View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1595_high_5 (Length: 208)
Name: NF1595_high_5
Description: NF1595
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1595_high_5 |
 | |
|
| [»] chr5 (3 HSPs) |
| |
|
Alignment Details
Target: chr5 (Bit Score: 181; Significance: 5e-98; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 181; E-Value: 5e-98
Query Start/End: Original strand, 20 - 208
Target Start/End: Complemental strand, 33811491 - 33811303
Alignment:
| Q |
20 |
cattaaatgcttggttcttattttccaatccttgctgcaccatctttgacaatagttaccaattgccaagtttgtcaatttgttgctgacatggtagaat |
119 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
|
|
| T |
33811491 |
cattaaatgcttggttcttattttccaatccttgctgcaccatctttgacaatagttaccaattgccaagtttgtcaatttgttactgacatggtagaat |
33811392 |
T |
|
| Q |
120 |
ttttaccaccgcaagctattattcataggcatgctagtggagaaaaattcaacatttccaattgatgcattattgttactattgtggct |
208 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
|
|
| T |
33811391 |
ttttaccaccgcaagctattattcataggcatgctagtggagaaaaattcaacatttcccattgatgcattattgttactattgtggct |
33811303 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 181; E-Value: 5e-98
Query Start/End: Original strand, 20 - 208
Target Start/End: Complemental strand, 33816409 - 33816221
Alignment:
| Q |
20 |
cattaaatgcttggttcttattttccaatccttgctgcaccatctttgacaatagttaccaattgccaagtttgtcaatttgttgctgacatggtagaat |
119 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
|
|
| T |
33816409 |
cattaaatgcttggttcttattttccaatccttgctgcaccatctttgacaatagttaccaattgccaagtttgtcaatttgttactgacatggtagaat |
33816310 |
T |
|
| Q |
120 |
ttttaccaccgcaagctattattcataggcatgctagtggagaaaaattcaacatttccaattgatgcattattgttactattgtggct |
208 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
|
|
| T |
33816309 |
ttttaccaccgcaagctattattcataggcatgctagtggagaaaaattcaacatttcccattgatgcattattgttactattgtggct |
33816221 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 177; E-Value: 1e-95
Query Start/End: Original strand, 20 - 208
Target Start/End: Complemental strand, 33807837 - 33807649
Alignment:
| Q |
20 |
cattaaatgcttggttcttattttccaatccttgctgcaccatctttgacaatagttaccaattgccaagtttgtcaatttgttgctgacatggtagaat |
119 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||| |
|
|
| T |
33807837 |
cattaaatgcttggttcttattttccaatccttgctgcaccatctttgacaatagttacccattgccaagtttgtcaatttgttactgacatggtagaat |
33807738 |
T |
|
| Q |
120 |
ttttaccaccgcaagctattattcataggcatgctagtggagaaaaattcaacatttccaattgatgcattattgttactattgtggct |
208 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
|
|
| T |
33807737 |
ttttaccaccgcaagctattattcataggcatgctagtggagaaaaattcaacatttcccattgatgcattattgttactattgtggct |
33807649 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University