View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF15960_high_27 (Length: 391)

Name: NF15960_high_27
Description: NF15960
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF15960_high_27
NF15960_high_27
[»] chr8 (3 HSPs)
chr8 (13-374)||(93356-93694)
chr8 (16-54)||(3739295-3739333)
chr8 (26-55)||(1170257-1170286)
[»] chr4 (5 HSPs)
chr4 (18-55)||(4609117-4609154)
chr4 (18-53)||(10249082-10249117)
chr4 (14-52)||(8897820-8897858)
chr4 (25-55)||(20702107-20702137)
chr4 (20-54)||(35603419-35603453)
[»] chr7 (9 HSPs)
chr7 (16-55)||(14553785-14553824)
chr7 (16-55)||(15994893-15994932)
chr7 (18-52)||(19008710-19008744)
chr7 (19-53)||(27509380-27509414)
chr7 (25-54)||(4676397-4676426)
chr7 (25-54)||(4785759-4785788)
chr7 (25-54)||(4818759-4818788)
chr7 (18-54)||(662786-662822)
chr7 (19-51)||(8801253-8801285)
[»] chr3 (8 HSPs)
chr3 (13-51)||(44714262-44714300)
chr3 (18-55)||(7791559-7791596)
chr3 (19-55)||(45885647-45885683)
chr3 (25-55)||(12565818-12565848)
chr3 (25-55)||(13155737-13155767)
chr3 (25-55)||(13260221-13260251)
chr3 (19-52)||(611416-611449)
chr3 (18-46)||(47787573-47787601)
[»] chr2 (7 HSPs)
chr2 (18-54)||(36817796-36817832)
chr2 (16-51)||(25915481-25915516)
chr2 (14-52)||(31593808-31593846)
chr2 (18-51)||(24836578-24836611)
chr2 (25-54)||(40499638-40499667)
chr2 (16-52)||(2383330-2383366)
chr2 (27-55)||(42065878-42065906)
[»] chr1 (5 HSPs)
chr1 (23-54)||(23773669-23773700)
chr1 (18-55)||(33327084-33327121)
chr1 (20-52)||(16823888-16823920)
chr1 (16-52)||(27904633-27904669)
chr1 (19-51)||(34011498-34011530)
[»] scaffold0002 (1 HSPs)
scaffold0002 (25-55)||(151221-151251)
[»] chr6 (2 HSPs)
chr6 (13-54)||(30233046-30233087)
chr6 (16-48)||(17259746-17259778)
[»] chr5 (4 HSPs)
chr5 (23-52)||(31331201-31331230)
chr5 (25-54)||(36226216-36226245)
chr5 (19-51)||(9523656-9523688)
chr5 (19-55)||(13998971-13999007)
[»] scaffold0128 (1 HSPs)
scaffold0128 (27-55)||(43423-43451)


