View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1595_high_1 (Length: 229)
Name: NF1595_high_1
Description: NF1595
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1595_high_1 |
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Alignment Details
Target: chr4 (Bit Score: 192; Significance: 1e-104; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 192; E-Value: 1e-104
Query Start/End: Original strand, 1 - 221
Target Start/End: Original strand, 24695518 - 24695738
Alignment:
| Q |
1 |
atgttccacacacatgtgaaccaaactacattgacacgctttgagaatgctcttcttctacctagtagaccttccttccttttgaaaagccgaagagatc |
100 |
Q |
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| T |
24695518 |
atgttccacacacatgtgaaccaaactacattgacacgctttgagaatgctcttcttctacctagtagaccttccttccttttgaaaagccgaagagatc |
24695617 |
T |
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| Q |
101 |
ccaaatcacgaacatatattgtaccataaacctagaaaagcaatacactnnnnnnntagacgacataccgattcttcaaactcacactctccaacacatt |
200 |
Q |
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| T |
24695618 |
ccaaatcacgaacatatattgtaccataaacctagaaaaacaatacactaaaaaaatagacgacataccgattcttcaaacccacactctccaacacatt |
24695717 |
T |
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| Q |
201 |
gtaaagatccctggccaattg |
221 |
Q |
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||||||||||||||||||||| |
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| T |
24695718 |
gtaaagatccctggccaattg |
24695738 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 132; E-Value: 1e-68
Query Start/End: Original strand, 5 - 212
Target Start/End: Original strand, 24708056 - 24708264
Alignment:
| Q |
5 |
tccacacacatgtgaaccaaactacattgacacgctttgagaatgctcttcttctacctagtagaccttccttccttttgaaaagccgaagagatcccaa |
104 |
Q |
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|||||||||| | ||||||||||||| |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
24708056 |
tccacacacaggagaaccaaactacactgacacgctttgagaatgctcttccgctacctagtagaccttccttccttttgaaaagccgaagagatcccaa |
24708155 |
T |
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| Q |
105 |
atcacgaacatatattgtaccataaacctagaaaagcaatacact-nnnnnnntagacgacataccgattcttcaaactcacactctccaacacattgta |
203 |
Q |
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||||||||||||||| ||||||||||||||||||| ||| ||||| |||| ||||||| |||||||| ||| ||||||||||||||||||||| |
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| T |
24708156 |
atcacgaacatatatagtaccataaacctagaaaaacaagacactaaaaaaaatagatgacatactgattcttcgaacccacactctccaacacattgta |
24708255 |
T |
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| Q |
204 |
aagatccct |
212 |
Q |
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||||||||| |
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| T |
24708256 |
aagatccct |
24708264 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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