View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1595_high_3 (Length: 289)
Name: NF1595_high_3
Description: NF1595
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1595_high_3 |
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Alignment Details
Target: chr4 (Bit Score: 126; Significance: 5e-65; HSPs: 10)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 126; E-Value: 5e-65
Query Start/End: Original strand, 138 - 263
Target Start/End: Complemental strand, 48816282 - 48816157
Alignment:
| Q |
138 |
gtacatctactgacaggtcgaagaatctagaaccgaagtgaatttgattgtaagaacagtagtcaccgtgggaaactacgacaatgttttagattgggag |
237 |
Q |
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| T |
48816282 |
gtacatctactgacaggtcgaagaatctagaaccgaagtgaatttgattgtaagaacagtagtcaccgtgggaaactacgacaatgttttagattgggag |
48816183 |
T |
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| Q |
238 |
ttcaaagcaagtggttctatcaagcc |
263 |
Q |
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| T |
48816182 |
ttcaaagcaagtggttctatcaagcc |
48816157 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 13 - 100
Target Start/End: Complemental strand, 48816407 - 48816320
Alignment:
| Q |
13 |
aatatggtaatatcatgtggcgtcacactgaaactggcattcctaatgaattcgtaagagtttttcctgcaaccaactaatttaacta |
100 |
Q |
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| T |
48816407 |
aatatggtaatatcatgtggcgtcacactgaaactggcattcctaatgaattcgtaagagtttttcctgcaaccaactaatttaacta |
48816320 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 79; E-Value: 6e-37
Query Start/End: Original strand, 155 - 265
Target Start/End: Complemental strand, 15825484 - 15825374
Alignment:
| Q |
155 |
tcgaagaatctagaaccgaagtgaatttgattgtaagaacagtagtcaccgtgggaaactacgacaatgttttagattgggagttcaaagcaagtggttc |
254 |
Q |
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| T |
15825484 |
tcgaagaatcaagaaccgaagtgaatttgattgttagaaccgtagtcactgttggaaactatgacaatgttttagattgggagttcaaaacaagtggttc |
15825385 |
T |
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| Q |
255 |
tatcaagccct |
265 |
Q |
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| T |
15825384 |
catcaagccct |
15825374 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 152 - 265
Target Start/End: Complemental strand, 48807690 - 48807577
Alignment:
| Q |
152 |
aggtcgaagaatctagaaccgaagtgaatttgattgtaagaacagtagtcaccgtgggaaactacgacaatgttttagattgggagttcaaagcaagtgg |
251 |
Q |
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| T |
48807690 |
aggttgaagaatctagaaccgaagtgaatttgattgtaagaacagtagtcaccgcaggaaaatatgacaatattttagaatgggagttcaaaacaagtgg |
48807591 |
T |
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| Q |
252 |
ttctatcaagccct |
265 |
Q |
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| T |
48807590 |
ttcgataaagccct |
48807577 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 13 - 94
Target Start/End: Complemental strand, 48807844 - 48807763
Alignment:
| Q |
13 |
aatatggtaatatcatgtggcgtcacactgaaactggcattcctaatgaattcgtaagagtttttcctgcaaccaactaatt |
94 |
Q |
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| T |
48807844 |
aatatggtaatatcatgtggcgtcacactgaaactgacattcctaatgaattcgtaagagtttttactgcaaccaactaatt |
48807763 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 157 - 265
Target Start/End: Complemental strand, 48789943 - 48789835
Alignment:
| Q |
157 |
gaagaatctagaaccgaagtgaatttgattgtaagaacagtagtcaccgtgggaaactacgacaatgttttagattgggagttcaaagcaagtggttcta |
256 |
Q |
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| T |
48789943 |
gaagagtctagaactgaagtgaatttgattgttagaactgtagtcacggtaggaaactatgacaatgttttagattgggagttcaaaacaagtggttcca |
48789844 |
T |
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| Q |
257 |
tcaagccct |
265 |
Q |
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|||| |||| |
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| T |
48789843 |
tcaaaccct |
48789835 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #7
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 13 - 71
Target Start/End: Complemental strand, 15825637 - 15825579
Alignment:
| Q |
13 |
aatatggtaatatcatgtggcgtcacactgaaactggcattcctaatgaattcgtaaga |
71 |
Q |
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| T |
15825637 |
aatatggtagtattatgtggcgtcacactgaaactagcattcctaatgaatttgtaaga |
15825579 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #8
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 7 - 71
Target Start/End: Complemental strand, 48790112 - 48790048
Alignment:
| Q |
7 |
tcgaagaatatggtaatatcatgtggcgtcacactgaaactggcattcctaatgaattcgtaaga |
71 |
Q |
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| T |
48790112 |
tcgaacaatatgatagtattatgtggcgtcacactgaaactggcattcctgatgaatttgtaaga |
48790048 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #9
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 155 - 263
Target Start/End: Original strand, 48834277 - 48834385
Alignment:
| Q |
155 |
tcgaagaatctagaaccgaagtgaatttgattgtaagaacagtagtcaccgtgggaaactacgacaatgttttagattgggagttcaaagcaagtggttc |
254 |
Q |
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| T |
48834277 |
tcgaagaatcaagaaccgaagtaaacttgatagtgaggagtgtagttacagttggcaactatgacaacatcatagattgggagttcaaagcaagtggttc |
48834376 |
T |
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| Q |
255 |
tatcaagcc |
263 |
Q |
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|||||||| |
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| T |
48834377 |
catcaagcc |
48834385 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #10
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 23 - 71
Target Start/End: Original strand, 48834101 - 48834149
Alignment:
| Q |
23 |
tatcatgtggcgtcacactgaaactggcattcctaatgaattcgtaaga |
71 |
Q |
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| T |
48834101 |
tatcatgtggcgtcacattgaaaccggcatttctgatgaattcgtaaga |
48834149 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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