View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF15960_high_42 (Length: 317)

Name: NF15960_high_42
Description: NF15960
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF15960_high_42
NF15960_high_42
[»] chr4 (4 HSPs)
chr4 (3-301)||(19799763-19800067)
chr4 (25-302)||(17131263-17131538)
chr4 (1-208)||(8121618-8121832)
chr4 (28-295)||(14040480-14040745)
[»] chr2 (5 HSPs)
chr2 (46-302)||(34978208-34978462)
chr2 (1-223)||(19914611-19914836)
chr2 (184-292)||(28019056-28019164)
chr2 (58-292)||(20482023-20482257)
chr2 (255-302)||(19914553-19914600)
[»] chr7 (1 HSPs)
chr7 (25-302)||(1529165-1529440)
[»] chr6 (1 HSPs)
chr6 (184-292)||(6344027-6344135)
[»] chr5 (2 HSPs)
chr5 (184-292)||(16989188-16989296)
chr5 (130-302)||(26491902-26492074)
[»] chr3 (1 HSPs)
chr3 (130-302)||(55311739-55311911)


Alignment Details
Target: chr4 (Bit Score: 227; Significance: 1e-125; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 227; E-Value: 1e-125
Query Start/End: Original strand, 3 - 301
Target Start/End: Complemental strand, 19800067 - 19799763
Alignment:
Q  3 aaagatcttggtaccctcaaat--------ggacttgaagttgcttattcacaaagtggtatttctctctatgtcagagaaagtattgtttggatttact 94  Q
    ||||||||||||||||||||||        |||||||||||||||||||| |||||||||||||||||  ||||||||||||||| ||||||||||||||    
T  19800067 aaagatcttggtaccctcaaatatttcttaggacttgaagttgcttattcccaaagtggtatttctct--atgtcagagaaagtactgtttggatttact 19799970  T
Q  95 acaagattatggtcttctttgtactaaaccagtcactacaccttctgatccatctatcaagttacacaatgatagttcaaatgctttccctgatgtttct 194  Q
    |||||||||||||||| ||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||    
T  19799969 acaagattatggtcttttttgtactaaaccagacactacaccttctgatccatctatcaggttacacaatgatagttcaaatgctttccctgatgtttct 19799870  T
Q  195 gcttgtagaaggttgataggaagattgatcaatttgaatacaacaagaccagacataactttcataacacaacaactcagtcaatttttgagtaaaccta 294  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |||||||||||||||||| | |||||| |||||||||||||||    
T  19799869 gcttgtagaaggttgataggaagattgatcaatttgaatacaacaagaccatacatcactttcataacacaacaattaagtcaacttttgagtaaaccta 19799770  T
Q  295 ctcaaac 301  Q
    |||||||    
T  19799769 ctcaaac 19799763  T

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Target: chr4; HSP #2
Raw Score: 119; E-Value: 8e-61
Query Start/End: Original strand, 25 - 302
Target Start/End: Original strand, 17131263 - 17131538
Alignment:
Q  25 ggacttgaagttgcttattcacaaagtggtatttctctctatgtcagagaaagtattgtttggatttactacaagattatggtcttctttgtactaaacc 124  Q
    ||||||||||||||| |||||||| |||||||||||||  ||| |||||||| |||||| |||||||  |||| ||||  ||||||||  || | |||||    
T  17131263 ggacttgaagttgctcattcacaaggtggtatttctct--atgccagagaaaatattgtctggatttgttacatgattcaggtcttctgggttccaaacc 17131360  T
Q  125 agtcactacaccttctgatccatctatcaagttacacaatgatagttcaaatgctttccctgatgtttctgcttgtagaaggttgataggaagattgatc 224  Q
     || |||||||| || ||||| || ||||| ||||||||||||||||||| |  |||||||||| ||||||||| |||||| |||||||| |||||||||    
T  17131361 ggttactacaccatcagatccttccatcaaattacacaatgatagttcaactcttttccctgatatttctgcttatagaagattgatagggagattgatc 17131460  T
Q  225 aatttgaatacaacaagaccagacataactttcataacacaacaactcagtcaatttttgagtaaacctactcaaact 302  Q
     | ||||||||||| ||||||||||| || || || || || ||||||||||||||||||||||||||||||||||||    
T  17131461 tacttgaatacaaccagaccagacatcacctttatcacccatcaactcagtcaatttttgagtaaacctactcaaact 17131538  T

