View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15960_high_10 (Length: 517)
Name: NF15960_high_10
Description: NF15960
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15960_high_10 |
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Alignment Details
Target: chr4 (Bit Score: 232; Significance: 1e-128; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 232; E-Value: 1e-128
Query Start/End: Original strand, 61 - 351
Target Start/End: Complemental strand, 20070224 - 20069931
Alignment:
| Q |
61 |
aaaacttggtatattctgtgggggtgaagataatgagaaagggataaaattggaattgtatattatttataggggtaaatgtataagtgtaggtggtggg |
160 |
Q |
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| T |
20070224 |
aaaacttggtatattctgtgggggtgaagataatgagaaagggataaaattggaattgtatattatttgtaggggtaaatgtataagtgtaggtggtggg |
20070125 |
T |
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| Q |
161 |
tgatttttgggtcctaatcaagaatttatgttgctttatttcaaatgtcgtgcaacg---cccatataactgaatgatcaacggagagttgttagtggtt |
257 |
Q |
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| T |
20070124 |
tgatttttgggtcgtaatcaagaatttatgttgctttatttcaaatgtcatgcaaggtgacccatataactgaatgatcaatggagagttggtagtgggt |
20070025 |
T |
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| Q |
258 |
gaattttgggtcataatcaggtatttatgttagttaccatgtgaataagtttgcactttgctgtagacatgcgacaagttccacctttacttgt |
351 |
Q |
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| T |
20070024 |
gaattttgggtcataattaggtatttatgttagtaaccatgtgaataagtttgcactttgttgtagacatccgacaagttccacccttacttgt |
20069931 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 145; E-Value: 4e-76
Query Start/End: Original strand, 351 - 507
Target Start/End: Complemental strand, 20069853 - 20069697
Alignment:
| Q |
351 |
tatggcgtcgagggttgatcatttgttcttctgcctcatcatcgatggagactgcctagttttacatctaattcattggttcatacagtgtaaaatctgg |
450 |
Q |
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| T |
20069853 |
tatggcgtcgagggttgatcatttgttcttctgcctcatcatcgatgaagactgcctagttttacatctaattcattggttcatacagtgtaaaatctgg |
20069754 |
T |
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| Q |
451 |
gaaatagataccccattattaatttgaggtcagcttgaatagtttatactatagtgt |
507 |
Q |
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| T |
20069753 |
gaaatagataaccccttattaatttgaggtcagcttgaatagtttatactatagtgt |
20069697 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 36; Significance: 0.00000000005; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 92 - 151
Target Start/End: Original strand, 15926138 - 15926197
Alignment:
| Q |
92 |
aatgagaaagggataaaattggaattgtatattatttataggggtaaatgtataagtgta |
151 |
Q |
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| T |
15926138 |
aatgagaatgggataaaattggaatggtatatcatttgtcggggtaaaggtataagtgta |
15926197 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 34; Significance: 0.0000000007; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 92 - 153
Target Start/End: Complemental strand, 20021179 - 20021118
Alignment:
| Q |
92 |
aatgagaaagggataaaattggaattgtatattatttataggggtaaatgtataagtgtagg |
153 |
Q |
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| T |
20021179 |
aatgacaaaaggataaaattgaaaatttatataatttataggggtaaaagtataagtgtagg |
20021118 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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