View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF15960_high_14 (Length: 507)

Name: NF15960_high_14
Description: NF15960
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF15960_high_14
NF15960_high_14
[»] chr8 (4 HSPs)
chr8 (21-502)||(16463950-16464431)
chr8 (336-471)||(16494174-16494309)
chr8 (259-295)||(24294585-24294621)
chr8 (266-295)||(5228237-5228266)
[»] chr3 (4 HSPs)
chr3 (261-295)||(42252186-42252220)
chr3 (257-295)||(20882078-20882116)
chr3 (262-295)||(9276948-9276981)
chr3 (267-295)||(26643225-26643253)
[»] chr7 (1 HSPs)
chr7 (258-295)||(5363411-5363448)
[»] chr1 (2 HSPs)
chr1 (261-295)||(303754-303788)
chr1 (256-296)||(47525024-47525064)
[»] scaffold0091 (1 HSPs)
scaffold0091 (266-295)||(7654-7683)
[»] chr6 (1 HSPs)
chr6 (209-250)||(3151392-3151433)
[»] chr5 (1 HSPs)
chr5 (266-295)||(33267922-33267951)
[»] chr2 (2 HSPs)
chr2 (267-296)||(19173878-19173907)
chr2 (201-250)||(22131264-22131313)
[»] scaffold0393 (1 HSPs)
scaffold0393 (261-293)||(12174-12206)


Alignment Details
Target: chr8 (Bit Score: 442; Significance: 0; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 442; E-Value: 0
Query Start/End: Original strand, 21 - 502
Target Start/End: Original strand, 16463950 - 16464431
Alignment:
Q  21 ccgacacttattaaaggcatgtatgtgccgtccagacagcaacacatgtggttatatgcaatgacttatattcccctaaattatcaccagtgacagtgcc 120  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |    
T  16463950 ccgacacttattaaaggcatgtatgtgccgtccagacagcaacacatgtggttatatgcaatgacttatattcccctaaattatcaccggtgacagtgtc 16464049  T
Q  121 atagtcatgtctagtgtttatgcttctattagtgcttcatatacaagggagaaagaggataaataaagcactaacactttgacactaatagtaatttgag 220  Q
    ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||    
T  16464050 atagtcatgtctaatgtttatgcttctattagtgcttcatatacaagggagaaagaggataaataaagcaccaacactttgacaccaatagtaatttgag 16464149  T
Q  221 aatatgaaattgttgaatgtaaacacatgtttccgcgtcagacatgccttcaatctgaagtgtcggtgctacataatagaggattgatacttatgttgtt 320  Q
    || ||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||    
T  16464150 aaaatgaaattgttgaatgtaaacacatgtttccgcgtcagacatgccatcagtctgaagtgtcggtgctacataatagaggattgatacttatgttgtt 16464249  T
Q  321 ttgttctttcattttttcagctacaacgtacaataacatgaggaagccagtgacaaatagctcaaactacatttccaacccacatgaaatgggagttggg 420  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||    
T  16464250 ttgttctttcattttttcagctacaacgtacaataacatgaggaagccagtgacaaatagctcgaactacatttccaacccacatgaaatgggagttggg 16464349  T
Q  421 gaaattaatccactcaaagctctcaaccctggtttagtctttgaaacaaatgtgaaagactacattaacttcctatgctact 502  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  16464350 gaaattaatccactcaaagctctcaaccctggtttagtctttgaaacaaatgtgaaagactacattaacttcctatgttact 16464431  T

