View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1595_high_1_N (Length: 344)

Name: NF1595_high_1_N
Description: NF1595
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1595_high_1_N
NF1595_high_1_N
[»] chr3 (15 HSPs)
chr3 (45-313)||(5678609-5678874)
chr3 (45-313)||(5669106-5669371)
chr3 (45-286)||(5692802-5693042)
chr3 (75-272)||(5744166-5744363)
chr3 (75-272)||(5781125-5781322)
chr3 (47-272)||(5792310-5792531)
chr3 (50-272)||(5788857-5789079)
chr3 (135-253)||(5695119-5695237)
chr3 (51-92)||(5668965-5669006)
chr3 (51-92)||(5678468-5678509)
chr3 (49-86)||(5751786-5751823)
chr3 (49-86)||(5788745-5788782)
chr3 (52-97)||(5668765-5668810)
chr3 (52-97)||(5678269-5678314)
chr3 (52-97)||(5692478-5692523)


Alignment Details
Target: chr3 (Bit Score: 215; Significance: 1e-118; HSPs: 15)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 215; E-Value: 1e-118
Query Start/End: Original strand, 45 - 313
Target Start/End: Original strand, 5678609 - 5678874
Alignment:
Q  45 ggaccacatatcaccgttcttgtgtctatttgcacataattaattattattttgtggcactgaaattgtgtttttcaattaagtgaagccttttggtgca 144  Q
    ||||||||||||||   |||||||||||||| | |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||    
T  5678609 ggaccacatatcac---tcttgtgtctattttctcataattaattattattttgaggcactgaaattgtgtttttcaattaagtgaagccttttggtgca 5678705  T
Q  145 ttttggtttccgatgaattgtaacaatagaaaatgacattgaagtttgccttctgcaactattgtaatttgtagtacaaattttatacattgtgtattta 244  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||| ||||||||||||||||||| |||||||| ||||||    
T  5678706 ttttggtttccgatgaattgtaacaatagaaaatgacattgaagtttaccttttgcaactattggaatttgtagtacaaattttgtacattgtatattta 5678805  T
Q  245 tttttctctgaaaaatcacttaagatactcattctaaagacaaaatttggattactcattcttaagaca 313  Q
    |||||||||||||||||||||||||||||||||||||||||| |||| |||||||||||||||||||||    
T  5678806 tttttctctgaaaaatcacttaagatactcattctaaagacagaattcggattactcattcttaagaca 5678874  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 199; E-Value: 1e-108
Query Start/End: Original strand, 45 - 313
Target Start/End: Original strand, 5669106 - 5669371
Alignment:
Q  45 ggaccacatatcaccgttcttgtgtctatttgcacataattaattattattttgtggcactgaaattgtgtttttcaattaagtgaagccttttggtgca 144  Q
    ||||||||||||||   |||||||||||||| | |||||||||||||||||||| ||||||||||||| ||||||| |||||||||||||||||||||||    
T  5669106 ggaccacatatcac---tcttgtgtctattttctcataattaattattattttgaggcactgaaattgcgtttttcgattaagtgaagccttttggtgca 5669202  T
Q  145 ttttggtttccgatgaattgtaacaatagaaaatgacattgaagtttgccttctgcaactattgtaatttgtagtacaaattttatacattgtgtattta 244  Q
    |||||||||||||||| |||||||||||||||||||||||||||||| |||| ||||||||||| ||||||||||||||||||| |||||||| ||||||    
T  5669203 ttttggtttccgatgatttgtaacaatagaaaatgacattgaagtttaccttttgcaactattggaatttgtagtacaaattttgtacattgtatattta 5669302  T
Q  245 tttttctctgaaaaatcacttaagatactcattctaaagacaaaatttggattactcattcttaagaca 313  Q
    ||||||||| ||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||    
T  5669303 tttttctctaaaaaatcacttaagatactcattctaaagacaaaattcggattactcattctaaagaca 5669371  T

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Target: chr3; HSP #3
Raw Score: 196; E-Value: 1e-106
Query Start/End: Original strand, 45 - 286
Target Start/End: Original strand, 5692802 - 5693042
Alignment:
Q  45 ggaccacatatcaccgttcttgtgtctatttgcacataattaattattattttgtggcactgaaattgtgtttttcaattaagtgaagccttttggtgca 144  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||  | |||| ||||||||||||||||||||||||||||||||||||||||    
T  5692802 ggaccacatatcaccgttcttgtgtctatttgcacataattaattattatt--gaggcattgaaattgtgtttttcaattaagtgaagccttttggtgca 5692899  T
