View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1595_low_1_N (Length: 373)
Name: NF1595_low_1_N
Description: NF1595
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1595_low_1_N |
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Alignment Details
Target: chr8 (Bit Score: 328; Significance: 0; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 328; E-Value: 0
Query Start/End: Original strand, 29 - 360
Target Start/End: Original strand, 1534826 - 1535157
Alignment:
| Q |
29 |
acctcagtcccaacttttaaacaaaacttaaaaagtgatccaataaaggacaaaatcatcaagattcacttaacagacaaccgaagctgaatttgatttt |
128 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1534826 |
acctcagtcccaacttttaaacaaaacttaaaaagtgatccaataaaggacaaaatcatcaagattcacttaacagacaaccgaagctgaatttgatttt |
1534925 |
T |
|
| Q |
129 |
gaatgatttatcattcaatcacaagacgaatcatccgtttatttcgtgatcatgagatgcagaaaattagtagcagttgcagtttcaagacaattggaga |
228 |
Q |
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| T |
1534926 |
gaatgatttatcattcaatcacaagacgaatcatccgtttatttcgtgatcatgagatgcagaaaattagtagcagttgcagtttcaagacaattggaga |
1535025 |
T |
|
| Q |
229 |
aaacattaattgagtcggtcattcaccttatcctcaggctccttttctttagcttcggtagcaggagtttccttatttccatcagctgctgctgcatctt |
328 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1535026 |
aaacattaattgagtcggtcattcaccttatcctcaggctccttttctttagcttcggtagcaggagtttccttatttccatcagctgctgctgcatctt |
1535125 |
T |
|
| Q |
329 |
ccttgccatcaggcttctcctcagcaacattc |
360 |
Q |
| |
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||| |||||||||||||||||||||||||||| |
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| T |
1535126 |
cctcgccatcaggcttctcctcagcaacattc |
1535157 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 199; E-Value: 1e-108
Query Start/End: Original strand, 88 - 360
Target Start/End: Complemental strand, 1138747 - 1138478
Alignment:
| Q |
88 |
caagattcacttaacagacaaccgaagctgaatttgattttgaatgatttatcattcaatcacaagacgaatcatccgtttatttcgtgatcatgagatg |
187 |
Q |
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||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| ||| |||| |||| || |||||||||||||||| |
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| T |
1138747 |
caagattcacttaacagacaaccgaagctgaatttaattttgaatgatttatcattcaatcacatgacaaatc---cgttcatctcgtgatcatgagatg |
1138651 |
T |
|
| Q |
188 |
cagaaaattagtagcagttgcagtttcaagacaattggagaaaacattaattgagtcggtcattcaccttatcctcaggctccttttctttagcttcggt |
287 |
Q |
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|||||||||||||||||||| | ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
1138650 |
cagaaaattagtagcagttgtaaattcaagacaattggagaaaacgttaattgagtcggtcattcaccttatcctcaggctccttttcttcagcttcggg |
1138551 |
T |
|
| Q |
288 |
agcaggagtttccttatttccatcagctgctgctgcatcttccttgccatcaggcttctcctcagcaacattc |
360 |
Q |
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||||||||||||||| |||||||||||||||||||||||||||| |||| ||||||| ||||||||||||||| |
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| T |
1138550 |
agcaggagtttccttgtttccatcagctgctgctgcatcttcctcgccaacaggcttgtcctcagcaacattc |
1138478 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 40 - 90
Target Start/End: Complemental strand, 1138851 - 1138801
Alignment:
| Q |
40 |
aacttttaaacaaaacttaaaaagtgatccaataaaggacaaaatcatcaa |
90 |
Q |
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||||||||||||||| ||||||||||||||||||||||||||||||||||| |
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| T |
1138851 |
aacttttaaacaaaatttaaaaagtgatccaataaaggacaaaatcatcaa |
1138801 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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