View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1595_low_4 (Length: 323)

Name: NF1595_low_4
Description: NF1595
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1595_low_4
NF1595_low_4
[»] chr3 (3 HSPs)
chr3 (171-323)||(30355095-30355245)
chr3 (88-173)||(30354855-30354940)
chr3 (217-293)||(48351531-48351605)
[»] chr6 (3 HSPs)
chr6 (210-283)||(32598952-32599023)
chr6 (210-323)||(12753764-12753875)
chr6 (219-323)||(32112730-32112832)
[»] chr1 (3 HSPs)
chr1 (210-301)||(12767332-12767421)
chr1 (210-319)||(26980266-26980373)
chr1 (210-293)||(41948150-41948231)
[»] chr7 (4 HSPs)
chr7 (220-293)||(14795226-14795297)
chr7 (220-293)||(15242218-15242289)
chr7 (210-323)||(48374443-48374554)
chr7 (228-320)||(1316341-1316431)
[»] chr5 (1 HSPs)
chr5 (220-275)||(28223790-28223843)
[»] chr4 (1 HSPs)
chr4 (210-293)||(20454633-20454714)


Alignment Details
Target: chr3 (Bit Score: 101; Significance: 5e-50; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 101; E-Value: 5e-50
Query Start/End: Original strand, 171 - 323
Target Start/End: Original strand, 30355095 - 30355245
Alignment:
Q  171 atacttccatcaatatacagtgaggcattgttgattctgtagcaaaattctcttttcaacattctctctaatactcacactcttttattaatttaaatca 270  Q
    |||||||||||||||||||||||||||||||| ||||||  ||||  ||||||||| |||||||||||||||||||||||| |||||||| |||||||||    
T  30355095 atacttccatcaatatacagtgaggcattgttcattctgc-gcaac-ttctcttttgaacattctctctaatactcacacttttttattagtttaaatca 30355192  T
Q  271 ttatgaatatacattttaaaaataaaactcatagaaagtggtggaacatgcat 323  Q
    || |||||||||||||| ||||||||||||||||||| |||||||||||||||    
T  30355193 ttgtgaatatacattttgaaaataaaactcatagaaaatggtggaacatgcat 30355245  T

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Target: chr3; HSP #2
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 88 - 173
Target Start/End: Original strand, 30354855 - 30354940
Alignment:
Q  88 aagttttgtttccaatatgcatataaaaagatttctatnnnnnnnttgataagatttatgtataaataaatattgaaaagataata 173  Q
    |||||||||||||||||||||||| |||||||||||||       |||||||||||||||||||||||||||||||||||||||||    
T  30354855 aagttttgtttccaatatgcatatgaaaagatttctataaaaaaattgataagatttatgtataaataaatattgaaaagataata 30354940  T

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Target: chr3; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 217 - 293
Target Start/End: Complemental strand, 48351605 - 48351531
Alignment:
Q  217 attctcttttcaacattctctctaatactcacactcttttattaatttaaatcattatgaatatacattttaaaaat 293  Q
    |||||||||| |||||| ||||||||||||   |||||  ||| ||||||||||||||| ||||||| ||| |||||    
T  48351605 attctcttttgaacattttctctaatactctttctctt--attgatttaaatcattatggatatacactttgaaaat 48351531  T

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Target: chr6 (Bit Score: 39; Significance: 0.0000000000005; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 210 - 283
Target Start/End: Original strand, 32598952 - 32599023
Alignment:
Q  210 tagcaaaattctcttttcaacattctctctaatactcacactcttttattaatttaaatcattatgaatataca 283  Q
    |||||| |||||||||| |||||||||| ||||||||||  ||||||||| |||||||||||| ||||| ||||    
T  32598952 tagcaacattctcttttaaacattctctttaatactcac--tcttttattgatttaaatcattgtgaatctaca 32599023  T

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Target: chr6; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 210 - 323
Target Start/End: Original strand, 12753764 - 12753875
Alignment:
Q  210 tagcaaaattctcttttcaacattctctctaatactcacactcttttattaatttaaatcattatgaatatacattttaaaaataaaactcatagaaagt 309  Q
    |||||| | ||||||||||||| |||||||||||||  | ||||||||||| ||||||||||| ||| | ||||   | |||||| ||| || | |||||    
T  12753764 tagcaacactctcttttcaacactctctctaatact--cgctcttttattagtttaaatcattgtgagtgtacaccctgaaaatagaacccacacaaagt 12753861  T
Q  310 ggtggaacatgcat 323  Q
    ||||| ||||||||    
T  12753862 ggtgggacatgcat 12753875  T

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Target: chr6; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 219 - 323
Target Start/End: Original strand, 32112730 - 32112832
Alignment:
Q  219 tctcttttcaacattctctctaatactcacactcttttattaatttaaatcattatgaatatacattttaaaaataaaactcatagaaagtggtggaaca 318  Q
    |||||||| |||||||||||||||| |  |||||| |||||  ||||||||||| || || |||| ||| |||||||||| || | ||| |||||  |||    
T  32112730 tctcttttgaacattctctctaatatt--cactctcttattgttttaaatcattgtggatctacactttgaaaataaaacccacacaaaatggtgtgaca 32112827  T
Q  319 tgcat 323  Q
    |||||    
T  32112828 tgcat 32112832  T