Q  145 ttttggtttccgatgaattgtaacaatagaaaatgacattgaagtttgccttctgcaactattgtaatttgtagtacaaattttatacattgtgtattta 244  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||||||||| |||||||| ||||||    
T  5692900 ttttggtttccgatgaattgtaacaatagaaaatgacattgaagtttaccttttgcaactattgtaatttgtagtacaaattttgtacattgtatattta 5692999  T
Q  245 tttttctctgaaaaatcacttaaga-tactcattctaaagaca 286  Q
    ||||||||||||||||||||||||| |||||||||| ||||||    
T  5693000 tttttctctgaaaaatcacttaagattactcattcttaagaca 5693042  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 118; E-Value: 4e-60
Query Start/End: Original strand, 75 - 272
Target Start/End: Original strand, 5744166 - 5744363
Alignment:
Q  75 tgcacataattaattattattttgtggcactgaaattgtgtttttcaattaagtgaagccttttggtgcattttggtttccgatgaattgtaacaataga 174  Q
    |||||||||| ||||||||||||  || ||||||||||| |||||||||||||||||| |||||||| |  |||||||||||||||||||||||| ||||    
T  5744166 tgcacataatcaattattattttcaggaactgaaattgtctttttcaattaagtgaagacttttggtaccatttggtttccgatgaattgtaacactaga 5744265  T
Q  175 aaatgacattgaagtttgccttctgcaactattgtaatttgtagtacaaattttatacattgtgtatttatttttctctgaaaaatcacttaagatac 272  Q
    ||||||||||||||||| |||| ||||| ||||||||||||||||||||||||| ||||||||  |||||||||||||| ||  |||| |||||||||    
T  5744266 aaatgacattgaagtttaccttttgcaaatattgtaatttgtagtacaaattttgtacattgtaaatttatttttctctaaagcatcaattaagatac 5744363  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 118; E-Value: 4e-60
Query Start/End: Original strand, 75 - 272
Target Start/End: Original strand, 5781125 - 5781322
Alignment:
Q  75 tgcacataattaattattattttgtggcactgaaattgtgtttttcaattaagtgaagccttttggtgcattttggtttccgatgaattgtaacaataga 174  Q
    |||||||||| ||||||||||||  || ||||||||||| |||||||||||||||||| |||||||| |  |||||||||||||||||||||||| ||||    
T  5781125 tgcacataatcaattattattttcaggaactgaaattgtctttttcaattaagtgaagacttttggtaccatttggtttccgatgaattgtaacactaga 5781224  T
Q  175 aaatgacattgaagtttgccttctgcaactattgtaatttgtagtacaaattttatacattgtgtatttatttttctctgaaaaatcacttaagatac 272  Q
    ||||||||||||||||| |||| ||||| ||||||||||||||||||||||||| ||||||||  |||||||||||||| ||  |||| |||||||||    
T  5781225 aaatgacattgaagtttaccttttgcaaatattgtaatttgtagtacaaattttgtacattgtaaatttatttttctctaaagcatcaattaagatac 5781322  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 116; E-Value: 6e-59
Query Start/End: Original strand, 47 - 272
Target Start/End: Original strand, 5792310 - 5792531
Alignment:
Q  47 accacatatcaccgttcttgtgtctatttgcacataattaattattattttgtggcactgaaattgtgtttttcaattaagtgaagccttttggtgcatt 146  Q
    |||||||||||||||| |||||||||| |||||||||||||  ||||||  | |||||||||||||| |||||||||||||||||| ||||||||||  |    
T  5792310 accacatatcaccgtttttgtgtctatgtgcacataattaa--attatt--gaggcactgaaattgtatttttcaattaagtgaagacttttggtgccat 5792405  T
Q  147 ttggtttccgatgaattgtaacaatagaaaatgacattgaagtttgccttctgcaactattgtaatttgtagtacaaattttatacattgtgtatttatt 246  Q
    |||||||||||||||||||||||  |||||||||||||||||||| |||| | ||| ||||||| ||||||||||||||||| ||||||||  |||||||    
T  5792406 ttggtttccgatgaattgtaacacaagaaaatgacattgaagtttacctttttcaattattgtattttgtagtacaaattttgtacattgtaaatttatt 5792505  T
Q  247 tttctctgaaaaatcacttaagatac 272  Q
     |||| | ||| ||||||| ||||||    
T  5792506 attctataaaacatcacttcagatac 5792531  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 111; E-Value: 5e-56
Query Start/End: Original strand, 50 - 272
Target Start/End: Original strand, 5788857 - 5789079
Alignment:
Q  50 acatatcaccgttcttgtgtctatttg--cacataattaattattattttgtggcactgaaattgtgtttttcaattaagtgaagccttttggtgcattt 147  Q
