View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1595_low_6 (Length: 300)
Name: NF1595_low_6
Description: NF1595
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1595_low_6 |
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Alignment Details
Target: chr4 (Bit Score: 273; Significance: 1e-152; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 273; E-Value: 1e-152
Query Start/End: Original strand, 1 - 293
Target Start/End: Original strand, 37822960 - 37823252
Alignment:
| Q |
1 |
aatactttcttaatttatttttataagttcggtgtccttaaactttgttatatgtataggtgacacaaaaagtgtttatgaatccggtacccattttcat |
100 |
Q |
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| T |
37822960 |
aatactttcttaatttttttttataagttcggtgtccttaaattttgttatatgtataggtgacacaaaaagtgttcatgaatccggtacccattttcat |
37823059 |
T |
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| Q |
101 |
ttcaatatggtcaatttattcaatgttgaagccatagagagcgcaaagcctgttctgctaatgatagtggtccaatctatatatgcattggtgaatatta |
200 |
Q |
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| T |
37823060 |
ttcaatatggtcaatttattcaatgttgaagccatagagagcgcaaagcctgttctgctaatgatagtggtccaatctatatatgcattggtgaatatta |
37823159 |
T |
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| Q |
201 |
tgttcaagatagtaataaatgatggaacaagcttaagtattcttattgcctaccgattcatcttttctactgccttcattgttccctatgcta |
293 |
Q |
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| T |
37823160 |
tgttcaagatagtaataaatgatggaacaagcttaagtattcttattgcataccgattcatcttttctactgccttcattgttccctttgcta |
37823252 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 104 - 285
Target Start/End: Original strand, 37817801 - 37817982
Alignment:
| Q |
104 |
aatatggtcaatttattcaatgttgaagccatagagagcgcaaagcctgttctgctaatgatagtggtccaatctatatatgcattggtgaatattatgt |
203 |
Q |
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|||||||| ||||| ||||||||||||||||||||||| | ||||||||| || | |||||||||||||| || ||||||||| |||||||||| |||| |
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| T |
37817801 |
aatatggttaatttgttcaatgttgaagccatagagagtgtgaagcctgttgtgttgatgatagtggtccagtcaatatatgcagtggtgaatatcatgt |
37817900 |
T |
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| Q |
204 |
tcaagatagtaataaatgatggaacaagcttaagtattcttattgcctaccgattcatcttttctactgccttcattgttcc |
285 |
Q |
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| T |
37817901 |
taaagatggtaacaaatgatggatcaagcttaagtgttcttattgcttaccgatttgttttttctactgctttcactgttcc |
37817982 |
T |
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