View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1595_low_11 (Length: 270)

Name: NF1595_low_11
Description: NF1595
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1595_low_11
NF1595_low_11
[»] chr1 (3 HSPs)
chr1 (30-113)||(13898531-13898614)
chr1 (167-249)||(13898668-13898750)
chr1 (36-87)||(13886616-13886667)
[»] chr7 (1 HSPs)
chr7 (175-237)||(1035796-1035858)


Alignment Details
Target: chr1 (Bit Score: 84; Significance: 5e-40; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 84; E-Value: 5e-40
Query Start/End: Original strand, 30 - 113
Target Start/End: Original strand, 13898531 - 13898614
Alignment:
Q  30 tttgaagtgtagcatgaagatgtgaggttgaagttgaaagtgttagttttggtcatgattaaagtaccttgtaattgaactgtg 113  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  13898531 tttgaagtgtagcatgaagatgtgaggttgaagttgaaagtgttagttttggtcatgattaaagtaccttgtaattgaactgtg 13898614  T

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Target: chr1; HSP #2
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 167 - 249
Target Start/End: Original strand, 13898668 - 13898750
Alignment:
Q  167 agaatagaattcttggtacaatattggtttcagtgtgaaataggaaatataaacgtgatgacataatttgtggtatgatgatg 249  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  13898668 agaatagaattcttggtacaatattggtttcagtgtgaaataggaaatataaacgtgatgacataatttgtggtatgatgatg 13898750  T

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Target: chr1; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 36 - 87
Target Start/End: Complemental strand, 13886667 - 13886616
Alignment:
Q  36 gtgtagcatgaagatgtgaggttgaagttgaaagtgttagttttggtcatga 87  Q
    |||||||||||| ||||||||||||| ||| |||||||||||||||||||||    
T  13886667 gtgtagcatgaaaatgtgaggttgaaattggaagtgttagttttggtcatga 13886616  T

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Target: chr7 (Bit Score: 59; Significance: 5e-25; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 175 - 237
Target Start/End: Original strand, 1035796 - 1035858
Alignment:
Q  175 attcttggtacaatattggtttcagtgtgaaataggaaatataaacgtgatgacataatttgt 237  Q
    |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||    
T  1035796 attcttggtacaatattggtttcagtttgaaataggaaatataaacgtgatgacataatttgt 1035858  T

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