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Target: chr4; HSP #3
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 1 - 208
Target Start/End: Complemental strand, 8121832 - 8121618
Alignment:
Q  1 tcaaagatcttggtaccctcaaat---------ggacttgaagttgcttattcacaaagtggtatttctctctatgtcagagaaagtattgtttggattt 91  Q
    ||||||||||||||||||||||||         ||||||||||||||| |||| |||||||| ||||||||  ||||||||||||||||||| |||||||    
T  8121832 tcaaagatcttggtaccctcaaatatttttttaggacttgaagttgctcattcccaaagtggcatttctct--atgtcagagaaagtattgtctggattt 8121735  T
Q  92 actacaagattatggtcttctttgtactaaaccagtcactacaccttctgatccatctatcaagttacaca--atgatagttcaaatgctttccctgatg 189  Q
    | | ||||| |  || |||||| || | |||||||| ||  |||||||||| ||||||||||||||||| |  |||||||||||||||||||||||||||    
T  8121734 attgcaagactcggggcttcttggttccaaaccagttac--caccttctgacccatctatcaagttacatataatgatagttcaaatgctttccctgatg 8121637  T
Q  190 tttctgcttgtagaaggtt 208  Q
    ||| ||||| |||||||||    
T  8121636 tttatgcttatagaaggtt 8121618  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 57; E-Value: 8e-24
Query Start/End: Original strand, 28 - 295
Target Start/End: Original strand, 14040480 - 14040745
Alignment:
Q  28 cttgaagttgcttattcacaaagtggtatttctctctatgtcagagaaagtattgtttggatttactacaagattatggtcttctttgtactaaaccagt 127  Q
    |||||||||||| |||| ||||||||||||||| | |  |||| ||||| |||||| |||||||| | || ||||  ||  | ||| |  | ||||| ||    
T  14040480 cttgaagttgctcattctcaaagtggtatttctttgt--gtcaaagaaaatattgtctggatttattgcatgatttaggattgcttggctcaaaacctgt 14040577  T
Q  128 cactacaccttctgatccatctatcaagttacacaatgatagttcaaatgctttccctgatgtttctgcttgtagaaggttgataggaagattgatcaat 227  Q
     ||||||||||||||||| || ||||||||||||||||||||||||     |||| ||||||||||||||| ||||||  |  | |||||| ||||  ||    
T  14040578 tactacaccttctgatccctcaatcaagttacacaatgatagttcaccacttttcgctgatgtttctgcttatagaagactagtgggaagactgatatat 14040677  T
Q  228 ttgaatacaacaagaccagacataactttcataacacaacaactcagtcaatttttgagtaaacctac 295  Q
    ||||| || || ||||| || || || ||||| || |||||||| ||||||||| | |||||||||||    
T  14040678 ttgaacaccactagacctgatattacattcatcactcaacaacttagtcaatttctcagtaaacctac 14040745  T

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Target: chr2 (Bit Score: 126; Significance: 6e-65; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 126; E-Value: 6e-65
Query Start/End: Original strand, 46 - 302
Target Start/End: Complemental strand, 34978462 - 34978208
Alignment:
Q  46 caaagtggtatttctctctatgtcagagaaagtattgtttggatttactacaagattatggtcttctttgtactaaaccagtcactacaccttctgatcc 145  Q
    ||||||||||||||||| |||  || |||||||||||| |||| ||| |||||||||   |||| ||| || |||||||| |||||||||||||||||||    
T  34978462 caaagtggtatttctctatat--catagaaagtattgtctggacttattacaagattcatgtctccttggttctaaaccaatcactacaccttctgatcc 34978365  T
Q  146 atctatcaagttacacaatgatagttcaaatgctttccctgatgtttctgcttgtagaaggttgataggaagattgatcaatttgaatacaacaagacca 245  Q
    ||||||||||||||| ||||||| || |||||| ||| ||||||||||||||| ||||||||| |||||||| |||||  || ||||||||||||| | |    
T  34978364 atctatcaagttacataatgataattaaaatgcattcactgatgtttctgcttatagaaggttaataggaaggttgatttatctgaatacaacaagccga 34978265  T
Q  246 gacataactttcataacacaacaactcagtcaatttttgagtaaacctactcaaact 302  Q
     |||| ||||||||||| ||||||||||| || ||||||||||||||||||||||||    
T  34978264 tacatcactttcataactcaacaactcagccagtttttgagtaaacctactcaaact 34978208  T

