View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1595_low_13 (Length: 254)
Name: NF1595_low_13
Description: NF1595
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1595_low_13 |
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Alignment Details
Target: chr3 (Bit Score: 93; Significance: 2e-45; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 40 - 171
Target Start/End: Original strand, 30730461 - 30730593
Alignment:
| Q |
40 |
catcatcataatcatgctaaaaggtatatttcgaagagataagtacagcgagttgtatatctaaacggcaagaaaaatgaaataaatatgcatggttg-n |
138 |
Q |
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| T |
30730461 |
catcatcataatcatgctaaaaggtatatttcgaagagataagtacagcgatttgtatatctaaacggcaagaaaaatgaaatcaatatgcatggttgaa |
30730560 |
T |
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| Q |
139 |
nnnnnnntagtataatgaaaagagaatatacaa |
171 |
Q |
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| T |
30730561 |
aaaaaaatagtataatgaaaagagaatatacaa |
30730593 |
T |
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Target: chr3; HSP #2
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 202 - 241
Target Start/End: Original strand, 30730612 - 30730651
Alignment:
| Q |
202 |
atagacaaataataatgaaaaatgaaatgggtttgtatat |
241 |
Q |
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|||||||||||||||||||||||||||||||||||||||| |
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| T |
30730612 |
atagacaaataataatgaaaaatgaaatgggtttgtatat |
30730651 |
T |
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