0275; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 361 - 397
Target Start/End: Complemental strand, 2807 - 2771
Alignment:
Q  361 ttattttatcttttattatagaaatagtttatacata 397  Q
    |||||||||||||| |||||||||||| |||||||||    
T  2807 ttattttatcttttgttatagaaatagcttatacata 2771  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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