View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15958_low_4 (Length: 408)
Name: NF15958_low_4
Description: NF15958
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15958_low_4 |
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Alignment Details
Target: chr6 (Bit Score: 297; Significance: 1e-167; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 297; E-Value: 1e-167
Query Start/End: Original strand, 17 - 393
Target Start/End: Complemental strand, 9546034 - 9545659
Alignment:
| Q |
17 |
acaaaattatcttcaacttgttattttcatcaagttaatttgcagctaatataaatctttcaaaattatttctcctaatgttttctatacttgagatctt |
116 |
Q |
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| T |
9546034 |
acaaaattatcttcaacttgttattttcatcaagttaatttgcagctaatataaatctttcaaaattatttctcctaatgttttctatacttgagatctt |
9545935 |
T |
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| Q |
117 |
tgcaactgttccaatcgcattgggatagtagaatcaaaatgagtgctttgtgggttctctgcataagcaacatagtaagcagagacacatgcttgtggac |
216 |
Q |
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| T |
9545934 |
tgcaactgttccaatcgcattgggatagtagagtcaaaatgagtgctttgtgggttctctgcataagcaacatagtaagcagagacacatgcttgtggac |
9545835 |
T |
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| Q |
217 |
atgccaaagccaatcgaacctgcacaatataaagttaaatatgtttgtagtccttnnnnnnntattgacatatgttaattttggtttctataagaatttc |
316 |
Q |
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| T |
9545834 |
atgccaaagccaatcgaacctgcacaatataaagttaaatatgtttatagttctt-aaaaaatattgagatatattaattttggtttctataagaatttc |
9545736 |
T |
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| Q |
317 |
gtgtggatggattaagtacttgaaatgcaa----aagtgcttttagtcttaatgagtgactgatgaaggattaaaaatata |
393 |
Q |
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| T |
9545735 |
gtg----tggattaagtccttgaaatgcaaaactaagtgcttttagtcttaatgagtgactgatgaaggattaaaaatata |
9545659 |
T |
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Target: chr7 (Bit Score: 36; Significance: 0.00000000004; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 150 - 229
Target Start/End: Original strand, 33708911 - 33708990
Alignment:
| Q |
150 |
tcaaaatgagtgctttgtgggttctctgcataagcaacatagtaagcagagacacatgcttgtggacatgccaaagccaa |
229 |
Q |
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| T |
33708911 |
tcaaattgagtgctctgtgggttctctgcgtatgccacatagtaagccgaaacgcatgcttgtggccatgcaatagccaa |
33708990 |
T |
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