View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF15960_high_19 (Length: 432)

Name: NF15960_high_19
Description: NF15960
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF15960_high_19
NF15960_high_19
[»] chr5 (4 HSPs)
chr5 (19-130)||(3346594-3346705)
chr5 (289-408)||(3346865-3346984)
chr5 (199-264)||(3346774-3346840)
chr5 (360-405)||(36240261-36240306)
[»] scaffold0003 (1 HSPs)
scaffold0003 (353-398)||(312767-312812)
[»] chr4 (3 HSPs)
chr4 (352-408)||(6422506-6422562)
chr4 (331-406)||(35663955-35664030)
chr4 (353-406)||(25455399-25455452)
[»] chr7 (2 HSPs)
chr7 (359-405)||(36352276-36352322)
chr7 (339-384)||(40840141-40840186)
[»] chr2 (3 HSPs)
chr2 (352-406)||(13724137-13724191)
chr2 (352-405)||(11582667-11582720)
chr2 (352-408)||(23986817-23986873)
[»] chr6 (3 HSPs)
chr6 (379-408)||(30929149-30929178)
chr6 (403-432)||(35213609-35213638)
chr6 (352-404)||(2282423-2282475)
[»] chr8 (2 HSPs)
chr8 (353-401)||(13209990-13210038)
chr8 (404-432)||(16613629-16613657)


Alignment Details
Target: chr5 (Bit Score: 112; Significance: 2e-56; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 112; E-Value: 2e-56
Query Start/End: Original strand, 19 - 130
Target Start/End: Original strand, 3346594 - 3346705
Alignment:
Q  19 ctcctatcatatcatattagcaaagtcaagaggtacacctcaatttccacttttacaaattttatattttatatatcaactaaaagtatttgtggacaac 118  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3346594 ctcctatcatatcatattagcaaagtcaagaggtacacctcaatttccacttttacaaattttatattttatatatcaactaaaagtatttgtggacaac 3346693  T
Q  119 tctgatcatcac 130  Q
    ||||||||||||    
T  3346694 tctgatcatcac 3346705  T

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Target: chr5; HSP #2
Raw Score: 104; E-Value: 1e-51
Query Start/End: Original strand, 289 - 408
Target Start/End: Original strand, 3346865 - 3346984
Alignment:
Q  289 ataaaggtttaataattagcaatctactgcacccttcgatctctatatacaagataaagtttcgtcaacaaaagttgatgtacttagtttaaaatttgga 388  Q
    ||||||| ||||||||||||||||||||||||||||||||||||||||| |||| |||||||||||||||||||||||||||| ||||||||||||||||    
T  3346865 ataaaggattaataattagcaatctactgcacccttcgatctctatatataagagaaagtttcgtcaacaaaagttgatgtacctagtttaaaatttgga 3346964  T
Q  389 tcagatacatcaatttttat 408  Q
    ||||||||||||||||||||    
T  3346965 tcagatacatcaatttttat 3346984  T

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Target: chr5; HSP #3
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 199 - 264
Target Start/End: Original strand, 3346774 - 3346840
Alignment:
Q  199 gtgtcaatgtcacttagtcataatcat-acaattggatcttnnnnnnntaatcatacaattcgaaag 264  Q
    ||||||||||||||||||||||||||| | |||||||||||       |||||||||||||||||||    
T  3346774 gtgtcaatgtcacttagtcataatcataaaaattggatcttaaaaaaataatcatacaattcgaaag 3346840  T

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Target: chr5; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 360 - 405
Target Start/End: Complemental strand, 36240306 - 36240261
Alignment:
Q  360 aagttgatgtacttagtttaaaatttggatcagatacatcaatttt 405  Q
    ||||||||||| || |||| |||||||||||| |||||||||||||    
T  36240306 aagttgatgtattttgtttgaaatttggatcaaatacatcaatttt 36240261  T

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Target: scaffold0003 (Bit Score: 34; Significance: 0.0000000006; HSPs: 1)
Name: scaffold0003
Description:

Target: scaffold0003; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 353 - 398
Target Start/End: Complemental strand, 312812 - 312767
Alignment:
Q  353 tcaacaaaagttgatgtacttagtttaaaatttggatcagatacat 398  Q
    ||||||||| ||||||||  ||||||||||||||||||||||||||    
T  312812 tcaacaaaaattgatgtatctagtttaaaatttggatcagatacat 312767  T

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Target: chr4 (Bit Score: 33; Significance: 0.000000002; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 352 - 408
Target Start/End: Complemental strand, 6422562 - 6422506
Alignment:
Q  352 gtcaacaaaagttgatgtacttagtttaaaatttggatcagatacatcaatttttat 408  Q
    |||||||||| ||||| || ||||||||||||||| |||||||| ||||| ||||||    
T  6422562 gtcaacaaaaattgatatatttagtttaaaatttgaatcagataaatcaacttttat 6422506  T