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Target: chr8; HSP #2
Raw Score: 108; E-Value: 5e-54
Query Start/End: Original strand, 336 - 471
Target Start/End: Original strand, 16494174 - 16494309
Alignment:
Q  336 ttcagctacaacgtacaataacatgaggaagccagtgacaaatagctcaaactacatttccaacccacatgaaatgggagttggggaaattaatccactc 435  Q
    |||||||||||| |||||||||||||||||||||||||| ||||||||||| ||| || ||||||||||||||||||||||||| |||||||||||||||    
T  16494174 ttcagctacaacctacaataacatgaggaagccagtgaccaatagctcaaattactttgccaacccacatgaaatgggagttggagaaattaatccactc 16494273  T
Q  436 aaagctctcaaccctggtttagtctttgaaacaaat 471  Q
    ||||||||||||||||| ||||||||||||||||||    
T  16494274 aaagctctcaaccctggattagtctttgaaacaaat 16494309  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 259 - 295
Target Start/End: Original strand, 24294585 - 24294621
Alignment:
Q  259 cagacatgccttcaatctgaagtgtcggtgctacata 295  Q
    |||||||||||||||| ||||||||||||||||||||    
T  24294585 cagacatgccttcaatatgaagtgtcggtgctacata 24294621  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 266 - 295
Target Start/End: Original strand, 5228237 - 5228266
Alignment:
Q  266 gccttcaatctgaagtgtcggtgctacata 295  Q
    ||||||||||||||||||||||||||||||    
T  5228237 gccttcaatctgaagtgtcggtgctacata 5228266  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 35; Significance: 0.0000000002; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 261 - 295
Target Start/End: Complemental strand, 42252220 - 42252186
Alignment:
Q  261 gacatgccttcaatctgaagtgtcggtgctacata 295  Q
    |||||||||||||||||||||||||||||||||||    
T  42252220 gacatgccttcaatctgaagtgtcggtgctacata 42252186  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 257 - 295
Target Start/End: Original strand, 20882078 - 20882116
Alignment:
Q  257 gtcagacatgccttcaatctgaagtgtcggtgctacata 295  Q
    ||||||||||||||||||||||||| ||||| |||||||    
T  20882078 gtcagacatgccttcaatctgaagtatcggtcctacata 20882116  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 262 - 295
Target Start/End: Original strand, 9276948 - 9276981
Alignment:
Q  262 acatgccttcaatctgaagtgtcggtgctacata 295  Q
    ||||||||||||||||||||||| ||||||||||    
T  9276948 acatgccttcaatctgaagtgtcagtgctacata 9276981  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 267 - 295
Target Start/End: Complemental strand, 26643253 - 26643225
Alignment:
Q  267 ccttcaatctgaagtgtcggtgctacata 295  Q
    |||||||||||||||||||||||||||||    
T  26643253 ccttcaatctgaagtgtcggtgctacata 26643225  T

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Target: chr7 (Bit Score: 34; Significance: 0.0000000007; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 258 - 295
Target Start/End: Original strand, 5363411 - 5363448
Alignment:
Q  258 tcagacatgccttcaatctgaagtgtcggtgctacata 295  Q
    ||||||||||||||||| ||||||||||||||||||||    
T  5363411 tcagacatgccttcaatttgaagtgtcggtgctacata 5363448  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 31; Significance: 0.00000005; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 261 - 295
Target Start/End: Original strand, 303754 - 303788
Alignment:
Q  261 gacatgccttcaatctgaagtgtcggtgctacata 295  Q
    ||||||||||||||||||||||| |||||||||||    
T  303754 gacatgccttcaatctgaagtgttggtgctacata 303788  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 256 - 296
Target Start/End: Complemental strand, 47525064 - 47525024
Alignment:
Q  256 cgtcagacatgccttcaatctgaagtgtcggtgctacataa 296  Q
    |||||||||||||||||||  ||||||||| ||||||||||    
T  47525064 cgtcagacatgccttcaattagaagtgtcgttgctacataa 47525024  T

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Target: scaffold0091 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: scaffold0091
Description:

Target: scaffold0091; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 266 - 295
Target Start/End: Original strand, 7654 - 7683
Alignment:
Q  266 gccttcaatctgaagtgtcggtgctacata 295  Q
    ||||||||||||||||||||||||||||||    
T  7654 gccttcaatctgaagtgtcggtgctacata 7683  T

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Target: chr6 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 209 - 250
Target Start/End: Complemental strand, 3151433 - 3151392
Alignment:
Q  209 tagtaatttgagaatatgaaattgttgaatgtaaacacatgt 250  Q
    |||||||||||||| ||| ||||||||||||||| |||||||    
T  3151433 tagtaatttgagaaaatggaattgttgaatgtaatcacatgt 3151392  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 266 - 295
Target Start/End: Original strand, 33267922 - 33267951
Alignment:
Q  266 gccttcaatctgaagtgtcggtgctacata 295  Q
    ||||||||||||||||||||||||||||||    
T  33267922 gccttcaatctgaagtgtcggtgctacata 33267951  T

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Target: chr2 (Bit Score: 30; Significance: 0.0000002; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 267 - 296
Target Start/End: Original strand, 19173878 - 19173907
Alignment:
Q  267 ccttcaatctgaagtgtcggtgctacataa 296  Q
    ||||||||||||||||||||||||||||||    
T  19173878 ccttcaatctgaagtgtcggtgctacataa 19173907  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 201 - 250
Target Start/End: Complemental strand, 22131313 - 22131264
Alignment:
Q  201 gacactaatagtaatttgagaatatgaaattgttgaatgtaaacacatgt 250  Q
    |||||| ||||||||||||||| |||| |||||| ||||||| |||||||    
T  22131313 gacactgatagtaatttgagaaaatgacattgttcaatgtaatcacatgt 22131264  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0393 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: scaffold0393
Description:

Target: scaffold0393; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 261 - 293
Target Start/End: Complemental strand, 12206 - 12174
Alignment:
Q  261 gacatgccttcaatctgaagtgtcggtgctaca 293  Q
    |||||||||||||||| ||||||||||||||||    
T  12206 gacatgccttcaatctaaagtgtcggtgctaca 12174  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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