    |||||||||||||||||||||||| ||  |||||||||||  ||||||||| |||||||||||||| | |||||||||||||| | ||||||||||  ||    
T  5788857 acatatcaccgttcttgtgtctatatgtgcacataattaa--attattttgaggcactgaaattgtctctttcaattaagtgatgacttttggtgccatt 5788954  T
Q  148 tggtttccgatgaattgtaacaatagaaaatgacattgaagtttgccttctgcaactattgtaatttgtagtacaaattttatacattgtgtatttattt 247  Q
    ||||||||||||||||||||||  |||||||||||||||||||| |||| | ||| ||||||| ||||||||||||||||| ||||||||  |||||||     
T  5788955 tggtttccgatgaattgtaacacaagaaaatgacattgaagtttacctttttcaattattgtattttgtagtacaaattttgtacattgtaaatttatta 5789054  T
Q  248 ttctctgaaaaatcacttaagatac 272  Q
    |||| | ||| ||||||| ||||||    
T  5789055 ttctataaaacatcacttcagatac 5789079  T

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Target: chr3; HSP #8
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 135 - 253
Target Start/End: Original strand, 5695119 - 5695237
Alignment:
Q  135 ttttggtgcattttggtttccgatgaattgtaacaatagaaaatgacattgaagtttgccttctgcaactattgtaatttgtagtacaaattttatacat 234  Q
    |||||||||  |||||||||||| |||||  |||| ||||||||||||||||||||| |||| |||||||||||||||||| |||||||||||| |||||    
T  5695119 ttttggtgccatttggtttccgaggaattagaacactagaaaatgacattgaagtttaccttttgcaactattgtaatttgaagtacaaattttgtacat 5695218  T
Q  235 tgtgtatttatttttctct 253  Q
    |||  ||||||||||||||    
T  5695219 tgtaaatttatttttctct 5695237  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 51 - 92
Target Start/End: Original strand, 5668965 - 5669006
Alignment:
Q  51 catatcaccgttcttgtgtctatttgcacataattaattatt 92  Q
    |||||||| |||||||||||||||||||||||||||||||||    
T  5668965 catatcacagttcttgtgtctatttgcacataattaattatt 5669006  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 51 - 92
Target Start/End: Original strand, 5678468 - 5678509
Alignment:
Q  51 catatcaccgttcttgtgtctatttgcacataattaattatt 92  Q
    |||||||| ||||||||||||||||||| |||||||||||||    
T  5678468 catatcacagttcttgtgtctatttgcatataattaattatt 5678509  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 49 - 86
Target Start/End: Original strand, 5751786 - 5751823
Alignment:
Q  49 cacatatcaccgttcttgtgtctatttgcacataatta 86  Q
    |||||||||||| |||||||||||||||||||||||||    
T  5751786 cacatatcaccgatcttgtgtctatttgcacataatta 5751823  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 49 - 86
Target Start/End: Original strand, 5788745 - 5788782
Alignment:
Q  49 cacatatcaccgttcttgtgtctatttgcacataatta 86  Q
    |||||||||||| |||||||||||||||||||||||||    
T  5788745 cacatatcaccgatcttgtgtctatttgcacataatta 5788782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 52 - 97
Target Start/End: Original strand, 5668765 - 5668810
Alignment:
Q  52 atatcaccgttcttgtgtctatttgcacataattaattattatttt 97  Q
    |||||||||||||||||  | | |||||||||||||||||||||||    
T  5668765 atatcaccgttcttgtgcttttatgcacataattaattattatttt 5668810  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 52 - 97
Target Start/End: Original strand, 5678269 - 5678314
Alignment:
Q  52 atatcaccgttcttgtgtctatttgcacataattaattattatttt 97  Q
    |||||||||||||||||  | | |||||||||||||||||||||||    
T  5678269 atatcaccgttcttgtgcttttatgcacataattaattattatttt 5678314  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 52 - 97
Target Start/End: Original strand, 5692478 - 5692523
Alignment:
Q  52 atatcaccgttcttgtgtctatttgcacataattaattattatttt 97  Q
    |||||||||||||||||  | | |||||||||||||||||||||||    
T  5692478 atatcaccgttcttgtgcttttatgcacataattaattattatttt 5692523  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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