View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF15960_high_3 (Length: 706)
Name: NF15960_high_3
Description: NF15960
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15960_high_3 |
 | |
|
Alignment Details
Target: chr6 (Bit Score: 610; Significance: 0; HSPs: 9)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 610; E-Value: 0
Query Start/End: Original strand, 1 - 692
Target Start/End: Original strand, 31188484 - 31189175
Alignment:
| Q |
1 |
cccacactaaagttccacacccacctacccacaagaaaaaacctccctacatcaatcaaagttgccaacgcagcaagaagaaaccatcataaaccatcct |
100 |
Q |
| |
|
||||||||||||||||||| ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| | |
|
|
| T |
31188484 |
cccacactaaagttccacatccacctacccacaagaaaaaacctccctacatcgatcaaagttgccaacgcagcaagaagaaaccatcataaaccatc-t |
31188582 |
T |
|
| Q |
101 |
atctaaaaacaaattcatagcaaaagatactaggaacacagaaacatgaagcacaaaaagaatatgcaaggcagcaccgaaacagaaacaaaaacatcac |
200 |
Q |
| |
|
|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
31188583 |
atctaaaatcaaattcatagcaaaagatactaggaacacagaaacatgaagcacaaaaagaatatgcaaggcagcaccgaaacagaaacaaaaacatcac |
31188682 |
T |
|
| Q |
201 |
aaaaactgccaatgcaaagcaccaaaagaagaggggcatcacatatataatagtagacaagttaaaatattagatcacctnnnnnnnnn-ttcgatgcta |
299 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
|
|
| T |
31188683 |
aaaaactgccaatgcaaagcaccaaaagaagaggggcatcacatatataatagtagacaagttaaaatattagatcacctaaaaaaaaaattcgatgcta |
31188782 |
T |
|
| Q |
300 |
ttatttttggagaatatgaatattttaatcatatacctaatattttcattacacatattaaggatatgacttaatcacggcttactagttacttccacat |
399 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
|
|
| T |
31188783 |
ttatttttggagaatatgaatattttaatcatatacctaatattttcattacacatattaaggatatgacttaatcacgacttactagttacttccacat |
31188882 |
T |
|
| Q |
400 |
aagataaaatcattttctagtatagcttgttctccatttgtagcatacgcagcaaccaacttctaaaggatttaagatgataacattatgaattgttaat |
499 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| || |
|
|
| T |
31188883 |
aagataaaatcattttctagtatagcttgttctccatttgtagcatacgcagcaaccaacttctaaatgatttaagatgataacattatgaattgttcat |
31188982 |
T |
|
| Q |
500 |
gactttgcataagtataaaaactattcgagacatacacttgaacctaattgcttcacaagatgattaaaagggtggagagtgtcttcatttgaagaggtt |
599 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
31188983 |
gactttgcataagtataaaaactattcgagacatacacttgaacctaatttcttcacaagatgattaaaagggtggagagtgtcttcatttgaagaggtt |
31189082 |
T |
|
| Q |
600 |
accaactctgattaaaagatatataacaattatacttaccctcaaatattaagacttagaagactctgatattgacctagtaggtgaagaaag |
692 |
Q |
| |
|
| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
|
|
| T |
31189083 |
atcaactttgattaaaagatatataacaattatacttaccctcaaatattaagacttaaaagactctgatattgacctagtaggtgaagaaag |
31189175 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 483; E-Value: 0
Query Start/End: Original strand, 156 - 692
Target Start/End: Original strand, 31200445 - 31200982
Alignment:
| Q |
156 |
aaaagaatatgcaaggcagcaccgaaacagaaacaaaaacatcacaaaaactgccaatgcaaagcaccaaaagaagaggggcatcacatatataatagta |
255 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
31200445 |
aaaagaatatgcaaggcagcaccgaaacagaaacaaaaacatcacaaaaactgccaatgcaaagcaccaaaagaagaggggcatcacatatataatagta |
31200544 |
T |
|
| Q |
256 |
gacaagttaaaatattagatcacctnnnnnnnnn-ttcgatgctattatttttggagaatatgaatattttaatcatatacctaatattttcattacaca |
354 |
Q |
| |
|
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
31200545 |
gacaagttaaaatattagatcacctaaaaaaaaaattcgatgctattatttttggagaatatgaatattttaatcatatacctaatattttcattacaca |
31200644 |
T |
|
| Q |
355 |
tattaaggatatgacttaatcacggcttactagttacttccacataagataaaatcattttctagtatagcttgttctccatttgtagcatacgcagcaa |
454 |
Q |
| |
|
|||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
31200645 |
tattaaggatatgacttaatcacgacttactagttacttccacataagataaaatcattttctagtatagcttgttctccatttgtagcatacgcagcaa |
31200744 |
T |
|
| Q |
455 |
ccaacttctaaaggatttaagatgataacattatgaattgttaatgactttgcataagtataaaaactattcgagacatacacttgaacctaattgcttc |
554 |
Q |
| |
|
|||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
31200745 |
ccaacttctaaatgatttaagatgataacattatgaattgttcatgactttgcataagtataaaaactattcgagacatacacttgaacctaattgcttc |
31200844 |
T |
|
| Q |
555 |
acaagatgattaaaagggtggagagtgtcttcatttgaagaggttaccaactctgattaaaagatatataacaattatacttaccctcaaatattaagac |
