View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15959_high_3 (Length: 364)
Name: NF15959_high_3
Description: NF15959
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15959_high_3 |
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| [»] scaffold0024 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 318; Significance: 1e-179; HSPs: 10)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 318; E-Value: 1e-179
Query Start/End: Original strand, 1 - 334
Target Start/End: Original strand, 30264431 - 30264764
Alignment:
| Q |
1 |
agtgcatgatgaagtttgaatattatggtgtaagcagcattgcttgttggatacttgataacatgtatttcccaaaggggtttgtcttttggtgtccttt |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30264431 |
agtgcatgatgaagtttgaatattatggtgtaagcagcattgcttgttggatacttgataacatgtatttcccaaaggggtttgtcttttggtgtccttt |
30264530 |
T |
|
| Q |
101 |
ctattaatatctttgacacatagtcatcaaaatcatgatcatagaattcaattgactcatttttagggaacactggaaccttaaaatgatcttttggatt |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30264531 |
ctattaatatctttgacacatagtcatcaaaatcttgatcatagaattcaattgactcatttttagggaacactggaaccttaaaatgatcttttggatt |
30264630 |
T |
|
| Q |
201 |
aacctctacttttttccatttcatatttccatctttatctctcacctatatacatggttgcatgcacatgcacatgttaatatttgttatatgatagata |
300 |
Q |
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|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||| |
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| T |
30264631 |
tacctctacttttttccatttcatatttccatctttatctctcacctatatacatggttgcatgcatatgcacatgttaatatttgttatatgataaata |
30264730 |
T |
|
| Q |
301 |
tgtaaggaaatataaacactaaaacacataaaaa |
334 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| |
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|
| T |
30264731 |
tgtaaggaaatataaacactaaaacacataaaaa |
30264764 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 318; E-Value: 1e-179
Query Start/End: Original strand, 1 - 334
Target Start/End: Complemental strand, 30287757 - 30287424
Alignment:
| Q |
1 |
agtgcatgatgaagtttgaatattatggtgtaagcagcattgcttgttggatacttgataacatgtatttcccaaaggggtttgtcttttggtgtccttt |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
30287757 |
agtgcatgatgaagtttgaatattatggtgtaagcagcattgcttgttggatacttgataacatgtatttcccaaaggggtttgtcttttggtgtccttt |
30287658 |
T |
|
| Q |
101 |
ctattaatatctttgacacatagtcatcaaaatcatgatcatagaattcaattgactcatttttagggaacactggaaccttaaaatgatcttttggatt |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
30287657 |
ctattaatatctttgacacatagtcatcaaaatcttgatcatagaattcaattgactcatttttagggaacactggaaccttaaaatgatcttttggatt |
30287558 |
T |
|
| Q |
201 |
aacctctacttttttccatttcatatttccatctttatctctcacctatatacatggttgcatgcacatgcacatgttaatatttgttatatgatagata |
300 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||| |
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|
| T |
30287557 |
tacctctacttttttccatttcatatttccatctttatctctcacctatatacatggttgcatgcatatgcacatgttaatatttgttatatgataaata |
30287458 |
T |
|
| Q |
301 |
tgtaaggaaatataaacactaaaacacataaaaa |
334 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| |
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|
| T |
30287457 |
tgtaaggaaatataaacactaaaacacataaaaa |
30287424 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 89; E-Value: 8e-43
Query Start/End: Original strand, 36 - 252
Target Start/End: Original strand, 30271360 - 30271576
Alignment:
| Q |
36 |
agcattgcttgttggatacttgataacatgtatttcccaaaggggtttgtcttttggtgtcctttctattaatatctttgacacatagtcatcaaaatca |
135 |
Q |
| |
|
|||||| ||||||||||| || || | ||||||||||||||| |||||||||| |||||| ||||| || | |||||||||||||| |||||||||| |
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|
| T |
30271360 |
agcatttcttgttggatatttaattaaatgtatttcccaaagtggtttgtcttgtggtgttctttccatcataatctttgacacataatcatcaaaatat |
30271459 |
T |
|
| Q |
136 |
tgatcatagaattcaattgactcatttttagggaacactggaaccttaaaatgatcttttggattaacctctacttttttccatttcatatttccatctt |
235 |
Q |
| |
|
|||||||| ||||||||||| ||| |||||||||| | |||||| | | |||||||| || || |||||||| |||||||||||||| || ||||||| |
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|
| T |
30271460 |
tgatcatacaattcaattgattcacttttagggaatattggaacgtgcatatgatcttcaggcttcacctctacctttttccatttcattttgccatctt |
30271559 |
T |
|
| Q |
236 |
tatctctcacctatata |
252 |
Q |
| |
|
| ||||||||||||||| |
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|
| T |
30271560 |
tgtctctcacctatata |
30271576 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 36 - 252
Target Start/End: Complemental strand, 30280829 - 30280613
Alignment:
| Q |
36 |
agcattgcttgttggatacttgataacatgtatttcccaaaggggtttgtcttttggtgtcctttctattaatatctttgacacatagtcatcaaaatca |
135 |
Q |
| |
|
|||||||||||||||||| || || | ||| ||||||||||| |||||||||| |||||| ||||| || | |||||||||||||| |||||||||| |
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|
| T |
30280829 |
agcattgcttgttggatatttaattaaatgcatttcccaaagtggtttgtcttgtggtgttctttccatcataatctttgacacataatcatcaaaatat |
