View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1595_low_14 (Length: 234)

Name: NF1595_low_14
Description: NF1595
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1595_low_14
NF1595_low_14
[»] chr5 (2 HSPs)
chr5 (1-224)||(33811001-33811224)
chr5 (1-224)||(33815919-33816142)
[»] chr7 (2 HSPs)
chr7 (1-224)||(4836239-4836462)
chr7 (1-147)||(24379959-24380105)
[»] chr3 (1 HSPs)
chr3 (1-223)||(54967905-54968127)
[»] scaffold0479 (1 HSPs)
scaffold0479 (1-224)||(2019-2242)
[»] chr6 (3 HSPs)
chr6 (1-224)||(22981834-22982057)
chr6 (1-224)||(23806351-23806574)
chr6 (73-162)||(1105112-1105201)
[»] chr4 (1 HSPs)
chr4 (125-224)||(25003630-25003727)


Alignment Details
Target: chr5 (Bit Score: 212; Significance: 1e-116; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 212; E-Value: 1e-116
Query Start/End: Original strand, 1 - 224
Target Start/End: Complemental strand, 33811224 - 33811001
Alignment:
Q  1 ttgtttacaaaactctatcttctcttttggtagagcttttgccatcatatctgctccgttgtcattggtgtgaattttctctatttgcagcagtttattc 100  Q
    ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33811224 ttgtttacaaaactctatcttctcttttggtagagcttttgtcatcatatctgctccgttgtcattggtgtgaattttctctatttgcagcagtttattc 33811125  T
Q  101 tccaacacatcacgaatccaatgatacctcacatcgatgtgttttgaccttgaatggtatgtcgaattcttgctaaggtgaattgcactttgactatcac 200  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||    
T  33811124 tccaacacatcacgaatccaatgatacctcacatcgatgtgttttgaccttgaatggtatgtcgaattcttgctgaggtgaattgcactttgactatcac 33811025  T
Q  201 aatagagaacataactttcttgat 224  Q
    |||||||||||||| |||||||||    
T  33811024 aatagagaacataaatttcttgat 33811001  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 212; E-Value: 1e-116
Query Start/End: Original strand, 1 - 224
Target Start/End: Complemental strand, 33816142 - 33815919
Alignment:
Q  1 ttgtttacaaaactctatcttctcttttggtagagcttttgccatcatatctgctccgttgtcattggtgtgaattttctctatttgcagcagtttattc 100  Q
    ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33816142 ttgtttacaaaactctatcttctcttttggtagagcttttgtcatcatatctgctccgttgtcattggtgtgaattttctctatttgcagcagtttattc 33816043  T
Q  101 tccaacacatcacgaatccaatgatacctcacatcgatgtgttttgaccttgaatggtatgtcgaattcttgctaaggtgaattgcactttgactatcac 200  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||    
T  33816042 tccaacacatcacgaatccaatgatacctcacatcgatgtgttttgaccttgaatggtatgtcgaattcttgctgaggtgaattgcactttgactatcac 33815943  T
Q  201 aatagagaacataactttcttgat 224  Q
    |||||||||||||| |||||||||    
T  33815942 aatagagaacataaatttcttgat 33815919  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 176; Significance: 6e-95; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 176; E-Value: 6e-95
Query Start/End: Original strand, 1 - 224