654 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
31200845 |
acaaaatgattaaaagggtggagagtgtcttcatttgaagaggttaccaactctgattaaaagatatataacaattatacttaccctcaaatattaagac |
31200944 |
T |
|
| Q |
655 |
ttagaagactctgatattgacctagtaggtgaagaaag |
692 |
Q |
| |
|
||| |||||||||||||||||||||||||||||||||| |
|
|
| T |
31200945 |
ttaaaagactctgatattgacctagtaggtgaagaaag |
31200982 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 123; E-Value: 8e-63
Query Start/End: Original strand, 1 - 127
Target Start/End: Original strand, 31200324 - 31200450
Alignment:
| Q |
1 |
cccacactaaagttccacacccacctacccacaagaaaaaacctccctacatcaatcaaagttgccaacgcagcaagaagaaaccatcataaaccatcct |
100 |
Q |
| |
|
||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
31200324 |
cccacactaaagttccacatccacctacccacaagaaaaaacctccctacatcaatcaaagttgccaacgcagcaagaagaaaccatcataaaccatcct |
31200423 |
T |
|
| Q |
101 |
atctaaaaacaaattcatagcaaaaga |
127 |
Q |
| |
|
||||||||||||||||||||||||||| |
|
|
| T |
31200424 |
atctaaaaacaaattcatagcaaaaga |
31200450 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 65; E-Value: 3e-28
Query Start/End: Original strand, 534 - 642
Target Start/End: Original strand, 31144935 - 31145043
Alignment:
| Q |
534 |
acacttgaacctaattgcttcacaagatgattaaaagggtggagagtgtcttcatttgaagaggttaccaactctgattaaaagatatataacaattata |
633 |
Q |
| |
|
|||||| |||| ||| ||||||||||||||||||||||||||||| ||| |||||||||| ||||| | |||||| |||||| |||||||||||||||| |
|
|
| T |
31144935 |
acacttaaacccaatagcttcacaagatgattaaaagggtggagattgttatcatttgaagtggttatccactctgtttaaaatatatataacaattata |
31145034 |
T |
|
| Q |
634 |
cttaccctc |
642 |
Q |
| |
|
||||||||| |
|
|
| T |
31145035 |
cttaccctc |
31145043 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 372 - 446
Target Start/End: Original strand, 31170908 - 31170982
Alignment:
| Q |
372 |
aatcacggcttactagttacttccacataagataaaatcattttctagtatagcttgttctccatttgtagcata |
446 |
Q |
| |
|
||||||||||| ||||| |||||||||||| |||||| ||||||||||||||||||||||||||||||||||||| |
|
|
| T |
31170908 |
aatcacggctttctagtgacttccacataaaataaaaacattttctagtatagcttgttctccatttgtagcata |
31170982 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 389 - 488
Target Start/End: Original strand, 31144770 - 31144869
Alignment:
| Q |
389 |
tacttccacataagataaaatcattttctagtatagcttgttctccatttgtagcatacgcagcaaccaacttctaaaggat-ttaagatgataacatta |
487 |
Q |
| |
|
|||||||| ||||||||||| ||||||||||||| | ||||||||| |||||||||| |||||||| |||||||||||| | | ||||||||||||||| |
|
|
| T |
31144770 |
tacttccaaataagataaaaatattttctagtataacatgttctcca-ttgtagcatatgcagcaacaaacttctaaaggttataaagatgataacatta |
31144868 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #7
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 648 - 692
Target Start/End: Original strand, 31145073 - 31145117
Alignment:
| Q |
648 |
ttaagacttagaagactctgatattgacctagtaggtgaagaaag |
692 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| |||||||| |
|
|
| T |
31145073 |
ttaagacttagaagactctgatattgacctagtaggagaagaaag |
31145117 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #8
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 382 - 493
Target Start/End: Complemental strand, 31225277 - 31225168
Alignment:
| Q |
382 |
tactagttacttccacataagataaaatcattttctagtatagcttgttctccatttgtagcatacgcagcaaccaacttctaaaggatttaagatgata |
481 |
Q |
| |
|
|||||||| ||||||||||||||||| | |||| |||||||||||||| | |||||||||| || |||| ||||||| |||||||| || |||| || |
|
|
| T |
31225277 |
tactagttgcttccacataagataaact--ttttgtagtatagcttgtttttcatttgtagcttatgcagtcgccaacttataaaggatatatgatgtta |
31225180 |
T |
|
| Q |
482 |
acattatgaatt |
493 |
Q |
| |
|
| ||||| |||| |
|
|
| T |
31225179 |
aaattataaatt |
31225168 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #9
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 534 - 600
Target Start/End: Original strand, 31171328 - 31171394
Alignment:
| Q |
534 |
acacttgaacctaattgcttcacaagatgattaaaagggtggagagtgtcttcatttgaagaggtta |
600 |
Q |
| |
|
|||||||||| |||||||| |||||| ||||||| || |||||| |||||||||||||| |||||| |
|
|
| T |
31171328 |
acacttgaactcaattgcttaacaagaagattaaagggatggagattgtcttcatttgaaaaggtta |
31171394 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University