30280730 |
T |
|
| Q |
136 |
tgatcatagaattcaattgactcatttttagggaacactggaaccttaaaatgatcttttggattaacctctacttttttccatttcatatttccatctt |
235 |
Q |
| |
|
|||||||| ||||||||||| ||| |||||||||| | ||||||||| | |||||||| || || |||||| ||||||||| |||| || ||||||| |
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|
| T |
30280729 |
tgatcatacaattcaattgattcacttttagggaatattggaaccttcatatgatcttcaggcttcgcctctatttttttccacatcattttgccatctt |
30280630 |
T |
|
| Q |
236 |
tatctctcacctatata |
252 |
Q |
| |
|
|||||||||||||||| |
|
|
| T |
30280629 |
gatctctcacctatata |
30280613 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 36 - 252
Target Start/End: Original strand, 30304427 - 30304643
Alignment:
| Q |
36 |
agcattgcttgttggatacttgataacatgtatttcccaaaggggtttgtcttttggtgtcctttctattaatatctttgacacatagtcatcaaaatca |
135 |
Q |
| |
|
|||||||||||||||||| || || | ||| ||||||||||| |||||||||| |||||| ||||| || | |||||||||||||| |||||||||| |
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|
| T |
30304427 |
agcattgcttgttggatatttaattaaatgcatttcccaaagtggtttgtcttgtggtgttctttccatcataatctttgacacataatcatcaaaatat |
30304526 |
T |
|
| Q |
136 |
tgatcatagaattcaattgactcatttttagggaacactggaaccttaaaatgatcttttggattaacctctacttttttccatttcatatttccatctt |
235 |
Q |
| |
|
|||||||| ||||||||||| ||| |||||||||| | ||||||||| | |||||||| || || |||||| ||||||||| |||| || ||||||| |
|
|
| T |
30304527 |
tgatcatacaattcaattgattcacttttagggaatattggaaccttcatatgatcttcaggcttcgcctctatttttttccacatcattttgccatctt |
30304626 |
T |
|
| Q |
236 |
tatctctcacctatata |
252 |
Q |
| |
|
|||||||||||||||| |
|
|
| T |
30304627 |
gatctctcacctatata |
30304643 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 5 - 95
Target Start/End: Original strand, 30048633 - 30048723
Alignment:
| Q |
5 |
catgatgaagtttgaatattatggtgtaagcagcattgcttgttggatacttgataacatgtatttcccaaaggggtttgtcttttggtgt |
95 |
Q |
| |
|
|||||||||||||||||||||||||| ||||||||||| |||||||||| ||||||||||| ||||||||||| ||||| |||| |||||| |
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|
| T |
30048633 |
catgatgaagtttgaatattatggtgcaagcagcattggttgttggataattgataacatgaatttcccaaagtggtttatcttgtggtgt |
30048723 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #7
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 5 - 95
Target Start/End: Original strand, 30062974 - 30063064
Alignment:
| Q |
5 |
catgatgaagtttgaatattatggtgtaagcagcattgcttgttggatacttgataacatgtatttcccaaaggggtttgtcttttggtgt |
95 |
Q |
| |
|
|||||||||||||||||||||||||| ||||||||||| |||||||||| ||||||||||| ||||||||||| ||||| |||| |||||| |
|
|
| T |
30062974 |
catgatgaagtttgaatattatggtgcaagcagcattggttgttggataattgataacatgaatttcccaaagtggtttatcttgtggtgt |
30063064 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #8
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 1 - 101
Target Start/End: Original strand, 30032383 - 30032483
Alignment:
| Q |
1 |
agtgcatgatgaagtttgaatattatggtgtaagcagcattgcttgttggatacttgataacatgtatttcccaaaggggtttgtcttttggtgtccttt |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||| |||| ||||| |||||||||| ||||||| ||| ||||||||||| ||||| |||| |||||| |||| |
|
|
| T |
30032383 |
agtgcatgatgaagtttgaatattatggtgcaagcttcattggttgttggataattgataatatgaatttcccaaagtggtttatcttgtggtgttcttt |
30032482 |
T |
|
| Q |
101 |
c |
101 |
Q |
| |
|
| |
|
|
| T |
30032483 |
c |
30032483 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #9
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 1 - 83
Target Start/End: Original strand, 30228768 - 30228850
Alignment:
| Q |
1 |
agtgcatgatgaagtttgaatattatggtgtaagcagcattgcttgttggatacttgataacatgtatttcccaaaggggttt |
83 |
Q |
| |
|
|||||||||| ||||||||||||||||||| ||||||||||| |||||||||| ||||||| ||| ||||||||||| ||||| |
|
|
| T |
30228768 |
agtgcatgattaagtttgaatattatggtgcaagcagcattggttgttggataattgataatatgaatttcccaaagtggttt |
30228850 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #10
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 36 - 88
Target Start/End: Complemental strand, 30220261 - 30220209
Alignment:
| Q |
36 |
agcattgcttgttggatacttgataacatgtatttcccaaaggggtttgtctt |
88 |
Q |
| |
|
|||||||||||||||||| || || | ||| ||||||||||||||||| |||| |
|
|
| T |
30220261 |
agcattgcttgttggatatttaatcaaatgaatttcccaaaggggtttatctt |
30220209 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0024 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: scaffold0024
Description:
Target: scaffold0024; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 1 - 77
Target Start/End: Original strand, 79603 - 79679
Alignment:
| Q |
1 |
agtgcatgatgaagtttgaatattatggtgtaagcagcattgcttgttggatacttgataacatgtatttcccaaag |
77 |
Q |
| |
|
|||||||||||||||||||||| || ||| ||| ||||| |||||||||| || |||| |||||| |||||||| |
|
|
| T |
79603 |
agtgcatgatgaagtttgaatactaaggtaccagctgcattttttgttggatatttaataatatgtatctcccaaag |
79679 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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