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Target: chr1 (Bit Score: 37; Significance: 0.000000000007; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 210 - 301
Target Start/End: Original strand, 12767332 - 12767421
Alignment:
Q  210 tagcaaaattctcttttcaacattctctctaatactcacactcttttattaatttaaatcattatgaatatacattttaaaaataaaactca 301  Q
    |||||||| |||||||| || |  |||||||||||||||  |||||||||  ||||||||||||||| | |||| |||||||||| ||||||    
T  12767332 tagcaaaaatctcttttgaaaaccctctctaatactcac--tcttttattggtttaaatcattatgagtctacactttaaaaatagaactca 12767421  T

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Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 210 - 319
Target Start/End: Original strand, 26980266 - 26980373
Alignment:
Q  210 tagcaaaattctcttttcaacattctctctaatactcacactcttttattaatttaaatcattatgaatatacattttaaaaataaaactcatagaaagt 309  Q
    |||||| | ||||||||||||| ||||| |||||||  |||||| ||||| |||||||||||| || || || ||||| |||||  |||||| | ||| |    
T  26980266 tagcaacactctcttttcaacactctctataatact--cactctcttattgatttaaatcattgtggatgtatattttgaaaattgaactcacacaaaat 26980363  T
Q  310 ggtggaacat 319  Q
    ||||| ||||    
T  26980364 ggtgggacat 26980373  T

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Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 210 - 293
Target Start/End: Original strand, 41948150 - 41948231
Alignment:
Q  210 tagcaaaattctcttttcaacattctctctaatactcacactcttttattaatttaaatcattatgaatatacattttaaaaat 293  Q
    |||||| |||||||||| |||| ||||||||| |||||| |||||  ||| |||||||||||| || || |||| ||| |||||    
T  41948150 tagcaatattctcttttgaacactctctctaacactcactctctt--attgatttaaatcattgtggatttacactttgaaaat 41948231  T

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Target: chr7 (Bit Score: 35; Significance: 0.0000000001; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 220 - 293
Target Start/End: Complemental strand, 14795297 - 14795226
Alignment:
Q  220 ctcttttcaacattctctctaatactcacactcttttattaatttaaatcattatgaatatacattttaaaaat 293  Q
    ||||||| |||| ||||||| |||||||| |||||  |||| |||||||||||||| ||||||| |||||||||    
T  14795297 ctcttttgaacactctctcttatactcactctctt--attagtttaaatcattatggatatacactttaaaaat 14795226  T

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Target: chr7; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 220 - 293
Target Start/End: Complemental strand, 15242289 - 15242218
Alignment:
Q  220 ctcttttcaacattctctctaatactcacactcttttattaatttaaatcattatgaatatacattttaaaaat 293  Q
    ||||||| |||| ||||||| |||||||| |||||  |||| |||||||||||||| ||||||| |||||||||    
T  15242289 ctcttttgaacactctctcttatactcactctctt--attagtttaaatcattatggatatacactttaaaaat 15242218  T

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Target: chr7; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 210 - 323
Target Start/End: Original strand, 48374443 - 48374554
Alignment:
Q  210 tagcaaaattctcttttcaacattctctctaatactcacactcttttattaatttaaatcattatgaatatacattttaaaaataaaactcatagaaagt 309  Q
    |||||| | |||||||| |||| |||||||||||||||| ||||| |  |  ||||||| ||| ||| |||||| |||  ||||| ||| ||||||||||    
T  48374443 tagcaacactctcttttgaacactctctctaatactcactctcttgt--tggtttaaattattgtgagtatacactttggaaatagaacccatagaaagt 48374540  T
Q  310 ggtggaacatgcat 323  Q
    ||||| ||||||||    
T  48374541 ggtgggacatgcat 48374554  T

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Target: chr7; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 228 - 320
Target Start/End: Complemental strand, 1316431 - 1316341
Alignment:
Q  228 aacattctctctaatactcacactcttttattaatttaaatcattatgaatatacattttaaaaataaaactcatagaaagtggtggaacatg 320  Q
    |||||| ||||||||||||||  |||||||||  ||||||||||| | ||| |||| |||| ||||| ||  |||| ||||| ||||||||||    
T  1316431 aacattttctctaatactcac--tcttttattggtttaaatcattgtaaatgtacactttagaaatacaatccatacaaagttgtggaacatg 1316341  T

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Target: chr5 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 220 - 275
Target Start/End: Original strand, 28223790 - 28223843
Alignment:
Q  220 ctcttttcaacattctctctaatactcacactcttttattaatttaaatcattatg 275  Q
    ||||||| ||||| ||||||||||||  ||||||||||||  ||||||||||||||    
T  28223790 ctcttttgaacatcctctctaatact--cactcttttattggtttaaatcattatg 28223843  T

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Target: chr4 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 210 - 293
Target Start/End: Complemental strand, 20454714 - 20454633
Alignment:
Q  210 tagcaaaattctcttttcaacattctctctaatactcacactcttttattaatttaaatcattatgaatatacattttaaaaat 293  Q
    |||||| |||||||||| |||| ||||||||| ||||||  ||| ||||| |||||||||||| || || |||| ||| |||||    
T  20454714 tagcaacattctcttttgaacactctctctaacactcac--tctgttattgatttaaatcattgtggatctacactttgaaaat 20454633  T

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