View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15960_high_39 (Length: 331)
Name: NF15960_high_39
Description: NF15960
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15960_high_39 |
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Alignment Details
Target: chr2 (Bit Score: 161; Significance: 8e-86; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 161; E-Value: 8e-86
Query Start/End: Original strand, 9 - 195
Target Start/End: Complemental strand, 34657425 - 34657242
Alignment:
| Q |
9 |
aaaatgcaactggggcctctgctttagccaattcaattcaatgataataataacgtgattcatgcaatgaattaaaaattaatttaaagccaactttcat |
108 |
Q |
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| T |
34657425 |
aaaatgcaactggggcctctgctttagccaattcaattcaatgataataataacgtgattcatgcaatgaattaaaaaataatttaaagccaactttcat |
34657326 |
T |
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| Q |
109 |
tgttttacgaaaacttatatgaataataaataacaaaattaacaatatttccaaattattgaaaatgttacacgtttttagttgtca |
195 |
Q |
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|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||| |
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| T |
34657325 |
tgttttacgaaaacttatatga---ataaataacaaaattaacaatatttccaaattattgaaaatgttacacgtttctggttgtca |
34657242 |
T |
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