View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15960_high_35 (Length: 360)
Name: NF15960_high_35
Description: NF15960
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15960_high_35 |
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Alignment Details
Target: chr4 (Bit Score: 275; Significance: 1e-154; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 275; E-Value: 1e-154
Query Start/End: Original strand, 17 - 349
Target Start/End: Complemental strand, 48490643 - 48490299
Alignment:
| Q |
17 |
atattcatcattcatagcataacaaacaaacgaacatgttgtaaacattcggtttttaactcaaaatctgcaagaacctggatttgaatctcgttgccta |
116 |
Q |
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| T |
48490643 |
atattcatcattcatatcataacaaacaaacgaacatgttgtaaacattcggtttttaactcaaaatctgcaagaacctggatttgaatctcgttgccta |
48490544 |
T |
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| Q |
117 |
ttaggttcaacaaagagagcaaaggatatattcaaaatacttcatcttctttaatcattgataatgttttacaaaagtctcttctggagaagaagcccca |
216 |
Q |
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| T |
48490543 |
ttaggttcaagaaagagagcaaaggatatattcaaaatacttcatcttctttaatcattgataatgttttacaaaagtctcttctggagaagaagcccca |
48490444 |
T |
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| Q |
217 |
aaagaatcgcactgtacatttcaattcaacatacacaagtctt------------gttttagatttttccatgccaactcgtgcctaccaagctaattca |
304 |
Q |
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||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
48490443 |
aaagaatcgcactgtacatttcaattcaacatacacaagtcttgtattagtcaaagttttagatttttccatgccaactcgtgcctaccaagctaattca |
48490344 |
T |
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| Q |
305 |
agttaaaaatcaatttgaccnnnnnnnttatatcttctaccctat |
349 |
Q |
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|||||||||||||||||||| |||||||||||||||||| |
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| T |
48490343 |
agttaaaaatcaatttgaccaaaaaaattatatcttctaccctat |
48490299 |
T |
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