Target Start/End: Original strand, 4836239 - 4836462
Alignment:
Q  1 ttgtttacaaaactctatcttctcttttggtagagcttttgccatcatatctgctccgttgtcattggtgtgaattttctctatttgcagcagtttattc 100  Q
    |||||| |||||||||||||||||||| ||||| | ||||| |||||| |||||||| || ||||| |||||||||||||||||||||||||||||||||    
T  4836239 ttgtttgcaaaactctatcttctctttcggtagcggttttgtcatcatgtctgctccattctcatttgtgtgaattttctctatttgcagcagtttattc 4836338  T
Q  101 tccaacacatcacgaatccaatgatacctcacatcgatgtgttttgaccttgaatggtatgtcgaattcttgctaaggtgaattgcactttgactatcac 200  Q
    || ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||    
T  4836339 tctaacacatcacgtatccaatgatacctcacatcgatgtgttttgaccttgaatggtatgtcgaattcttgctgaggtgaattgcactttgactatcac 4836438  T
Q  201 aatagagaacataactttcttgat 224  Q
    ||||||||||||||||||||||||    
T  4836439 aatagagaacataactttcttgat 4836462  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 1 - 147
Target Start/End: Original strand, 24379959 - 24380105
Alignment:
Q  1 ttgtttacaaaactctatcttctcttttggtagagcttttgccatcatatctgctccgttgtcattggtgtgaattttctctatttgcagcagtttattc 100  Q
    |||||| |||||||||||||||||||||| ||||| ||||| |||||| || ||||| || | ||||||||||| |||||||| || || || |||| ||    
T  24379959 ttgtttgcaaaactctatcttctcttttgatagaggttttgtcatcatgtcggctccattcttattggtgtgaactttctctactttcaacaatttactc 24380058  T
Q  101 tccaacacatcacgaatccaatgatacctcacatcgatgtgttttga 147  Q
    |||||||||||||||||||| ||||||||||||||  ||||||||||    
T  24380059 tccaacacatcacgaatccagtgatacctcacatcattgtgttttga 24380105  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 131; Significance: 4e-68; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 131; E-Value: 4e-68
Query Start/End: Original strand, 1 - 223
Target Start/End: Original strand, 54967905 - 54968127
Alignment:
Q  1 ttgtttacaaaactctatcttctcttttggtagagcttttgccatcatatctgctccgttgtcattggtgtgaattttctctatttgcagcagtttattc 100  Q
    |||||| |||||||||||||||||||||||||||||||||| |||||||||||||||||| ||||||||||||| |||||||| || || || |||| |     
T  54967905 ttgtttgcaaaactctatcttctcttttggtagagcttttgtcatcatatctgctccgttctcattggtgtgaactttctctactttcaacaatttactt 54968004  T
Q  101 tccaacacatcacgaatccaatgatacctcacatcgatgtgttttgaccttgaatggtatgtcgaattcttgctaaggtgaattgcactttgactatcac 200  Q
    |||||||||||||||||||| |||||||||||||| ||||||||||| || || |||||||| || |||||||| || |||||||| || ||||| || |    
T  54968005 tccaacacatcacgaatccagtgatacctcacatcaatgtgttttgatctggagtggtatgttgagttcttgctgagatgaattgcgctctgactgtcgc 54968104  T
Q  201 aatagagaacataactttcttga 223  Q
    |||||||||||||||||||||||    
T  54968105 aatagagaacataactttcttga 54968127  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0479 (Bit Score: 104; Significance: 5e-52; HSPs: 1)
Name: scaffold0479
Description:

Target: scaffold0479; HSP #1
Raw Score: 104; E-Value: 5e-52
Query Start/End: Original strand, 1 - 224
Target Start/End: Complemental strand, 2242 - 2019
Alignment:
Q  1 ttgtttacaaaactctatcttctcttttggtagagcttttgccatcatatctgctccgttgtcattggtgtgaattttctctatttgcagcagtttattc 100  Q
    |||||| |||||||| ||||||||||||||||||| ||| | |||||| |||||||| || ||||||||||||| |||||||| || || || |||| ||    
T  2242 ttgtttgcaaaactcaatcttctcttttggtagaggtttggtcatcatgtctgctccattctcattggtgtgaactttctctactttcaacaatttactc 2143  T
Q  101 tccaacacatcacgaatccaatgatacctcacatcgatgtgttttgaccttgaatggtatgtcgaattcttgctaaggtgaattgcactttgactatcac 200  Q
    |||||||||||||||||||| |||||||||||||| || |||||||| || || || ||||| || |||||||| || ||||| || |||||||| || |    
T  2142 tccaacacatcacgaatccagtgatacctcacatcaatatgttttgatctggagtgatatgttgagttcttgctgagatgaatcgcgctttgactgtcgc 2043  T
Q  201 aatagagaacataactttcttgat 224  Q
    ||||||||||||| ||||||||||    
T  2042 aatagagaacatagctttcttgat 2019  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 88; Significance: 2e-42; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 1 - 224
Target Start/End: Original strand, 22981834 - 22982057
Alignment:
Q  1 ttgtttacaaaactctatcttctcttttggtagagcttttgccatcatatctgctccgttgtcattggtgtgaattttctctatttgcagcagtttattc 100  Q
    |||||| |||||||| ||||| ||||||||||||| ||||| |||||| |||||||| || ||||||||||||| |||||||| || || || |||| ||    
T  22981834 ttgtttgcaaaactcaatcttttcttttggtagaggttttgtcatcatgtctgctccattctcattggtgtgaactttctctactttcaacaatttactc 22981933  T
Q  101 tccaacacatcacgaatccaatgatacctcacatcgatgtgttttgaccttgaatggtatgtcgaattcttgctaaggtgaattgcactttgactatcac 200  Q
    ||||||||||||  ||| || || |||||||| || |||||||| || || || ||||||||||| |||||||| || ||||| ||||| ||||| || |    
T  22981934 tccaacacatcattaatacagtggtacctcacgtcaatgtgtttcgatctagagtggtatgtcgagttcttgctgagatgaatcgcactctgactgtcgc 22982033  T
Q  201 aatagagaacataactttcttgat 224  Q
    ||||||||||||| |||| |||||    
T  22982034 aatagagaacatagcttttttgat 22982057  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 1 - 224
Target Start/End: Complemental strand, 23806574 - 23806351
Alignment:
Q  1 ttgtttacaaaactctatcttctcttttggtagagcttttgccatcatatctgctccgttgtcattggtgtgaattttctctatttgcagcagtttattc 100  Q
    |||||| |||||||| ||||| ||||||||||||| ||||| |||||| |||||||| || ||||||||||||| |||||||| || || || |||| ||    
T  23806574 ttgtttgcaaaactcaatcttttcttttggtagaggttttgtcatcatgtctgctccattctcattggtgtgaactttctctactttcaacaatttactc 23806475  T
Q  101 tccaacacatcacgaatccaatgatacctcacatcgatgtgttttgaccttgaatggtatgtcgaattcttgctaaggtgaattgcactttgactatcac 200  Q
    ||||||||||||  ||| || || |||||||| || |||||||| || || || ||||||||||| |||||||| || ||||| ||||| ||||| || |    
T  23806474 tccaacacatcattaatacagtggtacctcacgtcaatgtgtttcgatctagagtggtatgtcgagttcttgctgagatgaatcgcactctgactgtcgc 23806375  T
Q  201 aatagagaacataactttcttgat 224  Q
    ||||||||||||| |||| |||||    
T  23806374 aatagagaacatagcttttttgat 23806351  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 73 - 162
Target Start/End: Original strand, 1105112 - 1105201
Alignment:
Q  73 aattttctctatttgcagcagtttattctccaacacatcacgaatccaatgatacctcacatcgatgtgttttgaccttgaatggtatgt 162  Q
    ||||||||||||||  |||||||||||||| ||||| ||| | || |||||||  || |||| |||||||||||| ||| ||||||||||    
T  1105112 aattttctctatttaaagcagtttattctctaacacgtcatgtattcaatgatttcttacattgatgtgttttgatcttaaatggtatgt 1105201  T

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Target: chr4 (Bit Score: 52; Significance: 6e-21; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 125 - 224
Target Start/End: Original strand, 25003630 - 25003727
Alignment:
Q  125 tacctcacatcgatgtgttttgaccttgaatggtatgtcgaattcttgctaaggtgaattgcactttgactatcacaatagagaacataactttcttgat 224  Q
    ||||||||||| |||||||| |||||||| || |||||||| || || || |||||||||||||||||||||||||||||| |||||||||||| |||||    
T  25003630 tacctcacatctatgtgttt-gaccttgattg-tatgtcgagttatttctgaggtgaattgcactttgactatcacaatagggaacataactttgttgat 25003727  T

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