View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF15960_high_57 (Length: 256)

Name: NF15960_high_57
Description: NF15960
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF15960_high_57
NF15960_high_57
[»] chr1 (9 HSPs)
chr1 (7-242)||(2288887-2289122)
chr1 (22-144)||(670986-671108)
chr1 (38-127)||(28239054-28239146)
chr1 (40-105)||(6326786-6326851)
chr1 (42-117)||(47569148-47569226)
chr1 (31-110)||(14508839-14508918)
chr1 (47-124)||(28231490-28231570)
chr1 (56-105)||(677216-677265)
chr1 (56-101)||(21159183-21159228)
[»] chr5 (1 HSPs)
chr5 (56-118)||(1717892-1717954)
[»] chr3 (1 HSPs)
chr3 (39-116)||(47924934-47925011)
[»] chr6 (2 HSPs)
chr6 (56-110)||(24934101-24934155)
chr6 (56-110)||(24941634-24941688)


Alignment Details
Target: chr1 (Bit Score: 236; Significance: 1e-130; HSPs: 9)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 236; E-Value: 1e-130
Query Start/End: Original strand, 7 - 242
Target Start/End: Complemental strand, 2289122 - 2288887
Alignment:
Q  7 gaaatgtatgacatagttttgttgtataacgaaatcatactcaggctcggcaaggatagacttgtaatccaagcctatgatttatattctaaaatgattg 106  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2289122 gaaatgtatgacatagttttgttgtataacgaaatcatactcaggctcggcaaggatagacttgtaatccaagcctatgatttatattctaaaatgattg 2289023  T
Q  107 ttaacaacatcatgcctgattatgacacacatcatcatataacttaaggcttgtgtgttgctgctcaatttaaacaagctatcagcttctttagacaact 206  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2289022 ttaacaacatcatgcctgattatgacacacatcatcatataacttaaggcttgtgtgttgctgctcaatttaaacaagctatcagcttctttagacaact 2288923  T
Q  207 aaactacaccgatccaaaaattggtgttcagttttt 242  Q
    ||||||||||||||||||||||||||||||||||||    
T  2288922 aaactacaccgatccaaaaattggtgttcagttttt 2288887  T

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Target: chr1; HSP #2
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 22 - 144
Target Start/End: Complemental strand, 671108 - 670986
Alignment:
Q  22 gttttgttgtataacgaaatcatactcaggctcggcaaggatagacttgtaatccaagcctatgatttatattctaaaatgattgttaacaacatcatgc 121  Q
    ||||||||| ||||  |||||||| |||||||  |||| ||||||||||||| ||||| ||||| |||||||| | |||||||||||||||| |||  |     
T  671108 gttttgttggataagaaaatcatattcaggctgtgcaaagatagacttgtaaaccaaggctatggtttatattttgaaatgattgttaacaagatcgagt 671009  T
Q  122 ctgattatgacacacatcatcat 144  Q
    |||||| || |||||||||||||    
T  671008 ctgattgtgtcacacatcatcat 670986  T

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Target: chr1; HSP #3
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 38 - 127
Target Start/End: Original strand, 28239054 - 28239146
Alignment:
Q  38 aaatcatactcaggctcggcaaggatagacttgtaatccaagcctatgatttatattctaaaatgat---tgttaacaacatcatgcctgatt 127  Q
    ||||||||  ||||||| |||| ||||||||||||| ||||||||||||||| |||||| |||||||   ||||||||||||||  |||||||    
T  28239054 aaatcatatacaggctctgcaaagatagacttgtaaaccaagcctatgatttgtattctgaaatgattcatgttaacaacatcagccctgatt 28239146  T

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Target: chr1; HSP #4
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 40 - 105
Target Start/End: Complemental strand, 6326851 - 6326786
Alignment:
Q  40 atcatactcaggctcggcaaggatagacttgtaatccaagcctatgatttatattctaaaatgatt 105  Q
    ||||||||||| ||| |||| |||||||||| || |||||||||||||||||||||| ||||||||    
T  6326851 atcatactcagactctgcaaagatagacttgcaaaccaagcctatgatttatattctgaaatgatt 6326786  T