Alignment Details
Target: chr8 (Bit Score: 241; Significance: 1e-133; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 241; E-Value: 1e-133
Query Start/End: Original strand, 13 - 374
Target Start/End: Original strand, 93356 - 93694
Alignment:
Q  13 gaactaaaagatgttattttctttatatatagtatagatataggattattattnnnnnnnnnnnggattattattaaaaagaaatggtaagtagcgaaga 112  Q
    ||||||||||||||||||||||||||||| |||||||||||||||||||||||           ||||||||||||||||||||||||||||| ||||||    
T  93356 gaactaaaagatgttattttctttatatacagtatagatataggattattattaaaaaaaaaa-ggattattattaaaaagaaatggtaagtaacgaaga 93454  T
Q  113 tatgttactcttagagcatgaattagagcaattcggtttctattaggtatttcattagagagaaattatttttgaggtcctgtaggattcacttaatatt 212  Q
    |||||||||||                      |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  93455 tatgttactct----------------------cggtttctattaggtatttcattagagagaaattatttttgaggtcctgtaggattcacttaatatt 93532  T
Q  213 tcttaattaagttaacatgacaagcatgtataatgatagggtatataagcatactccgaagaagttgatgtctgcttgcaaatgatagaaaggaagcttt 312  Q
    ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  93533 tcttaattaagttaacatgacaaacatgtataatgatagggtatataagcatactccgaagaagttgatgtctgcttgcaaatgatagaaaggaagcttt 93632  T
Q  313 tcaggaagctaacttcaccataattttgtctacaacaggttgaatgtagataaatggaaatc 374  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  93633 tcaggaagctaacttcaccataattttgtctacaacaggttgaatgtagataaatggaaatc 93694  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 16 - 54
Target Start/End: Complemental strand, 3739333 - 3739295
Alignment:
Q  16 ctaaaagatgttattttctttatatatagtatagatata 54  Q
    |||||||||||||||||||||||||||||||||||||||    
T  3739333 ctaaaagatgttattttctttatatatagtatagatata 3739295  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 26 - 55
Target Start/End: Complemental strand, 1170286 - 1170257
Alignment:
Q  26 ttattttctttatatatagtatagatatag 55  Q
    ||||||||||||||||||||||||||||||    
T  1170286 ttattttctttatatatagtatagatatag 1170257  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 38; Significance: 0.000000000002; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 18 - 55
Target Start/End: Complemental strand, 4609154 - 4609117
Alignment:
Q  18 aaaagatgttattttctttatatatagtatagatatag 55  Q
    ||||||||||||||||||||||||||||||||||||||    
T  4609154 aaaagatgttattttctttatatatagtatagatatag 4609117  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 18 - 53
Target Start/End: Complemental strand, 10249117 - 10249082
Alignment:
Q  18 aaaagatgttattttctttatatatagtatagatat 53  Q
    |||| |||||||||||||||||||||||||||||||    
T  10249117 aaaacatgttattttctttatatatagtatagatat 10249082  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 14 - 52
Target Start/End: Original strand, 8897820 - 8897858
Alignment:
Q  14 aactaaaagatgttattttctttatatatagtatagata 52  Q
    |||| |||||| |||||||||||||||||||||||||||    
T  8897820 aactgaaagatattattttctttatatatagtatagata 8897858  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 25 - 55
Target Start/End: Complemental strand, 20702137 - 20702107
Alignment:
Q  25 gttattttctttatatatagtatagatatag 55  Q
    |||||||||||||||||||||||||||||||    
T  20702137 gttattttctttatatatagtatagatatag 20702107  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 20 - 54
Target Start/End: Original strand, 35603419 - 35603453
Alignment:
Q  20 aagatgttattttctttatatatagtatagatata 54  Q
    |||| ||||||||||||||||||||||||||||||    
T  35603419 aagaggttattttctttatatatagtatagatata 35603453  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 36; Significance: 0.00000000004; HSPs: 9)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 16 - 55
Target Start/End: Original strand, 14553785 - 14553824
Alignment:
Q  16 ctaaaagatgttattttctttatatatagtatagatatag 55  Q
    ||||||||||||||||||||||||||||||||| ||||||    
T  14553785 ctaaaagatgttattttctttatatatagtataaatatag 14553824  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 16 - 55
Target Start/End: Original strand, 15994893 - 15994932
Alignment:
Q  16 ctaaaagatgttattttctttatatatagtatagatatag 55  Q
    ||||||||||||||||||||||||||||||||| ||||||    
T  15994893 ctaaaagatgttattttctttatatatagtataaatatag 15994932  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 18 - 52
Target Start/End: Original strand, 19008710 - 19008744
Alignment:
Q  18 aaaagatgttattttctttatatatagtatagata 52  Q
    |||| ||||||||||||||||||||||||||||||    
T  19008710 aaaacatgttattttctttatatatagtatagata 19008744  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 19 - 53
Target Start/End: Complemental strand, 27509414 - 27509380
Alignment:
Q  19 aaagatgttattttctttatatatagtatagatat 53  Q
    ||||| |||||||||||||||||||||||||||||    
T  27509414 aaagacgttattttctttatatatagtatagatat 27509380  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 25 - 54
Target Start/End: Original strand, 4676397 - 4676426
Alignment:
Q  25 gttattttctttatatatagtatagatata 54  Q
    ||||||||||||||||||||||||||||||    
T  4676397 gttattttctttatatatagtatagatata 4676426  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 25 - 54
Target Start/End: Original strand, 4785759 - 4785788
Alignment:
Q  25 gttattttctttatatatagtatagatata 54  Q
    ||||||||||||||||||||||||||||||    
T  4785759 gttattttctttatatatagtatagatata 4785788  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 25 - 54
Target Start/End: Original strand, 4818759 - 4818788
Alignment:
Q  25 gttattttctttatatatagtatagatata 54  Q
    ||||||||||||||||||||||||||||||    
T  4818759 gttattttctttatatatagtatagatata 4818788  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 18 - 54
Target Start/End: Complemental strand, 662822 - 662786
Alignment:
Q  18 aaaagatgttattttctttatatatagtatagatata 54  Q
    |||||||| |||||||||||||| |||||||||||||    
T  662822 aaaagatgctattttctttatatttagtatagatata 662786  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 19 - 51
Target Start/End: Complemental strand, 8801285 - 8801253
Alignment:
Q  19 aaagatgttattttctttatatatagtatagat 51  Q
    ||||| |||||||||||||||||||||||||||    
