View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15960_low_11 (Length: 517)
Name: NF15960_low_11
Description: NF15960
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15960_low_11 |
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Alignment Details
Target: chr1 (Bit Score: 190; Significance: 1e-103; HSPs: 9)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 190; E-Value: 1e-103
Query Start/End: Original strand, 120 - 313
Target Start/End: Original strand, 45040921 - 45041114
Alignment:
| Q |
120 |
caataggcaactaccatgattatttttctgattaatttttaccaaaaataatataaaaaatttagatgatgacacagccattaggatcctcttcaacgct |
219 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45040921 |
caataggcaactaccatgattatttttctgattaatttttaccaaaaataatataaaaaatttagatgatgacacagccattaggatcctcttcaacgct |
45041020 |
T |
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| Q |
220 |
tacggcactgttgtaataaggattgtactgtggtttcatctgatgattataataagcaggtgcaccatagaaaatgaaaggatcaattatcaca |
313 |
Q |
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| T |
45041021 |
tacggcactgttgtaataaggattgtactgtggtttcatccgatgattataataagcaggtgcaccatagaaaatgaaaggatcaattatcaca |
45041114 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 100; E-Value: 3e-49
Query Start/End: Original strand, 392 - 503
Target Start/End: Original strand, 45035930 - 45036041
Alignment:
| Q |
392 |
gctggtccaactgaaagtatttcagcatgacataacttccttagcttagccactacacgtactggatcaatatctcctattaaggtcattttcttgtctt |
491 |
Q |
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||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
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| T |
45035930 |
gctggtccaactgaaagtatttctgcatgacataacttccttaacttagccactacacgtattggatcaatatctcctattaaggtcattttcttgtctt |
45036029 |
T |
|
| Q |
492 |
tcatgtctattg |
503 |
Q |
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|||||||||||| |
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| T |
45036030 |
tcatgtctattg |
45036041 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 100; E-Value: 3e-49
Query Start/End: Original strand, 392 - 503
Target Start/End: Original strand, 45041193 - 45041304
Alignment:
| Q |
392 |
gctggtccaactgaaagtatttcagcatgacataacttccttagcttagccactacacgtactggatcaatatctcctattaaggtcattttcttgtctt |
491 |
Q |
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| T |
45041193 |
gctggtccaactgaaagtatttcagcataacaaatcttccttagcttagccactacacgtactggatcaatatctcctattaaggtcattttcttgtctt |
45041292 |
T |
|
| Q |
492 |
tcatgtctattg |
503 |
Q |
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|||||||||||| |
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| T |
45041293 |
tcatgtctattg |
45041304 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 90; E-Value: 3e-43
Query Start/End: Original strand, 1 - 101
Target Start/End: Original strand, 45040794 - 45040895
Alignment:
| Q |
1 |
tttagagtaacatattagtcaagaatgtattacgtacataatgaac-tagcctcatattatataatcaacacgatatacatcaagctacttttacagata |
99 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45040794 |
tttagagtaacatattagtcaagaatgtattacgtacataatgaaaatagcctcatattatataatcaacacgatatacatcaagctacttttacagata |
45040893 |
T |
|
| Q |
100 |
at |
101 |
Q |
| |
|
|| |
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|
| T |
45040894 |
at |
45040895 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 77; E-Value: 2e-35
Query Start/End: Original strand, 392 - 492
Target Start/End: Original strand, 45043254 - 45043354
Alignment:
| Q |
392 |
gctggtccaactgaaagtatttcagcatgacataacttccttagcttagccactacacgtactggatcaatatctcctattaaggtcattttcttgtctt |
491 |
Q |
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|||||||||||||||||||||||||||||||||||||| |||||||||||||||||| ||||||| || ||||||||| |||||||||||||||||||| |
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| T |
45043254 |
gctggtccaactgaaagtatttcagcatgacataactttcttagcttagccactacaagtactgggtcggtatctcctactaaggtcattttcttgtctt |
45043353 |
T |
|
| Q |
492 |
t |
492 |
Q |
| |
|
| |
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|
| T |
45043354 |
t |
45043354 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 73; E-Value: 4e-33
Query Start/End: Original strand, 170 - 311
Target Start/End: Original strand, 45035717 - 45035858
Alignment:
| Q |
170 |
atataaaaaatttagatgatgacacagccattaggatcctcttcaacgcttacggcactgttgtaataaggattgtactgtggtttcatctgatgattat |
269 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| || | |||||| ||||| |||||||||||||||| |
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| T |
45035717 |
atataaaaaatttagatgatgacacagccattaggatcctcttcaacgcttacggcac---ggtagtatgaattgtattgtggattcatctgatgattat |
45035813 |
T |
|
| Q |
270 |
aata---agcaggtgcaccatagaaaatgaaaggatcaattatca |
311 |
Q |
| |
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|||| || ||||| |||||||| |||||||||| |||||||| |
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| T |
45035814 |
aataggtagtaggtgtaccatagagcatgaaaggattaattatca |
45035858 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #7
Raw Score: 64; E-Value: 9e-28
Query Start/End: Original strand, 393 - 492
Target Start/End: Original strand, 46175367 - 46175466
Alignment:
| Q |
393 |
ctggtccaactgaaagtatttcagcatgacataacttccttagcttagccactacacgtactggatcaatatctcctattaaggtcattttcttgtcttt |
492 |
Q |
| |
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|||||||||| ||||||||||| |||||||||||||| |||||||||||||||| | ||||||| || ||||||||| ||||||||||||||||||||| |
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| T |
46175367 |
ctggtccaaccgaaagtatttctgcatgacataactttcttagcttagccactataagtactgggtcggtatctcctactaaggtcattttcttgtcttt |
46175466 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #8
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 135 - 227
Target Start/End: Original strand, 46175121 - 46175219
Alignment:
| Q |
135 |
atgattatttttctgattaa------tttttaccaaaaataatataaaaaatttagatgatgacacagccattaggatcctcttcaacgcttacggcac |
227 |
Q |
| |
|
|||||||||||||||||||| |||||| |||| ||| |||| |||||||||| ||||||||||||||||||||||||||||||||||| ||||| |
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| T |
46175121 |
atgattatttttctgattaaattttttttttatcaaacatagtatataaaatttagaggatgacacagccattaggatcctcttcaacgcttatggcac |
46175219 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #9
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 155 - 227
Target Start/End: Original strand, 45043035 - 45043107
Alignment:
| Q |
155 |
tttttaccaaaaataatataaaaaatttagatgatgacacagccattaggatcctcttcaacgcttacggcac |
227 |
Q |
| |
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|||||| |||| ||| |||| |||||||||| ||||||||||||||||||||||||||||||||||| ||||| |
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| T |
45043035 |
tttttatcaaacatagtatataaaatttagaggatgacacagccattaggatcctcttcaacgcttatggcac |
45043107 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 31; Significance: 0.00000005; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 409 - 503
Target Start/End: Complemental strand, 17995958 - 17995864
Alignment:
| Q |
409 |
tatttcagcatgacataacttccttagcttagccactacacgtactggatcaatatctcctattaaggtcattttcttgtctttcatgtctattg |
503 |
Q |
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||||||||||||||| || ||||||| ||| | ||| |||| || ||||| || ||||| ||||| ||||||||||| || |||||||| |||| |
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| T |
17995958 |
tatttcagcatgacacaatttccttaacttcgacacaacactaacaggatccatgtctccaattaatgtcattttcttatccttcatgtcgattg |
17995864 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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