View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15960_high_61 (Length: 242)
Name: NF15960_high_61
Description: NF15960
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15960_high_61 |
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Alignment Details
Target: chr5 (Bit Score: 133; Significance: 3e-69; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 133; E-Value: 3e-69
Query Start/End: Original strand, 42 - 225
Target Start/End: Original strand, 43131560 - 43131745
Alignment:
| Q |
42 |
ttgagattgaagaattatcagtgaagacctaatttgatccctgacactcttctcacggtccaataaaagttgcattagatttaatccgaataaaagttgt |
141 |
Q |
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| T |
43131560 |
ttgagattgaagaattttcaatgaagacctaatttgatccctgacactcttctcacggtccaataaaagttgcattagatttaatccgaataaaagttgt |
43131659 |
T |
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| Q |
142 |
atcgtttatttgag-aaaaataaaagttgaaacgtttaggtta-nnnnnnnattttatgtgttgcatcatacaaggaggccaagtt |
225 |
Q |
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| T |
43131660 |
atcgtttatttgagaaaaaaaaaaagttgaaacgtttaggttattttttttattttatgtgttgcatcatataaggaggccaagtt |
43131745 |
T |
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Target: chr1 (Bit Score: 61; Significance: 3e-26; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 40 - 128
Target Start/End: Complemental strand, 48212504 - 48212416
Alignment:
| Q |
40 |
gcttgagattgaagaattatcagtgaagacctaatttgatccctgacactcttctcacggtccaataaaagttgcattagatttaatcc |
128 |
Q |
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| T |
48212504 |
gcttgatattgaagaattttgagtgaagacctaatttgatccatgacactcttctcacagtctaataaaaattgcattagatttaatcc |
48212416 |
T |
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