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Target: chr2; HSP #2
Raw Score: 101; E-Value: 5e-50
Query Start/End: Original strand, 1 - 223
Target Start/End: Complemental strand, 19914836 - 19914611
Alignment:
Q  1 tcaaagatcttggtaccctcaaat--------ggacttgaagttgcttattcacaaagtggtatttctctctatgtcagagaaagtattgtttggattta 92  Q
    ||||||||||||||||||||||||        ||||||||||||||| |||| || ||||||||||||||  ||||||||||||||||||||||||||||    
T  19914836 tcaaagatcttggtaccctcaaatattttttaggacttgaagttgctcattctcagagtggtatttctct--atgtcagagaaagtattgtttggattta 19914739  T
Q  93 ctacaagattatggtcttctttgtactaaaccagtcactacaccttctgatccatctatcaagttacacaatgatagttcaaatgctttccctgatgttt 192  Q
    || |||||||  ||| | ||| || ||||||||||||||||||   |||| |||||||| |||||||| ||||||||| ||||||  ||| |||||||||    
T  19914738 ctgcaagattcaggtttccttggttctaaaccagtcactacac---ctgacccatctattaagttacataatgatagtccaaatgtattcactgatgttt 19914642  T
Q  193 ctgcttgtagaaggttgataggaagattgat 223  Q
     ||||| ||||||||||||||||||||||||    
T  19914641 atgcttatagaaggttgataggaagattgat 19914611  T

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Target: chr2; HSP #3
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 184 - 292
Target Start/End: Original strand, 28019056 - 28019164
Alignment:
Q  184 ctgatgtttctgcttgtagaaggttgataggaagattgatcaatttgaatacaacaagaccagacataactttcataacacaacaactcagtcaattttt 283  Q
    ||||||| |||||||  ||||| ||| | || ||||||||| || | || ||||| || || ||||| || |||||||| ||||| ||||||||||||||    
T  28019056 ctgatgtctctgcttacagaagattggttgggagattgatctatctcaacacaactaggcctgacattacattcataactcaacagctcagtcaattttt 28019155  T
Q  284 gagtaaacc 292  Q
    |||||||||    
T  28019156 gagtaaacc 28019164  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 58 - 292
Target Start/End: Complemental strand, 20482257 - 20482023
Alignment:
Q  58 tctctctatgtcagagaaagtattgtttggatttactacaagattatggtcttctttgtactaaaccagtcactacaccttctgatccatctatcaagtt 157  Q
    ||||||| || ||||| ||||||||| |||||||  |||||||||  ||| | ||| |  | || || || || |||||||| |||||||| || |||||    
T  20482257 tctctctttgccagaggaagtattgtctggatttgttacaagattcaggtttacttggctcaaagcctgttaccacaccttcagatccatccattaagtt 20482158  T
Q  158 acacaatgatagttcaaatgctttccctgatgtttctgcttgtagaaggttgataggaagattgatcaatttgaatacaacaagaccagacataactttc 257  Q
     |||||||| | ||||      ||| ||||||| |||||||  ||||| ||| | || ||||||||| || | || ||||| || || ||||| || |||    
T  20482157 gcacaatgacacttcaccactcttcactgatgtctctgcttacagaagattggttgggagattgatctatctcaacacaactaggcctgacattacattc 20482058  T
Q  258 ataacacaacaactcagtcaatttttgagtaaacc 292  Q
    ||||| ||||| || ||||||||||||||||||||    
T  20482057 ataactcaacagcttagtcaatttttgagtaaacc 20482023  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 255 - 302
Target Start/End: Complemental strand, 19914600 - 19914553
Alignment:
Q  255 ttcataacacaacaactcagtcaatttttgagtaaacctactcaaact 302  Q
    |||||||| ||||| || ||| ||||||||||||||||||||||||||    
T  19914600 ttcataactcaacagctaagtaaatttttgagtaaacctactcaaact 19914553  T

