View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF15960_high_37 (Length: 348)
Name: NF15960_high_37
Description: NF15960
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15960_high_37 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 310; Significance: 1e-174; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 310; E-Value: 1e-174
Query Start/End: Original strand, 1 - 330
Target Start/End: Complemental strand, 2796165 - 2795836
Alignment:
| Q |
1 |
cactatggccagtaacaacaattccctcaccacatgagtcatactgtggccttccggcacgacccaacatctgcatcacatcaagaggactcaattcagt |
100 |
Q |
| |
|
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2796165 |
cactatggccagtaacaacaattcccataccacatgagtcatactgtggccttccggcacgacccaacatctgcatcacatcaagaggactcaattcagt |
2796066 |
T |
|
| Q |
101 |
ccatgctcccttttcaggattataaatctttgtccctttaattataaccgtatgagccgggagattcacaccccaggcaagggtagcagtggataccaaa |
200 |
Q |
| |
|
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2796065 |
ccatgctcctctttcaggattataaatctttgtccctttaattataaccgtatgagccgggagattcacaccccaggcaagggtagcagtggataccaaa |
2795966 |
T |
|
| Q |
201 |
acttgaacatgtccagaagcgaaaagatcctcaacgagctggcgatctgttcttgtcataccagcatgatgaatagcaaaaccatatggcagaagatctt |
300 |
Q |
| |
|
|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2795965 |
acttgaacatgtccagaagcaaaaagatcctcaacgagctggcgatctgttcttgtcataccagcatgatgaatagcaaaaccatatggcagaagatctt |
2795866 |
T |
|
| Q |
301 |
tgagatcattgctcttcacaagatcggtat |
330 |
Q |
| |
|
|||||||||||||||||||||||||||||| |
|
|
| T |
2795865 |
tgagatcattgctcttcacaagatcggtat |
2795836 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 186; Significance: 1e-100; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 186; E-Value: 1e-100
Query Start/End: Original strand, 1 - 330
Target Start/End: Complemental strand, 29263678 - 29263349
Alignment:
| Q |
1 |
cactatggccagtaacaacaattccctcaccacatgagtcatactgtggccttccggcacgacccaacatctgcatcacatcaagaggactcaattcagt |
100 |
Q |
| |
|
|||| ||||| |||| || ||||||||||||| | |||||||| || ||||||||||||||||||||||||||||| || ||||| ||||||| |||||| |
|
|
| T |
29263678 |
cactgtggcccgtaagaataattccctcaccataagagtcatattgaggccttccggcacgacccaacatctgcataacgtcaagtggactcagttcagt |
29263579 |
T |
|
| Q |
101 |
ccatgctcccttttcaggattataaatctttgtccctttaattataaccgtatgagccgggagattcacaccccaggcaagggtagcagtggataccaaa |
200 |
Q |
| |
|
||| || |||||||| ||||||||||||| |||||||||||||||||| || ||||| || |||||||||||||| |||||||| ||||||||||||||| |
|
|
| T |
29263578 |
ccaggcccccttttcgggattataaatctgtgtccctttaattataacagtgtgagctggaagattcacaccccatgcaagggtggcagtggataccaaa |
29263479 |
T |
|
| Q |
201 |
acttgaacatgtccagaagcgaaaagatcctcaacgagctggcgatctgttcttgtcataccagcatgatgaatagcaaaaccatatggcagaagatctt |
300 |
Q |
| |
|
|||||| |||||||| |||||| ||||||||||| || ||||||||||| || |||||||||||||||||||||||||||||||| ||||||||||||| |
|
|
| T |
29263478 |
acttgagcatgtccatcagcgaacagatcctcaacaagttggcgatctgtcctcgtcataccagcatgatgaatagcaaaaccatacggcagaagatctt |
29263379 |
T |
|
| Q |
301 |
tgagatcattgctcttcacaagatcggtat |
330 |
Q |
| |
|
| || ||| | |||||||||||||| |||| |
|
|
| T |
29263378 |
taaggtcactactcttcacaagatcagtat |
29263349 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University