T  8801285 aaagaagttattttctttatatatagtatagat 8801253  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 35; Significance: 0.0000000001; HSPs: 8)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 13 - 51
Target Start/End: Complemental strand, 44714300 - 44714262
Alignment:
Q  13 gaactaaaagatgttattttctttatatatagtatagat 51  Q
    ||||||||| |||||||||||||||||||||||||||||    
T  44714300 gaactaaaacatgttattttctttatatatagtatagat 44714262  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 18 - 55
Target Start/End: Original strand, 7791559 - 7791596
Alignment:
Q  18 aaaagatgttattttctttatatatagtatagatatag 55  Q
    |||| |||||||||||||||||||||||||||||||||    
T  7791559 aaaacatgttattttctttatatatagtatagatatag 7791596  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 19 - 55
Target Start/End: Complemental strand, 45885683 - 45885647
Alignment:
Q  19 aaagatgttattttctttatatatagtatagatatag 55  Q
    ||||||||||||||||||||||||| |||||||||||    
T  45885683 aaagatgttattttctttatatataatatagatatag 45885647  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 25 - 55
Target Start/End: Original strand, 12565818 - 12565848
Alignment:
Q  25 gttattttctttatatatagtatagatatag 55  Q
    |||||||||||||||||||||||||||||||    
T  12565818 gttattttctttatatatagtatagatatag 12565848  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 25 - 55
Target Start/End: Original strand, 13155737 - 13155767
Alignment:
Q  25 gttattttctttatatatagtatagatatag 55  Q
    |||||||||||||||||||||||||||||||    
T  13155737 gttattttctttatatatagtatagatatag 13155767  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 25 - 55
Target Start/End: Original strand, 13260221 - 13260251
Alignment:
Q  25 gttattttctttatatatagtatagatatag 55  Q
    |||||||||||||||||||||||||||||||    
T  13260221 gttattttctttatatatagtatagatatag 13260251  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 19 - 52
Target Start/End: Complemental strand, 611449 - 611416
Alignment:
Q  19 aaagatgttattttctttatatatagtatagata 52  Q
    ||||||||| ||||||||||||||||||||||||    
T  611449 aaagatgttgttttctttatatatagtatagata 611416  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 18 - 46
Target Start/End: Original strand, 47787573 - 47787601
Alignment:
Q  18 aaaagatgttattttctttatatatagta 46  Q
    |||||||||||||||||||||||||||||    
T  47787573 aaaagatgttattttctttatatatagta 47787601  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 33; Significance: 0.000000002; HSPs: 7)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 18 - 54
Target Start/End: Original strand, 36817796 - 36817832
Alignment:
Q  18 aaaagatgttattttctttatatatagtatagatata 54  Q
    |||| ||||||||||||||||||||||||||||||||    
T  36817796 aaaacatgttattttctttatatatagtatagatata 36817832  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 16 - 51
Target Start/End: Original strand, 25915481 - 25915516
Alignment:
Q  16 ctaaaagatgttattttctttatatatagtatagat 51  Q
    |||||||| |||||||||||||||||||||||||||    
T  25915481 ctaaaagaggttattttctttatatatagtatagat 25915516  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 14 - 52
Target Start/End: Original strand, 31593808 - 31593846
Alignment:
Q  14 aactaaaagatgttattttctttatatatagtatagata 52  Q
    |||||||||| ||| ||||||||||||||||||||||||    
T  31593808 aactaaaagaagttgttttctttatatatagtatagata 31593846  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 18 - 51
Target Start/End: Original strand, 24836578 - 24836611
Alignment:
Q  18 aaaagatgttattttctttatatatagtatagat 51  Q
    |||| |||||||||||||||||||||||||||||    
T  24836578 aaaacatgttattttctttatatatagtatagat 24836611  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 25 - 54
Target Start/End: Original strand, 40499638 - 40499667
Alignment:
Q  25 gttattttctttatatatagtatagatata 54  Q
    ||||||||||||||||||||||||||||||    
T  40499638 gttattttctttatatatagtatagatata 40499667  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 16 - 52
Target Start/End: Complemental strand, 2383366 - 2383330
Alignment:
Q  16 ctaaaagatgttattttctttatatatagtatagata 52  Q
    |||||||||||  ||||||||||||||||||||||||    
T  2383366 ctaaaagatgtagttttctttatatatagtatagata 2383330  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 27 - 55
Target Start/End: Original strand, 42065878 - 42065906
Alignment:
Q  27 tattttctttatatatagtatagatatag 55  Q
    |||||||||||||||||||||||||||||    
T  42065878 tattttctttatatatagtatagatatag 42065906  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 32; Significance: 0.000000009; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 23 - 54
Target Start/End: Original strand, 23773669 - 23773700
Alignment:
Q  23 atgttattttctttatatatagtatagatata 54  Q
    ||||||||||||||||||||||||||||||||    
T  23773669 atgttattttctttatatatagtatagatata 23773700  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 18 - 55
Target Start/End: Original strand, 33327084 - 33327121
Alignment:
Q  18 aaaagatgttattttctttatatatagtatagatatag 55  Q
    |||| |||||||||||||||||||||||||| ||||||    
T  33327084 aaaacatgttattttctttatatatagtataaatatag 33327121  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 20 - 52
Target Start/End: Original strand, 16823888 - 16823920
Alignment:
Q  20 aagatgttattttctttatatatagtatagata 52  Q
    |||| ||||||||||||||||||||||||||||    
T  16823888 aagaggttattttctttatatatagtatagata 16823920  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 16 - 52
Target Start/End: Original strand, 27904633 - 27904669
Alignment:
Q  16 ctaaaagatgttattttctttatatatagtatagata 52  Q
    |||||||| ||||||||||||||| ||||||||||||    
T  27904633 ctaaaagaggttattttctttatacatagtatagata 27904669  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 19 - 51
Target Start/End: Original strand, 34011498 - 34011530
Alignment:
Q  19 aaagatgttattttctttatatatagtatagat 51  Q
    ||||| |||||||||||||||||||||||||||    
T  34011498 aaagaagttattttctttatatatagtatagat 34011530  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0002 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: scaffold0002
Description:

Target: scaffold0002; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 25 - 55
Target Start/End: Complemental strand, 151251 - 151221
Alignment:
Q  25 gttattttctttatatatagtatagatatag 55  Q
    |||||||||||||||||||||||||||||||    
T  151251 gttattttctttatatatagtatagatatag 151221  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 30; Significance: 0.0000001; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 13 - 54
Target Start/End: Complemental strand, 30233087 - 30233046
Alignment:
Q  13 gaactaaaagatgttattttctttatatatagtatagatata 54  Q
    |||||||| || |||||||||||||||||||||||| |||||    
T  30233087 gaactaaaggaagttattttctttatatatagtatatatata 30233046  T

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Target: chr6; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 16 - 48
Target Start/End: Original strand, 17259746 - 17259778
Alignment:
Q  16 ctaaaagatgttattttctttatatatagtata 48  Q
    |||||||||| ||||||||||||||||||||||    
T  17259746 ctaaaagatgatattttctttatatatagtata 17259778  T

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Target: chr5 (Bit Score: 30; Significance: 0.0000001; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 23 - 52
Target Start/End: Original strand, 31331201 - 31331230
Alignment:
Q  23 atgttattttctttatatatagtatagata 52  Q
    ||||||||||||||||||||||||||||||    
T  31331201 atgttattttctttatatatagtatagata 31331230  T

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Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 25 - 54
Target Start/End: Complemental strand, 36226245 - 36226216
Alignment:
Q  25 gttattttctttatatatagtatagatata 54  Q
    ||||||||||||||||||||||||||||||    
T  36226245 gttattttctttatatatagtatagatata 36226216  T

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Target: chr5; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 19 - 51
Target Start/End: Complemental strand, 9523688 - 9523656
Alignment:
Q  19 aaagatgttattttctttatatatagtatagat 51  Q
    ||||||||||||||||||||||||| |||||||    
T  9523688 aaagatgttattttctttatatataatatagat 9523656  T

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Target: chr5; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 19 - 55
Target Start/End: Complemental strand, 13999007 - 13998971
Alignment:
Q  19 aaagatgttattttctttatatatagtatagatatag 55  Q
    ||||| |||||||||| ||||||||||||||||||||    
T  13999007 aaagaggttattttctctatatatagtatagatatag 13998971  T

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Target: scaffold0128 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: scaffold0128
Description:

Target: scaffold0128; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 27 - 55
Target Start/End: Original strand, 43423 - 43451
Alignment:
Q  27 tattttctttatatatagtatagatatag 55  Q
    |||||||||||||||||||||||||||||    
T  43423 tattttctttatatatagtatagatatag 43451  T

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