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Target: chr7 (Bit Score: 83; Significance: 3e-39; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 25 - 302
Target Start/End: Complemental strand, 1529440 - 1529165
Alignment:
Q  25 ggacttgaagttgcttattcacaaagtggtatttctctctatgtcagagaaagtattgtttggatttactacaagattatggtcttctttgtactaaacc 124  Q
    |||||| |||||||| |||| || ||||| |||||| |  |||||| ||||| |||||||||||||| || || ||||  ||| | ||| || | |||||    
T  1529440 ggacttcaagttgctcattcccacagtggcatttcttt--atgtcaaagaaaatattgtttggatttgctgcatgattcaggtatccttggttccaaacc 1529343  T
Q  125 agtcactacaccttctgatccatctatcaagttacacaatgatagttcaaatgctttccctgatgtttctgcttgtagaaggttgataggaagattgatc 224  Q
     || ||||||||||||||||| || ||||| ||||||||||||| ||||  |   ||  ||||||||||||| | ||||||||| ||||||||||||||     
T  1529342 tgttactacaccttctgatccctccatcaaattacacaatgataattcacctctctttactgatgtttctgcatatagaaggttaataggaagattgatt 1529243  T
Q  225 aatttgaatacaacaagaccagacataactttcataacacaacaactcagtcaatttttgagtaaacctactcaaact 302  Q
     || |||| ||||| ||||| ||||| |||||||| || |||||||||||||||||||| || |||||||| ||||||    
T  1529242 tatctgaacacaactagacctgacattactttcattactcaacaactcagtcaattttttagaaaacctacacaaact 1529165  T

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Target: chr6 (Bit Score: 37; Significance: 0.000000000007; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 184 - 292
Target Start/End: Original strand, 6344027 - 6344135
Alignment:
Q  184 ctgatgtttctgcttgtagaaggttgataggaagattgatcaatttgaatacaacaagaccagacataactttcataacacaacaactcagtcaattttt 283  Q
    ||||||| |||||||  ||||| ||| | || ||||||||| || | || ||||| || || ||||| || |||||||| ||||| ||||||||||||||    
T  6344027 ctgatgtctctgcttacagaagattggttgggagattgatctatctcaacacaactaggcctgacattacattcataactcaacagctcagtcaattttt 6344126  T
Q  284 gagtaaacc 292  Q
    |||||||||    
T  6344127 gagtaaacc 6344135  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 37; Significance: 0.000000000007; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 184 - 292
Target Start/End: Complemental strand, 16989296 - 16989188
Alignment:
Q  184 ctgatgtttctgcttgtagaaggttgataggaagattgatcaatttgaatacaacaagaccagacataactttcataacacaacaactcagtcaattttt 283  Q
    ||||||| |||||||  ||||| ||| | || ||||||||| || | || ||||| || || ||||| || |||||||| ||||| ||||||||||||||    
T  16989296 ctgatgtctctgcttacagaagattggttgggagattgatctatctcaacacaactaggcctgacattacattcataactcaacagctcagtcaattttt 16989197  T
Q  284 gagtaaacc 292  Q
    |||||||||    
T  16989196 gagtaaacc 16989188  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 130 - 302
Target Start/End: Original strand, 26491902 - 26492074
Alignment:
Q  130 ctacaccttctgatccatctatcaagttacacaatgatagttcaaatgctttccctgatgtttctgcttgtagaaggttgataggaagattgatcaattt 229  Q
    ||||||| |||||||| ||||||||  | || |||||||  |||  | ||||| ||||||||||  | | ||||||  | || || ||||||||  | ||    
T  26491902 ctacaccctctgatccctctatcaaactccataatgatacctcacctcctttctctgatgtttcaacctatagaagacttattggcagattgatttactt 26492001  T
Q  230 gaatacaacaagaccagacataactttcataacacaacaactcagtcaatttttgagtaaacctactcaaact 302  Q
    ||||||||| ||||| ||||| |||||||| || |||||| | ||||| ||| | || ||||| |||||||||    
T  26492002 gaatacaaccagacctgacattactttcattacccaacaattgagtcagtttcttagcaaaccaactcaaact 26492074  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 130 - 302
Target Start/End: Original strand, 55311739 - 55311911
Alignment:
Q  130 ctacaccttctgatccatctatcaagttacacaatgatagttcaaatgctttccctgatgtttctgcttgtagaaggttgataggaagattgatcaattt 229  Q
    ||||||| |||||||| ||||||||  | || |||||||  |||  | ||||| |||||||||| || | ||||||  | || || ||||||||  | ||    
T  55311739 ctacaccctctgatccctctatcaaactccataatgatacctcacctcctttctctgatgtttcagcctatagaagacttattggcagattgatttactt 55311838  T
Q  230 gaatacaacaagaccagacataactttcataacacaacaactcagtcaatttttgagtaaacctactcaaact 302  Q
    ||||||||| ||||| ||||| |||||||| || |||||| | ||||  ||| | || ||||| |||||||||    
T  55311839 gaatacaaccagacctgacattactttcattacccaacaattgagtctgtttcttagcaaaccaactcaaact 55311911  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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