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Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 331 - 406
Target Start/End: Complemental strand, 35664030 - 35663955
Alignment:
Q  331 ctatatacaagataaagtttcgtcaacaaaagttgatgtacttagtttaaaatttggatcagatacatcaattttt 406  Q
    ||||||| |||| ||||||  || | ||||||||||||||  | ||| |||||||||| |||||||||||||||||    
T  35664030 ctatatataagagaaagttgtgtaagcaaaagttgatgtatctggttcaaaatttggaccagatacatcaattttt 35663955  T

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Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 353 - 406
Target Start/End: Complemental strand, 25455452 - 25455399
Alignment:
Q  353 tcaacaaaagttgatgtacttagtttaaaatttggatcagatacatcaattttt 406  Q
    ||||||||| ||||||||| | |||||||||||||| ||||| |||||| ||||    
T  25455452 tcaacaaaaattgatgtacctggtttaaaatttggaccagatgcatcaactttt 25455399  T

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Target: chr7 (Bit Score: 31; Significance: 0.00000004; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 359 - 405
Target Start/End: Complemental strand, 36352322 - 36352276
Alignment:
Q  359 aaagttgatgtacttagtttaaaatttggatcagatacatcaatttt 405  Q
    |||||||||||| |||||| |||||||| |||| |||||||||||||    
T  36352322 aaagttgatgtatttagttaaaaatttgaatcaaatacatcaatttt 36352276  T

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Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 339 - 384
Target Start/End: Original strand, 40840141 - 40840186
Alignment:
Q  339 aagataaagtttcgtcaacaaaagttgatgtacttagtttaaaatt 384  Q
    |||| ||| ||| |||||||||||||||||||||||||| ||||||    
T  40840141 aagagaaatttttgtcaacaaaagttgatgtacttagttaaaaatt 40840186  T

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Target: chr2 (Bit Score: 31; Significance: 0.00000004; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 352 - 406
Target Start/End: Original strand, 13724137 - 13724191
Alignment:
Q  352 gtcaacaaaagttgatgtacttagtttaaaatttggatcagatacatcaattttt 406  Q
    ||||||||||||||||||| || ||| |||| ||||| |||||||||||| ||||    
T  13724137 gtcaacaaaagttgatgtatttggttaaaaaattggaccagatacatcaactttt 13724191  T

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Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 352 - 405
Target Start/End: Original strand, 11582667 - 11582720
Alignment:
Q  352 gtcaacaaaagttgatgtacttagtttaaaatttggatcagatacatcaatttt 405  Q
    ||||||||||||||||| |  ||||| |||||||||| || |||||||||||||    
T  11582667 gtcaacaaaagttgatgaatctagttcaaaatttggaccaaatacatcaatttt 11582720  T

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Target: chr2; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 352 - 408
Target Start/End: Complemental strand, 23986873 - 23986817
Alignment:
Q  352 gtcaacaaaagttgatgtacttagtttaaaatttggatcagatacatcaatttttat 408  Q
    |||||||||| || ||||| |||||| ||||||||||||||| |||| || ||||||    
T  23986873 gtcaacaaaactttatgtatttagttcaaaatttggatcagaaacattaacttttat 23986817  T

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Target: chr6 (Bit Score: 30; Significance: 0.0000002; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 379 - 408
Target Start/End: Complemental strand, 30929178 - 30929149
Alignment:
Q  379 aaaatttggatcagatacatcaatttttat 408  Q
    ||||||||||||||||||||||||||||||    
T  30929178 aaaatttggatcagatacatcaatttttat 30929149  T

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Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 403 - 432
Target Start/End: Complemental strand, 35213638 - 35213609
Alignment:
Q  403 ttttatgagaaatgatatttgaacatctat 432  Q
    ||||||||||||||||||||||||||||||    
T  35213638 ttttatgagaaatgatatttgaacatctat 35213609  T

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Target: chr6; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 352 - 404
Target Start/End: Original strand, 2282423 - 2282475
Alignment:
Q  352 gtcaacaaaagttgatgtacttagtttaaaatttggatcagatacatcaattt 404  Q
    ||||||||||||| ||||| |||||| |||| ||| |||| ||||||||||||    
T  2282423 gtcaacaaaagttaatgtatttagttcaaaaattgtatcaaatacatcaattt 2282475  T

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Target: chr8 (Bit Score: 29; Significance: 0.0000006; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 353 - 401
Target Start/End: Original strand, 13209990 - 13210038
Alignment:
Q  353 tcaacaaaagttgatgtacttagtttaaaatttggatcagatacatcaa 401  Q
    |||||||||||| ||||| || ||| |||||||| ||||||||||||||    
T  13209990 tcaacaaaagttaatgtatttggttcaaaatttgtatcagatacatcaa 13210038  T

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Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 404 - 432
Target Start/End: Original strand, 16613629 - 16613657
Alignment:
Q  404 tttatgagaaatgatatttgaacatctat 432  Q
    |||||||||||||||||||||||||||||    
T  16613629 tttatgagaaatgatatttgaacatctat 16613657  T

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