View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1595_low_9 (Length: 277)
Name: NF1595_low_9
Description: NF1595
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1595_low_9 |
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Alignment Details
Target: chr1 (Bit Score: 86; Significance: 4e-41; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 86; E-Value: 4e-41
Query Start/End: Original strand, 186 - 271
Target Start/End: Original strand, 1133997 - 1134082
Alignment:
| Q |
186 |
caaaagagtatagtgcacatcatcatgccttcttcatcactaaacaaagtccctgatgacgtggccttcacaagttcctttgcttc |
271 |
Q |
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| T |
1133997 |
caaaagagtatagtgcacatcatcatgccttcttcatcactaaacaaagtccctgatgacgtggccttcacaagttcctttgcttc |
1134082 |
T |
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Target: chr1; HSP #2
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 1 - 136
Target Start/End: Original strand, 1133801 - 1133939
Alignment:
| Q |
1 |
tctagaggtgaagcttagattctcaaattaagtaatatgtcaattattgtgtcccaaagtaaaag---acnnnnnnnnnnnnnnnnttaagtgaagatcc |
97 |
Q |
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| T |
1133801 |
tctataggcgaagcttagattctcaaattaagtaatatgtcaattattgtgtcccaaagtaaaagaacaaaaaaatagtaaaaaaattaagtgaagatcc |
1133900 |
T |
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| Q |
98 |
tcataaagtagtgcgttcccacgagttcaaaagacaaca |
136 |
Q |
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| T |
1133901 |
tcataaagtagtgcgttcccacgagttcaaaagacaaca |
1133939 |
T |
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