View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15958_low_7 (Length: 237)
Name: NF15958_low_7
Description: NF15958
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15958_low_7 |
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Alignment Details
Target: chr3 (Bit Score: 199; Significance: 1e-108; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 199; E-Value: 1e-108
Query Start/End: Original strand, 4 - 221
Target Start/End: Complemental strand, 403268 - 403050
Alignment:
| Q |
4 |
ttatttgatcatataataagaattaaacattgtttggacatgaacaaattatttaagcttatgtatgagatttttgc-aatttttgcaattaattgttag |
102 |
Q |
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| T |
403268 |
ttatttgatcatataataagaattaaacattgtttggacatgaacaaattatttaagcttatgtatgagatttttgccaatttttgcaattaattgttag |
403169 |
T |
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| Q |
103 |
gttgaaatatttcaactttagcagggtttgaatttggatcctttaactcatttaactgttagctcaaattagttgagctacccaaccacatgcttatgta |
202 |
Q |
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| T |
403168 |
gttgatatatttcaactttagctgggtttgaatttggatcctttaactcatttaactgttagctcaaattagttgagctacccaaccacatgcttatgta |
403069 |
T |
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| Q |
203 |
taataacagaagataaaat |
221 |
Q |
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| T |
403068 |
tcataacagaagataaaat |
403050 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 161 - 189
Target Start/End: Original strand, 28308463 - 28308491
Alignment:
| Q |
161 |
ttagctcaaattagttgagctacccaacc |
189 |
Q |
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| T |
28308463 |
ttagctcaaattagttgagctacccaacc |
28308491 |
T |
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