View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1595_low_10 (Length: 274)
Name: NF1595_low_10
Description: NF1595
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1595_low_10 |
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| [»] scaffold1395 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 183; Significance: 5e-99; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 183; E-Value: 5e-99
Query Start/End: Original strand, 35 - 229
Target Start/End: Complemental strand, 43338806 - 43338612
Alignment:
| Q |
35 |
agctgttgccgaaacgtcaaacgtcactctgaaaaccaagttttcaacttactataaggctgttatgccatctggttcaatctactttgccaagaagctg |
134 |
Q |
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| T |
43338806 |
agctgttgccgaaacgtcaaacgttactctgaaaaccaagttttcaacttactataaggctgtcatgccatctggttcaatctacttcgccaagaagctg |
43338707 |
T |
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| Q |
135 |
aactggtgtgacaaggtatttccagtgagtagtcttgataaatttgggaaagagctagatgcattggcaaagttgaacaattcaaatgtgatgat |
229 |
Q |
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| T |
43338706 |
aactggtgtgacaaggtatttccagtgagtagtcttgataaatttgggaaagagctagatgcattggcaaagttgaacaattcaaatgtgatgat |
43338612 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 179; E-Value: 1e-96
Query Start/End: Original strand, 35 - 229
Target Start/End: Complemental strand, 43334371 - 43334177
Alignment:
| Q |
35 |
agctgttgccgaaacgtcaaacgtcactctgaaaaccaagttttcaacttactataaggctgttatgccatctggttcaatctactttgccaagaagctg |
134 |
Q |
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| T |
43334371 |
agctgttgccgaaacgtcaaacgttactctgaaaaccaagttttcaacttactataaggctgtcatgccatctggttcaatctacttcgccaagaagctg |
43334272 |
T |
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| Q |
135 |
aactggtgtgacaaggtatttccagtgagtagtcttgataaatttgggaaagagctagatgcattggcaaagttgaacaattcaaatgtgatgat |
229 |
Q |
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| T |
43334271 |
aactggtgtgacaaggtatttccagtgagtagtcttgataaatttgggaaagagctagatgcattggcaaagttggacaattcaaatgtgatgat |
43334177 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold1395 (Bit Score: 152; Significance: 1e-80; HSPs: 1)
Name: scaffold1395
Description:
Target: scaffold1395; HSP #1
Raw Score: 152; E-Value: 1e-80
Query Start/End: Original strand, 38 - 209
Target Start/End: Complemental strand, 172 - 1
Alignment:
| Q |
38 |
tgttgccgaaacgtcaaacgtcactctgaaaaccaagttttcaacttactataaggctgttatgccatctggttcaatctactttgccaagaagctgaac |
137 |
Q |
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||||||| ||||||||||||| ||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
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| T |
172 |
tgttgcctaaacgtcaaacgttactcttaaaatcaagttttcaacttactataaggctgttatgccatctggttcaatctacttcgccaagaagctgaac |
73 |
T |
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| Q |
138 |
tggtgtgacaaggtatttccagtgagtagtcttgataaatttgggaaagagctagatgcattggcaaagttg |
209 |
Q |
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| T |
72 |
tggtgtgacaaggtatttccagtgagtagtcttgataaatttgggaaagagctagatgcattggcaaagttg |
1 |
T |
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