View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15960_high_16 (Length: 457)
Name: NF15960_high_16
Description: NF15960
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15960_high_16 |
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| [»] chr1 (2 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 437; Significance: 0; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 437; E-Value: 0
Query Start/End: Original strand, 17 - 457
Target Start/End: Original strand, 43220864 - 43221304
Alignment:
| Q |
17 |
agatcctccattatggtaactccaagtgacatttttgttatcaaacccggtattaatttcccagtctttaccttcatatgcaggataactaatttttagt |
116 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43220864 |
agatcctccattatggtaactccaagtgacatttttgttatcaaacccggtattaatttcccagtctttaccttcatatgcaggataactaatttttagt |
43220963 |
T |
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| Q |
117 |
ggcatttctccgaccaactcatcccaacgagcttcaataagatccatgattgcagttgactgctctggagttgctaaagaagatagaattgcaacacagt |
216 |
Q |
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| T |
43220964 |
ggcatttctccgaccaactcatcccaacgagcttcaataagatccatgattgcagttgactgctctggagttgctaaagaagatagaattgcaacacagt |
43221063 |
T |
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| Q |
217 |
ttcctaaagcgaaccatcgaaaatccattcgagctggactgacatttccgataaagtagccaccgcattttggcataaagtcaaatagccaatctggaat |
316 |
Q |
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| T |
43221064 |
ttcctaaagcgaaccatcgaaaatccattcgagctggactgacatttccgataaagtagccaccgcattttggcataaagtcaaatagccaatctggaat |
43221163 |
T |
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| Q |
317 |
tgaatccggattaacattaaacttatttactgcagtatgtgagtactcctcggtcttgtaccgataaatgttatttagttgctggaagtcaagccaaaag |
416 |
Q |
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| T |
43221164 |
tgaatccggattaacgttaaacttatttactgcagtatgtgagtactcctcggtcttgtaccgataaatgttatttagttgctggaagtcaagccaaaag |
43221263 |
T |
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| Q |
417 |
tagcttctcatgtgaaaacttagtgcatgcaaacgtttcac |
457 |
Q |
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| T |
43221264 |
tagcttctcatgtgaaaacttagtgcatgcaaacgtttcac |
43221304 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 283; E-Value: 1e-158
Query Start/End: Original strand, 95 - 457
Target Start/End: Original strand, 43230026 - 43230388
Alignment:
| Q |
95 |
tgcaggataactaatttttagtggcatttctccgaccaactcatcccaacgagcttcaataagatccatgattgcagttgactgctctggagttgctaaa |
194 |
Q |
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| T |
43230026 |
tgcagggtaactaatttttagcggcatttctccaaccaactcatcccaacgagcttcaataagatccatgattgccattgactgctctggagttgctaaa |
43230125 |
T |
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| Q |
195 |
gaagatagaattgcaacacagtttcctaaagcgaaccatcgaaaatccattcgagctggactgacatttccgataaagtagccaccgcattttggcataa |
294 |
Q |
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| T |
43230126 |
gaagaaagaattgcaacacagtttcctaaagcaaaccatcgaaaatccattcgagccggactgacatttccaatgaagtagccaccacgtgttggcataa |
43230225 |
T |
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| Q |
295 |
agtcaaatagccaatctggaattgaatccggattaacattaaacttatttactgcagtatgtgagtactcctcggtcttgtaccgataaatgttatttag |
394 |
Q |
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||||||| | ||| |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |||||| |
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| T |
43230226 |
agtcaaacacccattctggaattgaatccggaataacattaaacttatttactgcagtatgtgagtactcctcagtcttgtaccgataaatgtcatttag |
43230325 |
T |
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| Q |
395 |
ttgctggaagtcaagccaaaagtagcttctcatgtgaaaacttagtgcatgcaaacgtttcac |
457 |
Q |
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| T |
43230326 |
ttgctggaagtcaagccaaaagtagcttctcatgtgaaaacttagtgcatgcaaacgcttcac |
43230388 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 330 - 382
Target Start/End: Complemental strand, 28864022 - 28863970
Alignment:
| Q |
330 |
acattaaacttatttactgcagtatgtgagtactcctcggtcttgtaccgata |
382 |
Q |
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| T |
28864022 |
acattaaacttgtttactgcagtatgtgagtactcttctgttttgtatcgata |
28863970 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 288 - 455
Target Start/End: Original strand, 55111783 - 55111950
Alignment:
| Q |
288 |
ggcataaagtcaaatagccaatctggaattgaatccggattaacattaaacttatttactgcagtatgtgagtactcctcggtcttgtaccgataaatgt |
387 |
Q |
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||||| || ||||| | ||||||||| | ||||| ||| | ||||||||||| || || ||||||||||||||||| || || ||| | ||||| || | |
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| T |
55111783 |
ggcatgaaatcaaaaatccaatctggtaaagaatcgggaatgacattaaacttgttcacagcagtatgtgagtactcttctgttttgaatcgatatatat |
55111882 |
T |
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| Q |
388 |
tatttagttgctggaagtcaagccaaaagtagcttctcatgtgaaaacttagtgcatgcaaacgtttc |
455 |
Q |
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| T |
55111883 |
cattaagttgcttcaaatccaaccaaaagtggcttctcatatgatagcttaaggcatgcaagcgtttc |
55111950 |
T |
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