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Target: chr1; HSP #5
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 42 - 117
Target Start/End: Original strand, 47569148 - 47569226
Alignment:
Q  42 catactcaggctcggcaaggatagacttgtaatccaagcctatgatttatattctaaaatgatt---gttaacaacatc 117  Q
    |||| |||| ||| |||| ||||||||||||| |||||||||||||||||||||| ||||||||   ||||||||||||    
T  47569148 catattcagactctgcaaagatagacttgtaaaccaagcctatgatttatattctgaaatgattcacgttaacaacatc 47569226  T

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Target: chr1; HSP #6
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 31 - 110
Target Start/End: Complemental strand, 14508918 - 14508839
Alignment:
Q  31 tataacgaaatcatactcaggctcggcaaggatagacttgtaatccaagcctatgatttatattctaaaatgattgttaa 110  Q
    |||||| | |||||| |||| ||  |||| ||||||| ||||| |||||||||||||||||||||| |||||||||||||    
T  14508918 tataacaatatcatattcagactatgcaaagatagacgtgtaaaccaagcctatgatttatattctgaaatgattgttaa 14508839  T

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Target: chr1; HSP #7
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 47 - 124
Target Start/End: Original strand, 28231490 - 28231570
Alignment:
Q  47 tcaggctcggcaaggatagacttgtaatccaagcctatgatttatattctaaaatgat---tgttaacaacatcatgcctg 124  Q
    |||| ||| |||| ||||||||||| | |||||||||||| ||||||||| |||||||   |||||||||||||| |||||    
T  28231490 tcagactctgcaaagatagacttgttaaccaagcctatgaattatattctgaaatgatttatgttaacaacatcaagcctg 28231570  T

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Target: chr1; HSP #8
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 56 - 105
Target Start/End: Original strand, 677216 - 677265
Alignment:
Q  56 gcaaggatagacttgtaatccaagcctatgatttatattctaaaatgatt 105  Q
    |||| ||||||||||||   ||||||||||||||||||||| ||||||||    
T  677216 gcaaagatagacttgtacatcaagcctatgatttatattctgaaatgatt 677265  T

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Target: chr1; HSP #9
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 56 - 101
Target Start/End: Complemental strand, 21159228 - 21159183
Alignment:
Q  56 gcaaggatagacttgtaatccaagcctatgatttatattctaaaat 101  Q
    |||| ||||||||| ||| |||||||||||||||||||||| ||||    
T  21159228 gcaaagatagacttataaaccaagcctatgatttatattctgaaat 21159183  T

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Target: chr5 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 56 - 118
Target Start/End: Original strand, 1717892 - 1717954
Alignment:
Q  56 gcaaggatagacttgtaatccaagcctatgatttatattctaaaatgattgttaacaacatca 118  Q
    |||| ||||||||||||| |||||||||||||||||||||| |||||||||| || |||||||    
T  1717892 gcaaagatagacttgtaaaccaagcctatgatttatattctgaaatgattgtaaagaacatca 1717954  T

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Target: chr3 (Bit Score: 34; Significance: 0.0000000004; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 39 - 116
Target Start/End: Complemental strand, 47925011 - 47924934
Alignment:
Q  39 aatcatactcaggctcggcaaggatagacttgtaatccaagcctatgatttatattctaaaatgattgttaacaacat 116  Q
    |||||||||||  ||| |||| |||||||| ||||  ||||||||||| || |||||| ||||||||||||| |||||    
T  47925011 aatcatactcaccctctgcaaagatagactagtaaatcaagcctatgacttctattctgaaatgattgttaagaacat 47924934  T

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Target: chr6 (Bit Score: 31; Significance: 0.00000002; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 56 - 110
Target Start/End: Original strand, 24934101 - 24934155
Alignment:
Q  56 gcaaggatagacttgtaatccaagcctatgatttatattctaaaatgattgttaa 110  Q
    ||||||||| ||||||||| || |||| |||||||| |||| |||||||||||||    
T  24934101 gcaaggataaacttgtaattcatgcctctgatttatgttctgaaatgattgttaa 24934155  T

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Target: chr6; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 56 - 110
Target Start/End: Original strand, 24941634 - 24941688
Alignment:
Q  56 gcaaggatagacttgtaatccaagcctatgatttatattctaaaatgattgttaa 110  Q
    ||||||||| ||||||||| || |||| |||||||| |||| |||||||||||||    
T  24941634 gcaaggataaacttgtaattcatgcctctgatttatgttctgaaatgattgttaa 24941688  T

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