View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15960_low_17 (Length: 455)
Name: NF15960_low_17
Description: NF15960
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15960_low_17 |
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Alignment Details
Target: chr1 (Bit Score: 422; Significance: 0; HSPs: 9)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 422; E-Value: 0
Query Start/End: Original strand, 13 - 438
Target Start/End: Original strand, 29719271 - 29719696
Alignment:
| Q |
13 |
attattctcaaactgctgtgctcaagtttgattgaactttgtacatttactcagctgtttctaatttggctgttgcaaacttgcaatgatgaattaatat |
112 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29719271 |
attattctcaaactgctgtgctcaagtttgattgaactttgtacatttactcagctgtttctaatttggctgttgcaaacttgcaatgatgaattaatat |
29719370 |
T |
|
| Q |
113 |
tgattcaatgatcttgatttttccaatgttgtttgatgttaggtagtttgtgtgtgccagcttagcttaaaatatttccctgaattggttgttgtcctcc |
212 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
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| T |
29719371 |
tgattcaatgatcttgatttttccaatgttgtttgatgttaggtagtttgtgtgtgccagcttagcttaaaatatttccctgaattgattgttgtcctcc |
29719470 |
T |
|
| Q |
213 |
ttgaactgatacttaaaacaaaattctagactctttagtttcggcctgtaacactcttttgtgctgcaattaaattgtagaaattactaagtgtatataa |
312 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29719471 |
ttgaactgatacttaaaacaaaattctagactctttagtttcggcctgtaacactcttttgtgctgcaattaaattgtagaaattactaagtgtatataa |
29719570 |
T |
|
| Q |
313 |
caaaaaatattatattttgcttaggttgaaatatttgccttgaaaattcaaaagaaagatgtttctatgtttgaatatttgaccgacttttactggacat |
412 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29719571 |
caaaaaatattatattttgcttaggttgaaatatttgccttgaaaattcaaaagaaagatgtttctatgtttgaatatttgaccgacttttactggacat |
29719670 |
T |
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| Q |
413 |
tgttctgatggggcaatcattgcaat |
438 |
Q |
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|||||||||||||||||||||||||| |
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| T |
29719671 |
tgttctgatggggcaatcattgcaat |
29719696 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 106; E-Value: 7e-53
Query Start/End: Original strand, 56 - 177
Target Start/End: Original strand, 29659361 - 29659482
Alignment:
| Q |
56 |
catttactcagctgtttctaatttggctgttgcaaacttgcaatgatgaattaatattgattcaatgatcttgatttttccaatgttgtttgatgttagg |
155 |
Q |
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|||||||||| ||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29659361 |
catttactcatctgcttctaatttggttgttgcaaacttgcaatgatgaattaatattgattcaatgatcttgatttttccaatgttgtttgatgttagg |
29659460 |
T |
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| Q |
156 |
tagtttgtgtgtgccagcttag |
177 |
Q |
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|||||||||||||| ||||||| |
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| T |
29659461 |
tagtttgtgtgtgctagcttag |
29659482 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 256 - 383
Target Start/End: Original strand, 29659551 - 29659678
Alignment:
| Q |
256 |
gcctgtaacactcttttgtgctgcaattaaattgtagaaattactaagtgtatataacaaaaaatattatattttgcttaggttgaaatatttgccttga |
355 |
Q |
| |
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|||| |||||||||||||||| |||||||||| || |||||||||||| |||||| |||||||||||||||||||||||||||||||||||| ||||| |
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| T |
29659551 |
gcctataacactcttttgtgcagcaattaaatcatataaattactaagtaaatataataaaaaatattatattttgcttaggttgaaatatttgacttga |
29659650 |
T |
|
| Q |
356 |
aaattcaaaagaaagatgtttctatgtt |
383 |
Q |
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|||||||| | ||||||||||| ||||| |
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|
| T |
29659651 |
aaattcaagacaaagatgtttccatgtt |
29659678 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 256 - 365
Target Start/End: Complemental strand, 33160344 - 33160234
Alignment:
| Q |
256 |
gcctgtaacactcttttgtgctgcaattaaattg-tagaaattactaagtgtatataacaaaaaatattatattttgcttaggttgaa-atatttgcctt |
353 |
Q |
| |
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|||| |||||||||||||||| | ||| ||||| ||||| |||| ||||| |||||||||||| || |||||||||||||||||||| ||||||||||| |
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| T |
33160344 |
gcctttaacactcttttgtgcagaaatgaaatttatagaagttaccaagtgaatataacaaaaa-taatatattttgcttaggttgaacatatttgcctt |
33160246 |
T |
|
| Q |
354 |
gaaaattcaaaa |
365 |
Q |
| |
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|| ||||||||| |
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| T |
33160245 |
gagaattcaaaa |
33160234 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 125 - 204
Target Start/End: Complemental strand, 8162378 - 8162295
Alignment:
| Q |
125 |
cttgatttttccaatgttgtttgatgttaggtagtttgtgtgtgccagctta----gcttaaaatatttccctgaattggttgt |
204 |
Q |
| |
|
|||||||||| | ||||||||||||||||||||||||||| ||| ||| | |||||||||||||||||||||||||||| |
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| T |
8162378 |
cttgattttttcgatgttgtttgatgttaggtagtttgtgagtgattgctgaatctgcttaaaatatttccctgaattggttgt |
8162295 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 130 - 175
Target Start/End: Original strand, 19469113 - 19469158
Alignment:
| Q |
130 |
tttttccaatgttgtttgatgttaggtagtttgtgtgtgccagctt |
175 |
Q |
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||||||||||||| |||||||||||||||||||||||||| ||||| |
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| T |
19469113 |
tttttccaatgttatttgatgttaggtagtttgtgtgtgctagctt |
19469158 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #7
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 77 - 116
Target Start/End: Complemental strand, 8162559 - 8162520
Alignment:
| Q |
77 |
tttggctgttgcaaacttgcaatgatgaattaatattgat |
116 |
Q |
| |
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|||||||||| ||||||||||||||||||||||| ||||| |
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| T |
8162559 |
tttggctgttacaaacttgcaatgatgaattaatgttgat |
8162520 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #8
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 406 - 438
Target Start/End: Original strand, 19469303 - 19469335
Alignment:
| Q |
406 |
tggacattgttctgatggggcaatcattgcaat |
438 |
Q |
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|||||||||||||||||||| |||||||||||| |
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| T |
19469303 |
tggacattgttctgatggggaaatcattgcaat |
19469335 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #9
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 23 - 55
Target Start/End: Original strand, 29659258 - 29659290
Alignment:
| Q |
23 |
aactgctgtgctcaagtttgattgaactttgta |
55 |
Q |
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||||||| ||||||||||||||||||||||||| |
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| T |
29659258 |
aactgctatgctcaagtttgattgaactttgta |
29659290 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 34; Significance: 0.0000000007; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 71 - 108
Target Start/End: Original strand, 55070070 - 55070107
Alignment:
| Q |
71 |
ttctaatttggctgttgcaaacttgcaatgatgaatta |
108 |
Q |
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||||||||| |||||||||||||||||||||||||||| |
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| T |
55070070 |
ttctaatttagctgttgcaaacttgcaatgatgaatta |
55070107 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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