View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15960_low_13 (Length: 513)
Name: NF15960_low_13
Description: NF15960
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15960_low_13 |
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Alignment Details
Target: chr7 (Bit Score: 174; Significance: 2e-93; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 174; E-Value: 2e-93
Query Start/End: Original strand, 259 - 499
Target Start/End: Original strand, 31459835 - 31460084
Alignment:
| Q |
259 |
tcaatcctaatcaagcaacagtgtccaaaaagttttggccctttgtatttattccttcattctatatacattcttactcttactatatatacagtgacaa |
358 |
Q |
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| T |
31459835 |
tcaatcctaatcaagcaacagtgtccaaaaagatttggccctttgtatttattccttcattatatatacattcttactctttctatatatacagtgacaa |
31459934 |
T |
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| Q |
359 |
agattagccgtatcacaataaagtatgg---------aaataaaagtaaaccgggacaaagagaaccgaataaataatattggagcaaatatgatatgac |
449 |
Q |
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| T |
31459935 |
agattagccgtatcgcaataaagtatggaagaaagaaaaaaaaaagtaaacccagacaaagagaaccgaataactaatgttggagcaaatatgatatgac |
31460034 |
T |
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| Q |
450 |
caaacattcgttttacccctatctcatagcaagggacaaccatgcatgtg |
499 |
Q |
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| T |
31460035 |
caaatattcgttttacccctatcttatagcaagggacaaccatgcatgtg |
31460084 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 156; E-Value: 1e-82
Query Start/End: Original strand, 89 - 322
Target Start/End: Original strand, 31448130 - 31448365
Alignment:
| Q |
89 |
cagcatcatattgcatattaacctctttggagatacatgaaacgattctttccatgcagaataagttatccatccaaagcgccacatacaaata----ct |
184 |
Q |
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| T |
31448130 |
cagcatcatattgcatatcaatgtctttggaaatgcatg---cgactctttccatgcagaataagttatccatccaaagcgccacatacacatatattct |
31448226 |
T |
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| Q |
185 |
-ctaccaatttggccatataattgaatcagctatacatattgagaataatgtcttgactttaatcctacttaaagtcaatcctaatcaagcaacagtgtc |
283 |
Q |
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| T |
31448227 |
actaccaatcttgccatataattgaatcagctatacatattgagaataatgtcttgactttaatcctacttaaagtcaatcctaatcaagcaacagtgtc |
31448326 |
T |
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| Q |
284 |
caaaaagttttggccctttgtatttattccttcattcta |
322 |
Q |
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| T |
31448327 |
caaaaagatttggccctttgtatttattcattcattcta |
31448365 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 143; E-Value: 7e-75
Query Start/End: Original strand, 321 - 495
Target Start/End: Original strand, 31448438 - 31448612
Alignment:
| Q |
321 |
tatatacattcttactcttactatatatacagtgacaaagattagccgtatcacaataaagtatggaaataaaagtaaaccgggacaaagagaaccgaat |
420 |
Q |
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| T |
31448438 |
tatatacattcttactgtttctatatatacagtgacaaagattagccgtatcacaataaagtatggaaaaaaaagtaaacccagacaaagagaaccgaat |
31448537 |
T |
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| Q |
421 |
aaataatattggagcaaatatgatatgaccaaacattcgttttacccctatctcatagcaagggacaaccatgca |
495 |
Q |
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| T |
31448538 |
aaataatgttggagcaaatatgatatgaccaaatattcgttttacctctatctcatagcaagggacaaccatgca |
31448612 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 56; E-Value: 6e-23
Query Start/End: Original strand, 135 - 226
Target Start/End: Original strand, 31457856 - 31457952
Alignment:
| Q |
135 |
tctttccatgcagaataagttatccatccaaagcgccacatacaaata----ct-ctaccaatttggccatataattgaatcagctatacatattga |
226 |
Q |
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| T |
31457856 |
tctttccatgcagaataagttatccatccaaagcgccacatacacatatattctactaccaatcttgccatataattgaatcaactatacatattga |
31457952 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 36; Significance: 0.00000000005; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 1 - 44
Target Start/End: Original strand, 25616668 - 25616711
Alignment:
| Q |
1 |
agtggtatgaggtcaacagattgacacagacgcgggctggtaca |
44 |
Q |
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| T |
25616668 |
agtggtatgaggtcaacagattgcaacagacgcgggctggtaca |
25616711 |
T |
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