View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15960_high_43 (Length: 311)
Name: NF15960_high_43
Description: NF15960
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15960_high_43 |
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Alignment Details
Target: chr3 (Bit Score: 139; Significance: 1e-72; HSPs: 5)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 139; E-Value: 1e-72
Query Start/End: Original strand, 18 - 164
Target Start/End: Original strand, 1080233 - 1080379
Alignment:
| Q |
18 |
gaagagaacacacaagggaggctagaagattaaattacattttgttgttcttcttcttggttcttgttattttgctcaatcgcatgtccacacaaggcag |
117 |
Q |
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| T |
1080233 |
gaagagaacacacaagggaggctagaagattaaattacattttgttgttcttcttcttggttcttgttattttgctcaatcgcatgtccactcaaggcag |
1080332 |
T |
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| Q |
118 |
taatatggccatcataacagtaacagagagagagcagtcaattaaca |
164 |
Q |
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| T |
1080333 |
taatgtggccatcataacagtaacagagagagagcagtcaattaaca |
1080379 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 91; E-Value: 4e-44
Query Start/End: Original strand, 178 - 292
Target Start/End: Original strand, 1042670 - 1042784
Alignment:
| Q |
178 |
caaagaatcctgaacaaataacgtctgaagcggatattgcggtcacagatgttggaatccaaaacatagttcgtggtgattcgataaagaaaggagctgt |
277 |
Q |
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| T |
1042670 |
caaagaatcctgaacgaataacgtctgaagcggatattgtggtcacagatgttggaatcccaaacatagttcgtggtgattggataaagaaaggagctgt |
1042769 |
T |
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| Q |
278 |
ggtcattgacatggg |
292 |
Q |
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| T |
1042770 |
cgtcattgatatggg |
1042784 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 187 - 288
Target Start/End: Original strand, 1066809 - 1066910
Alignment:
| Q |
187 |
ctgaacaaataacgtctgaagcggatattgcggtcacagatgttggaatccaaaacatagttcgtggtgattcgataaagaaaggagctgtggtcattga |
286 |
Q |
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| T |
1066809 |
ctgaacaaataacgtctgaagcgaatattgtggtcacatatattggaatccgaaacatagttcgtggtgattggataaagaaaggagctgtggtcattga |
1066908 |
T |
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| Q |
287 |
ca |
288 |
Q |
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|| |
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| T |
1066909 |
ca |
1066910 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 67; E-Value: 9e-30
Query Start/End: Original strand, 218 - 292
Target Start/End: Original strand, 1080411 - 1080485
Alignment:
| Q |
218 |
ggtcacagatgttggaatccaaaacatagttcgtggtgattcgataaagaaaggagctgtggtcattgacatggg |
292 |
Q |
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| T |
1080411 |
ggtcacagatgttggaatcccatacatagttcgtggtgattcgataaagaaaggagctgtggtcattgacatggg |
1080485 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 57 - 164
Target Start/End: Complemental strand, 54037058 - 54036948
Alignment:
| Q |
57 |
ttttgttgttcttcttcttggttcttgttattttgctcaatcgcatgtccacacaaggcagtaatatggccatcataacagta---acagagagagagca |
153 |
Q |
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| T |
54037058 |
ttttgttgttcttcttcatggtttttgttattttgctcaaactcatgtccacatttggcagtagcatggccatcctaacagtaaacagagagagagagca |
54036959 |
T |
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| Q |
154 |
gtcaattaaca |
164 |
Q |
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| T |
54036958 |
atcaattaaca |
54036948 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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