View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15959_high_9 (Length: 319)
Name: NF15959_high_9
Description: NF15959
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15959_high_9 |
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Alignment Details
Target: chr5 (Bit Score: 171; Significance: 8e-92; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 171; E-Value: 8e-92
Query Start/End: Original strand, 1 - 191
Target Start/End: Complemental strand, 6729484 - 6729294
Alignment:
| Q |
1 |
cactacctctaacccacacaaactcatcacctttcactggatctgcaacaaccccattctctacctcaacaaattttattcctttctctacactgttatc |
100 |
Q |
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| T |
6729484 |
cactacctctaacccacacaaactcatcacccttcactagatctgcaacaaccccattctctacctcaacaaattttattcttttctctacaccgttatc |
6729385 |
T |
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| Q |
101 |
acttcatcacactaccccccttaccgtacctctttcgcaaacccaaacctatggctatttcactcagccgattgttaacacatcgatctat |
191 |
Q |
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| T |
6729384 |
acttcatcacactaccccccttaccgtacctctttcacaaacccaaacctatggctatttcactcagccgattgttaacacatcgatctat |
6729294 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 74; E-Value: 6e-34
Query Start/End: Original strand, 221 - 306
Target Start/End: Complemental strand, 6729282 - 6729197
Alignment:
| Q |
221 |
tttcagtctcgccgtttcaactcctccacactacaatttttcctactccacaccaccctatcccaagtaccaaacaccaccatatt |
306 |
Q |
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||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
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| T |
6729282 |
tttcagtttcgccatttcaactcctccacactacaatttttcctactccacaccaccctatcccacgtaccaaacaccaccatatt |
6729197 |
T |
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