View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15960_high_49 (Length: 294)
Name: NF15960_high_49
Description: NF15960
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15960_high_49 |
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Alignment Details
Target: chr6 (Bit Score: 190; Significance: 1e-103; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 190; E-Value: 1e-103
Query Start/End: Original strand, 2 - 277
Target Start/End: Complemental strand, 5961346 - 5961070
Alignment:
| Q |
2 |
taaatttcaaatcagcttcttgatgctctgtcaaatattgtattggatcataattcagaaccgaaatatcaatagcaaaataagcacttaatcaaacaaa |
101 |
Q |
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| T |
5961346 |
taaatttcaaatcagcttcttgatgctctgtcaaatattgtattggatcataattcagaaccgaaatatcaatagcaaaataagcacttaatcaaacaaa |
5961247 |
T |
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| Q |
102 |
ttcagagatattgagttcaagaaatcttannnnnnnnnnnnnnnnnnnnnnnnngaagctaaaataattagaatcaagagaaaggtggaggcaaatgcta |
201 |
Q |
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| T |
5961246 |
ttcagagatattgagttcaagaaatcttacaaaaatgcaaccaaaaaacaaaaagaagctaaaataattagaagcaagagaaaggtggaggcaaatgcta |
5961147 |
T |
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| Q |
202 |
-ttttattattaattaaagtgatacaaatggcaactatatcccttgaggttataagatcaagctcctccacgaagct |
277 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5961146 |
tttttattattaattaaagtgatacaaatggcaactatatcccttgaggttataagatcaagctcctccacgaagct |
5961070 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 48 - 130
Target Start/End: Complemental strand, 5982720 - 5982638
Alignment:
| Q |
48 |
atcataattcagaaccgaaatatcaatagcaaaataagcacttaatcaaacaaattcagagatattgagttcaagaaatctta |
130 |
Q |
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|||||||||||||||| ||||||||||| ||||||||| ||||||||||||||| ||| |||||||||||||||||||||| |
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| T |
5982720 |
atcataattcagaacccaaatatcaataacaaaataagaacttaatcaaacaaacatagaaatattgagttcaagaaatctta |
5982638 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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